data_7VQC # _model_server_result.job_id E99Dk6mCbV1uCE-FdrVqJg _model_server_result.datetime_utc '2024-11-25 07:54:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7VQC # _exptl.entry_id 7VQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.97 _cell.angle_gamma 90 _cell.entry_id 7VQC _cell.length_a 111.025 _cell.length_b 82.129 _cell.length_c 59.809 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 260 n n P1 O2 POP sing 261 n n P1 O3 POP sing 262 n n P1 O POP sing 263 n n O2 HO2 POP sing 264 n n O P2 POP sing 265 n n P2 O4 POP doub 266 n n P2 O5 POP sing 267 n n P2 O6 POP sing 268 n n O5 HO5 POP sing 269 n n # _atom_sites.entry_id 7VQC _atom_sites.fract_transf_matrix[1][1] 0.009007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002075 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 301 SO4 SO4 . D 2 SO4 A 1 302 302 SO4 SO4 . E 3 POP B 1 301 301 POP POP . F 4 HOH A 1 401 401 HOH HOH . F 4 HOH A 2 402 402 HOH HOH . F 4 HOH A 3 403 403 HOH HOH . F 4 HOH A 4 404 404 HOH HOH . F 4 HOH A 5 405 405 HOH HOH . F 4 HOH A 6 406 406 HOH HOH . F 4 HOH A 7 407 407 HOH HOH . F 4 HOH A 8 408 408 HOH HOH . F 4 HOH A 9 409 409 HOH HOH . F 4 HOH A 10 410 410 HOH HOH . F 4 HOH A 11 411 411 HOH HOH . F 4 HOH A 12 412 412 HOH HOH . F 4 HOH A 13 413 413 HOH HOH . F 4 HOH A 14 414 414 HOH HOH . F 4 HOH A 15 415 415 HOH HOH . F 4 HOH A 16 416 416 HOH HOH . F 4 HOH A 17 417 417 HOH HOH . F 4 HOH A 18 418 418 HOH HOH . F 4 HOH A 19 419 419 HOH HOH . F 4 HOH A 20 420 420 HOH HOH . F 4 HOH A 21 421 421 HOH HOH . F 4 HOH A 22 422 422 HOH HOH . F 4 HOH A 23 423 423 HOH HOH . F 4 HOH A 24 424 424 HOH HOH . F 4 HOH A 25 425 425 HOH HOH . F 4 HOH A 26 426 426 HOH HOH . F 4 HOH A 27 427 427 HOH HOH . F 4 HOH A 28 428 428 HOH HOH . F 4 HOH A 29 429 429 HOH HOH . F 4 HOH A 30 430 430 HOH HOH . F 4 HOH A 31 431 431 HOH HOH . F 4 HOH A 32 432 432 HOH HOH . F 4 HOH A 33 433 433 HOH HOH . F 4 HOH A 34 434 434 HOH HOH . F 4 HOH A 35 435 435 HOH HOH . F 4 HOH A 36 436 436 HOH HOH . F 4 HOH A 37 437 437 HOH HOH . F 4 HOH A 38 438 438 HOH HOH . F 4 HOH A 39 439 439 HOH HOH . F 4 HOH A 40 440 440 HOH HOH . F 4 HOH A 41 441 441 HOH HOH . F 4 HOH A 42 442 442 HOH HOH . F 4 HOH A 43 443 443 HOH HOH . F 4 HOH A 44 444 444 HOH HOH . F 4 HOH A 45 445 445 HOH HOH . F 4 HOH A 46 446 446 HOH HOH . F 4 HOH A 47 447 447 HOH HOH . F 4 HOH A 48 448 448 HOH HOH . F 4 HOH A 49 449 449 HOH HOH . F 4 HOH A 50 450 450 HOH HOH . F 4 HOH A 51 451 451 HOH HOH . F 4 HOH A 52 452 452 HOH HOH . F 4 HOH A 53 453 453 HOH HOH . F 4 HOH A 54 454 454 HOH HOH . F 4 HOH A 55 455 455 HOH HOH . F 4 HOH A 56 456 456 HOH HOH . F 4 HOH A 57 457 457 HOH HOH . F 4 HOH A 58 458 458 HOH HOH . F 4 HOH A 59 459 459 HOH HOH . F 4 HOH A 60 460 460 HOH HOH . F 4 HOH A 61 461 461 HOH HOH . F 4 HOH A 62 462 462 HOH HOH . F 4 HOH A 63 463 463 HOH HOH . F 4 HOH A 64 464 464 HOH HOH . F 4 HOH A 65 465 465 HOH HOH . F 4 HOH A 66 466 466 HOH HOH . F 4 HOH A 67 467 467 HOH HOH . F 4 HOH A 68 468 468 HOH HOH . F 4 HOH A 69 469 469 HOH HOH . F 4 HOH A 70 470 470 HOH HOH . F 4 HOH A 71 471 471 HOH HOH . F 4 HOH A 72 472 472 HOH HOH . F 4 HOH A 73 473 473 HOH HOH . F 4 HOH A 74 474 474 HOH HOH . F 4 HOH A 75 475 475 HOH HOH . F 4 HOH A 76 476 476 HOH HOH . F 4 HOH A 77 477 477 HOH HOH . F 4 HOH A 78 478 478 HOH HOH . F 4 HOH A 79 479 479 HOH HOH . F 4 HOH A 80 480 480 HOH HOH . F 4 HOH A 81 481 481 HOH HOH . F 4 HOH A 82 482 482 HOH HOH . F 4 HOH A 83 483 483 HOH HOH . F 4 HOH A 84 484 484 HOH HOH . F 4 HOH A 85 485 485 HOH HOH . F 4 HOH A 86 486 486 HOH HOH . F 4 HOH A 87 487 487 HOH HOH . F 4 HOH A 88 488 488 HOH HOH . F 4 HOH A 89 489 489 HOH HOH . F 4 HOH A 90 490 490 HOH HOH . F 4 HOH A 91 491 491 HOH HOH . F 4 HOH A 92 492 492 HOH HOH . F 4 HOH A 93 493 493 HOH HOH . F 4 HOH A 94 494 494 HOH HOH . F 4 HOH A 95 495 495 HOH HOH . F 4 HOH A 96 496 496 HOH HOH . F 4 HOH A 97 497 497 HOH HOH . F 4 HOH A 98 498 498 HOH HOH . F 4 HOH A 99 499 499 HOH HOH . F 4 HOH A 100 500 500 HOH HOH . F 4 HOH A 101 501 501 HOH HOH . F 4 HOH A 102 502 502 HOH HOH . F 4 HOH A 103 503 503 HOH HOH . F 4 HOH A 104 504 504 HOH HOH . F 4 HOH A 105 505 505 HOH HOH . F 4 HOH A 106 506 506 HOH HOH . F 4 HOH A 107 507 507 HOH HOH . F 4 HOH A 108 508 508 HOH HOH . F 4 HOH A 109 509 509 HOH HOH . F 4 HOH A 110 510 510 HOH HOH . F 4 HOH A 111 511 511 HOH HOH . F 4 HOH A 112 512 512 HOH HOH . F 4 HOH A 113 513 513 HOH HOH . F 4 HOH A 114 514 514 HOH HOH . F 4 HOH A 115 515 515 HOH HOH . F 4 HOH A 116 516 516 HOH HOH . F 4 HOH A 117 517 517 HOH HOH . F 4 HOH A 118 518 518 HOH HOH . F 4 HOH A 119 519 519 HOH HOH . F 4 HOH A 120 520 520 HOH HOH . F 4 HOH A 121 521 521 HOH HOH . F 4 HOH A 122 522 522 HOH HOH . F 4 HOH A 123 523 523 HOH HOH . F 4 HOH A 124 524 524 HOH HOH . F 4 HOH A 125 525 525 HOH HOH . F 4 HOH A 126 526 526 HOH HOH . F 4 HOH A 127 527 527 HOH HOH . F 4 HOH A 128 528 528 HOH HOH . F 4 HOH A 129 529 529 HOH HOH . F 4 HOH A 130 