data_7VQ5 # _model_server_result.job_id '_XFgAVfNDIkcWvjiCiLoAg' _model_server_result.datetime_utc '2025-07-06 14:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7VQ5 # _exptl.entry_id 7VQ5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VQ5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 192 n n C1 O1B LMR sing 193 n n C1 C2 LMR sing 194 n n C2 O2 LMR sing 195 n n C2 C3 LMR sing 196 n n C3 C4 LMR sing 197 n n C4 O4A LMR sing 198 n n C4 O4B LMR doub 199 n n C2 H2 LMR sing 200 n n O2 HO2 LMR sing 201 n n C3 H3 LMR sing 202 n n C3 H3A LMR sing 203 n n O1B H4 LMR sing 204 n n O4A H5 LMR sing 205 n n # _atom_sites.entry_id 7VQ5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id LMR _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id LMR _pdbx_nonpoly_scheme.auth_mon_id MLT _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . C 2 89.682 92.213 102.315 1 53.81 ? C1 LMR 601 B 1 HETATM 2 O O1A LMR . . . C 2 88.786 92.462 101.488 1 53.81 ? O1A LMR 601 B 1 HETATM 3 O O1B LMR . . . C 2 89.708 92.828 103.401 1 53.81 ? O1B LMR 601 B 1 HETATM 4 C C2 LMR . . . C 2 90.72 91.187 101.99 1 53.81 ? C2 LMR 601 B 1 HETATM 5 O O2 LMR . . . C 2 91.221 91.375 100.688 1 53.81 ? O2 LMR 601 B 1 HETATM 6 C C3 LMR . . . C 2 91.856 91.258 102.994 1 53.81 ? C3 LMR 601 B 1 HETATM 7 C C4 LMR . . . C 2 92.888 90.24 102.597 1 53.81 ? C4 LMR 601 B 1 HETATM 8 O O4A LMR . . . C 2 93.284 89.382 103.411 1 53.81 ? O4A LMR 601 B 1 HETATM 9 O O4B LMR . . . C 2 93.348 90.25 101.439 1 53.81 ? O4B LMR 601 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #