data_7VPU
#
_model_server_result.job_id            O9gQ6Q6Qd7Lilxl4rGYvuQ 
_model_server_result.datetime_utc      '2024-11-17 02:32:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vpu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    7VPU 
#
_exptl.entry_id    7VPU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              396.648 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ERGOSTEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.325 
_cell.angle_gamma         90 
_cell.entry_id            7VPU 
_cell.length_a            64.379 
_cell.length_b            147.127 
_cell.length_c            90.948 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VPU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 199 A CYS 655 1_555 A SG CYS 267 A CYS 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
disulf ? disulf2 B SG CYS 199 B CYS 655 1_555 B SG CYS 267 B CYS 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
#
_chem_comp.formula           'C28 H44 O' 
_chem_comp.formula_weight    396.648 
_chem_comp.id                ERG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ERGOSTEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ERG sing 83 n n 
C1 C10 ERG sing 84 n n 
C1 H11 ERG sing 85 n n 
C1 H12 ERG sing 86 n n 
C2 C3 ERG sing 87 n n 
C2 H21 ERG sing 88 n n 
C2 H22A ERG sing 89 n n 
C3 C4 ERG sing 90 n n 
C3 O1 ERG sing 91 n n 
C3 H3 ERG sing 92 n n 
C4 C5 ERG sing 93 n n 
C4 H41 ERG sing 94 n n 
C4 H42 ERG sing 95 n n 
C5 C6 ERG doub 96 n n 
C5 C10 ERG sing 97 n n 
C6 C7 ERG sing 98 n n 
C6 H6 ERG sing 99 n n 
C7 C8 ERG doub 100 n n 
C7 H7 ERG sing 101 n n 
C8 C9 ERG sing 102 n n 
C8 C14 ERG sing 103 n n 
C9 C10 ERG sing 104 n n 
C9 C11 ERG sing 105 n n 
C9 H9 ERG sing 106 n n 
C10 C19 ERG sing 107 n n 
C11 C12 ERG sing 108 n n 
C11 H111 ERG sing 109 n n 
C11 H112 ERG sing 110 n n 
C12 C13 ERG sing 111 n n 
C12 H121 ERG sing 112 n n 
C12 H122 ERG sing 113 n n 
C13 C14 ERG sing 114 n n 
C13 C17 ERG sing 115 n n 
C13 C18 ERG sing 116 n n 
C14 C15 ERG sing 117 n n 
C14 H14 ERG sing 118 n n 
C15 C16 ERG sing 119 n n 
C15 H151 ERG sing 120 n n 
C15 H152 ERG sing 121 n n 
C16 C17 ERG sing 122 n n 
C16 H161 ERG sing 123 n n 
C16 H162 ERG sing 124 n n 
C17 C20 ERG sing 125 n n 
C17 H17 ERG sing 126 n n 
C18 H181 ERG sing 127 n n 
C18 H182 ERG sing 128 n n 
C18 H183 ERG sing 129 n n 
C19 H191 ERG sing 130 n n 
C19 H192 ERG sing 131 n n 
C19 H193 ERG sing 132 n n 
C20 C21 ERG sing 133 n n 
C20 C22 ERG sing 134 n n 
C20 H20 ERG sing 135 n n 
C21 H211 ERG sing 136 n n 
C21 H212 ERG sing 137 n n 
C21 H213 ERG sing 138 n n 
C22 C23 ERG doub 139 e n 
C22 H22 ERG sing 140 n n 
C23 C24 ERG sing 141 n n 
C23 H23 ERG sing 142 n n 
C24 C25 ERG sing 143 n n 
C24 C28 ERG sing 144 n n 
C24 H24 ERG sing 145 n n 
C25 C26 ERG sing 146 n n 
C25 C27 ERG sing 147 n n 
C25 H25 ERG sing 148 n n 
C26 H261 ERG sing 149 n n 
C26 H262 ERG sing 150 n n 
C26 H263 ERG sing 151 n n 
C27 H271 ERG sing 152 n n 
C27 H272 ERG sing 153 n n 
C27 H273 ERG sing 154 n n 
C28 H281 ERG sing 155 n n 
C28 H282 ERG sing 156 n n 
C28 H283 ERG sing 157 n n 
O1 HO1 ERG sing 158 n n 
#
_atom_sites.entry_id                     7VPU 
_atom_sites.fract_transf_matrix[1][1]    0.015533 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005145 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011583 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ERG A 1 801 801 ERG ERG . 
F 2 ERG B 1 801 801 ERG ERG . 
G 2 ERG C 1 801 801 ERG ERG . 
H 2 ERG D 1 801 801 ERG ERG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ERG . . . F 2 3.907 -51.087 -81.082 1 53.11 ? C1 ERG 801 B 1 
HETATM 2 C C2 ERG . . . F 2 4.732 -51.706 -82.208 1 53.88 ? C2 ERG 801 B 1 
HETATM 3 C C3 ERG . . . F 2 4.62 -50.795 -83.401 1 69.37 ? C3 ERG 801 B 1 
HETATM 4 C C4 ERG . . . F 2 5.151 -49.402 -83.06 1 46.71 ? C4 ERG 801 B 1 
HETATM 5 C C5 ERG . . . F 2 4.55 -48.861 -81.874 1 66.38 ? C5 ERG 801 B 1 
HETATM 6 C C6 ERG . . . F 2 4.372 -47.487 -81.78 1 61.32 ? C6 ERG 801 B 1 
HETATM 7 C C7 ERG . . . F 2 3.856 -46.862 -80.633 1 56.81 ? C7 ERG 801 B 1 
HETATM 8 C C8 ERG . . . F 2 3.501 -47.615 -79.51 1 54.45 ? C8 ERG 801 B 1 
HETATM 9 C C9 ERG . . . F 2 3.46 -49.034 -79.64 1 53.27 ? C9 ERG 801 B 1 
HETATM 10 C C10 ERG . . . F 2 4.373 -49.67 -80.722 1 55.85 ? C10 ERG 801 B 1 
HETATM 11 C C11 ERG . . . F 2 3.536 -49.818 -78.262 1 51.6 ? C11 ERG 801 B 1 
HETATM 12 C C12 ERG . . . F 2 2.759 -49.129 -77.135 1 60.13 ? C12 ERG 801 B 1 
HETATM 13 C C13 ERG . . . F 2 3.248 -47.671 -77.034 1 50.93 ? C13 ERG 801 B 1 
HETATM 14 C C14 ERG . . . F 2 2.836 -47.015 -78.373 1 55.72 ? C14 ERG 801 B 1 
HETATM 15 C C15 ERG . . . F 2 3.099 -45.549 -78.093 1 49.12 ? C15 ERG 801 B 1 
HETATM 16 C C16 ERG . . . F 2 2.679 -45.363 -76.607 1 64.12 ? C16 ERG 801 B 1 
HETATM 17 C C17 ERG . . . F 2 2.418 -46.802 -76.085 1 58.05 ? C17 ERG 801 B 1 
HETATM 18 C C18 ERG . . . F 2 4.758 -47.563 -76.722 1 51.75 ? C18 ERG 801 B 1 
HETATM 19 C C19 ERG . . . F 2 5.805 -49.735 -80.121 1 51.36 ? C19 ERG 801 B 1 
HETATM 20 C C20 ERG . . . F 2 2.729 -46.857 -74.574 1 52.51 ? C20 ERG 801 B 1 
HETATM 21 C C21 ERG . . . F 2 2.591 -48.243 -73.953 1 60.9 ? C21 ERG 801 B 1 
HETATM 22 C C22 ERG . . . F 2 1.734 -45.916 -73.907 1 56.5 ? C22 ERG 801 B 1 
HETATM 23 C C23 ERG . . . F 2 2.205 -44.661 -73.244 1 53.38 ? C23 ERG 801 B 1 
HETATM 24 C C24 ERG . . . F 2 1.186 -43.712 -72.614 1 60.79 ? C24 ERG 801 B 1 
HETATM 25 C C25 ERG . . . F 2 1.343 -43.776 -71.088 1 67.26 ? C25 ERG 801 B 1 
HETATM 26 C C26 ERG . . . F 2 2.728 -43.228 -70.721 1 63.32 ? C26 ERG 801 B 1 
HETATM 27 C C27 ERG . . . F 2 1.254 -45.214 -70.549 1 71.21 ? C27 ERG 801 B 1 
HETATM 28 C C28 ERG . . . F 2 1.487 -42.326 -73.147 1 64.1 ? C28 ERG 801 B 1 
HETATM 29 O O1 ERG . . . F 2 5.358 -51.355 -84.546 1 57.19 ? O1 ERG 801 B 1 
HETATM 30 H H11 ERG . . . F 2 2.864 -51.044 -81.397 1 63.82 ? H11 ERG 801 B 1 
HETATM 31 H H12 ERG . . . F 2 4.095 -51.696 -80.199 1 63.82 ? H12 ERG 801 B 1 
HETATM 32 H H21 ERG . . . F 2 5.773 -51.673 -81.884 1 64.74 ? H21 ERG 801 B 1 
HETATM 33 H H22A ERG . . . F 2 4.346 -52.695 -82.455 1 64.74 ? H22A ERG 801 B 1 
HETATM 34 H H3 ERG . . . F 2 3.568 -50.703 -83.669 1 83.34 ? H3 ERG 801 B 1 
HETATM 35 H H41 ERG . . . F 2 6.228 -49.466 -82.905 1 56.14 ? H41 ERG 801 B 1 
HETATM 36 H H42 ERG . . . F 2 4.852 -48.76 -83.887 1 56.14 ? H42 ERG 801 B 1 
HETATM 37 H H6 ERG . . . F 2 4.647 -46.865 -82.634 1 73.68 ? H6 ERG 801 B 1 
HETATM 38 H H7 ERG . . . F 2 3.729 -45.779 -80.62 1 68.26 ? H7 ERG 801 B 1 
HETATM 39 H H9 ERG . . . F 2 2.453 -49.251 -79.997 1 64.02 ? H9 ERG 801 B 1 
HETATM 40 H H111 ERG . . . F 2 4.581 -49.895 -77.965 1 62.01 ? H111 ERG 801 B 1 
HETATM 41 H H112 ERG . . . F 2 3.034 -50.768 -78.439 1 62.01 ? H112 ERG 801 B 1 
HETATM 42 H H121 ERG . . . F 2 1.691 -49.148 -77.358 1 72.25 ? H121 ERG 801 B 1 
HETATM 43 H H122 ERG . . . F 2 3.059 -49.621 -76.208 1 72.25 ? H122 ERG 801 B 1 
HETATM 44 H H14 ERG . . . F 2 1.76 -47.146 -78.485 1 66.95 ? H14 ERG 801 B 1 
HETATM 45 H H151 ERG . . . F 2 2.5 -44.915 -78.748 1 59.04 ? H151 ERG 801 B 1 
HETATM 46 H H152 ERG . . . F 2 4.18 -45.403 -78.132 1 59.04 ? H152 ERG 801 B 1 
HETATM 47 H H161 ERG . . . F 2 3.477 -44.888 -76.037 1 77.03 ? H161 ERG 801 B 1 
HETATM 48 H H162 ERG . . . F 2 1.716 -44.852 -76.617 1 77.03 ? H162 ERG 801 B 1 
HETATM 49 H H17 ERG . . . F 2 1.362 -47.035 -76.232 1 69.75 ? H17 ERG 801 B 1 
HETATM 50 H H181 ERG . . . F 2 5.319 -48.191 -77.414 1 62.19 ? H181 ERG 801 B 1 
HETATM 51 H H182 ERG . . . F 2 4.943 -47.894 -75.7 1 62.19 ? H182 ERG 801 B 1 
HETATM 52 H H183 ERG . . . F 2 4.981 -46.504 -76.858 1 62.19 ? H183 ERG 801 B 1 
HETATM 53 H H191 ERG . . . F 2 6.138 -48.728 -79.867 1 61.72 ? H191 ERG 801 B 1 
HETATM 54 H H192 ERG . . . F 2 6.486 -50.166 -80.854 1 61.72 ? H192 ERG 801 B 1 
HETATM 55 H H193 ERG . . . F 2 5.695 -50.367 -79.241 1 61.72 ? H193 ERG 801 B 1 
HETATM 56 H H20 ERG . . . F 2 3.742 -46.488 -74.406 1 63.1 ? H20 ERG 801 B 1 
HETATM 57 H H211 ERG . . . F 2 1.578 -48.614 -74.117 1 73.17 ? H211 ERG 801 B 1 
HETATM 58 H H212 ERG . . . F 2 2.785 -48.182 -72.883 1 73.17 ? H212 ERG 801 B 1 
HETATM 59 H H213 ERG . . . F 2 3.336 -48.845 -74.47 1 73.17 ? H213 ERG 801 B 1 
HETATM 60 H H22 ERG . . . F 2 0.671 -46.156 -73.915 1 67.89 ? H22 ERG 801 B 1 
HETATM 61 H H23 ERG . . . F 2 3.268 -44.423 -73.21 1 64.14 ? H23 ERG 801 B 1 
HETATM 62 H H24 ERG . . . F 2 0.175 -44.012 -72.894 1 73.04 ? H24 ERG 801 B 1 
HETATM 63 H H25 ERG . . . F 2 0.574 -43.167 -70.616 1 80.81 ? H25 ERG 801 B 1 
HETATM 64 H H261 ERG . . . F 2 3.497 -43.84 -71.193 1 76.08 ? H261 ERG 801 B 1 
HETATM 65 H H262 ERG . . . F 2 2.852 -43.256 -69.639 1 76.08 ? H262 ERG 801 B 1 
HETATM 66 H H263 ERG . . . F 2 2.722 -42.209 -71.107 1 76.08 ? H263 ERG 801 B 1 
HETATM 67 H H271 ERG . . . F 2 2.024 -45.827 -71.019 1 85.54 ? H271 ERG 801 B 1 
HETATM 68 H H272 ERG . . . F 2 0.272 -45.627 -70.776 1 85.54 ? H272 ERG 801 B 1 
HETATM 69 H H273 ERG . . . F 2 1.415 -45.106 -69.476 1 85.54 ? H273 ERG 801 B 1 
HETATM 70 H H281 ERG . . . F 2 2.5 -42.038 -72.859 1 77.01 ? H281 ERG 801 B 1 
HETATM 71 H H282 ERG . . . F 2 0.775 -41.615 -72.732 1 77.01 ? H282 ERG 801 B 1 
HETATM 72 H H283 ERG . . . F 2 1.383 -42.425 -74.23 1 77.01 ? H283 ERG 801 B 1 
HETATM 73 H HO1 ERG . . . F 2 6.326 -51.444 -84.309 1 68.72 ? HO1 ERG 801 B 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           73 
#