530 530 HOH HOH . F 4 HOH A 131 531 531 HOH HOH . F 4 HOH A 132 532 532 HOH HOH . F 4 HOH A 133 533 533 HOH HOH . F 4 HOH A 134 534 535 HOH HOH . F 4 HOH A 135 535 537 HOH HOH . F 4 HOH A 136 536 538 HOH HOH . F 4 HOH A 137 537 536 HOH HOH . G 4 HOH B 1 401 401 HOH HOH . G 4 HOH B 2 402 402 HOH HOH . G 4 HOH B 3 403 403 HOH HOH . G 4 HOH B 4 404 404 HOH HOH . G 4 HOH B 5 405 405 HOH HOH . G 4 HOH B 6 406 406 HOH HOH . G 4 HOH B 7 407 407 HOH HOH . G 4 HOH B 8 408 408 HOH HOH . G 4 HOH B 9 409 409 HOH HOH . G 4 HOH B 10 410 410 HOH HOH . G 4 HOH B 11 411 411 HOH HOH . G 4 HOH B 12 412 412 HOH HOH . G 4 HOH B 13 413 413 HOH HOH . G 4 HOH B 14 414 414 HOH HOH . G 4 HOH B 15 415 415 HOH HOH . G 4 HOH B 16 416 416 HOH HOH . G 4 HOH B 17 417 417 HOH HOH . G 4 HOH B 18 418 418 HOH HOH . G 4 HOH B 19 419 419 HOH HOH . G 4 HOH B 20 420 420 HOH HOH . G 4 HOH B 21 421 421 HOH HOH . G 4 HOH B 22 422 422 HOH HOH . G 4 HOH B 23 423 423 HOH HOH . G 4 HOH B 24 424 424 HOH HOH . G 4 HOH B 25 425 425 HOH HOH . G 4 HOH B 26 426 426 HOH HOH . G 4 HOH B 27 427 427 HOH HOH . G 4 HOH B 28 428 428 HOH HOH . G 4 HOH B 29 429 429 HOH HOH . G 4 HOH B 30 430 430 HOH HOH . G 4 HOH B 31 431 431 HOH HOH . G 4 HOH B 32 432 432 HOH HOH . G 4 HOH B 33 433 433 HOH HOH . G 4 HOH B 34 434 434 HOH HOH . G 4 HOH B 35 435 435 HOH HOH . G 4 HOH B 36 436 436 HOH HOH . G 4 HOH B 37 437 437 HOH HOH . G 4 HOH B 38 438 438 HOH HOH . G 4 HOH B 39 439 439 HOH HOH . G 4 HOH B 40 440 440 HOH HOH . G 4 HOH B 41 441 441 HOH HOH . G 4 HOH B 42 442 442 HOH HOH . G 4 HOH B 43 443 443 HOH HOH . G 4 HOH B 44 444 444 HOH HOH . G 4 HOH B 45 445 445 HOH HOH . G 4 HOH B 46 446 446 HOH HOH . G 4 HOH B 47 447 447 HOH HOH . G 4 HOH B 48 448 448 HOH HOH . G 4 HOH B 49 449 449 HOH HOH . G 4 HOH B 50 450 450 HOH HOH . G 4 HOH B 51 451 451 HOH HOH . G 4 HOH B 52 452 452 HOH HOH . G 4 HOH B 53 453 453 HOH HOH . G 4 HOH B 54 454 454 HOH HOH . G 4 HOH B 55 455 455 HOH HOH . G 4 HOH B 56 456 456 HOH HOH . G 4 HOH B 57 457 457 HOH HOH . G 4 HOH B 58 458 458 HOH HOH . G 4 HOH B 59 459 459 HOH HOH . G 4 HOH B 60 460 460 HOH HOH . G 4 HOH B 61 461 461 HOH HOH . G 4 HOH B 62 462 462 HOH HOH . G 4 HOH B 63 463 463 HOH HOH . G 4 HOH B 64 464 464 HOH HOH . G 4 HOH B 65 465 465 HOH HOH . G 4 HOH B 66 466 466 HOH HOH . G 4 HOH B 67 467 467 HOH HOH . G 4 HOH B 68 468 468 HOH HOH . G 4 HOH B 69 469 469 HOH HOH . G 4 HOH B 70 470 470 HOH HOH . G 4 HOH B 71 471 471 HOH HOH . G 4 HOH B 72 472 472 HOH HOH . G 4 HOH B 73 473 473 HOH HOH . G 4 HOH B 74 474 474 HOH HOH . G 4 HOH B 75 475 475 HOH HOH . G 4 HOH B 76 476 476 HOH HOH . G 4 HOH B 77 477 478 HOH HOH . G 4 HOH B 78 478 479 HOH HOH . G 4 HOH B 79 479 480 HOH HOH . G 4 HOH B 80 480 481 HOH HOH . G 4 HOH B 81 481 482 HOH HOH . G 4 HOH B 82 482 483 HOH HOH . G 4 HOH B 83 483 484 HOH HOH . G 4 HOH B 84 484 485 HOH HOH . G 4 HOH B 85 485 486 HOH HOH . G 4 HOH B 86 486 487 HOH HOH . G 4 HOH B 87 487 488 HOH HOH . G 4 HOH B 88 488 489 HOH HOH . G 4 HOH B 89 489 490 HOH HOH . G 4 HOH B 90 490 491 HOH HOH . G 4 HOH B 91 491 492 HOH HOH . G 4 HOH B 92 492 493 HOH HOH . G 4 HOH B 93 493 477 HOH HOH . G 4 HOH B 94 494 494 HOH HOH . G 4 HOH B 95 495 495 HOH HOH . G 4 HOH B 96 496 496 HOH HOH . G 4 HOH B 97 497 497 HOH HOH . G 4 HOH B 98 498 498 HOH HOH . G 4 HOH B 99 499 499 HOH HOH . G 4 HOH B 100 500 500 HOH HOH . G 4 HOH B 101 501 501 HOH HOH . G 4 HOH B 102 502 502 HOH HOH . G 4 HOH B 103 503 503 HOH HOH . G 4 HOH B 104 504 504 HOH HOH . G 4 HOH B 105 505 505 HOH HOH . G 4 HOH B 106 506 506 HOH HOH . G 4 HOH B 107 507 507 HOH HOH . G 4 HOH B 108 508 508 HOH HOH . G 4 HOH B 109 509 509 HOH HOH . G 4 HOH B 110 510 510 HOH HOH . G 4 HOH B 111 511 511 HOH HOH . G 4 HOH B 112 512 512 HOH HOH . G 4 HOH B 113 513 513 HOH HOH . G 4 HOH B 114 514 514 HOH HOH . G 4 HOH B 115 515 515 HOH HOH . G 4 HOH B 116 516 516 HOH HOH . G 4 HOH B 117 517 517 HOH HOH . G 4 HOH B 118 518 518 HOH HOH . G 4 HOH B 119 519 519 HOH HOH . G 4 HOH B 120 520 520 HOH HOH . G 4 HOH B 121 521 521 HOH HOH . G 4 HOH B 122 522 522 HOH HOH . G 4 HOH B 123 523 523 HOH HOH . G 4 HOH B 124 524 524 HOH HOH . G 4 HOH B 125 525 525 HOH HOH . G 4 HOH B 126 526 526 HOH HOH . G 4 HOH B 127 527 527 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . E 3 34.224 -3.672 31.683 1 43.62 ? P1 POP 301 B 1 HETATM 2 O O1 POP . . . E 3 33.949 -3.218 30.272 1 44.12 ? O1 POP 301 B 1 HETATM 3 O O2 POP . . . E 3 33.357 -4.865 32.005 1 43.01 ? O2 POP 301 B 1 HETATM 4 O O3 POP . . . E 3 35.715 -3.876 31.923 1 44.93 ? O3 POP 301 B 1 HETATM 5 O O POP . . . E 3 33.735 -2.493 32.738 1 50.72 ? O POP 301 B 1 HETATM 6 P P2 POP . . . E 3 32.962 -1.068 32.374 1 64.88 ? P2 POP 301 B 1 HETATM 7 O O4 POP . . . E 3 32.562 -1.138 30.91 1 73.16 ? O4 POP 301 B 1 HETATM 8 O O5 POP . . . E 3 33.985 0.037 32.6 1 65.27 ? O5 POP 301 B 1 HETATM 9 O O6 POP . . . E 3 31.712 -0.955 33.24 1 61.17 ? O6 POP 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #