data_7VQG # _model_server_result.job_id GLC-sBOMBt1wn_yMLLVy2w _model_server_result.datetime_utc '2024-11-04 18:55:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7VQG # _exptl.entry_id 7VQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VQG _cell.length_a 39.093 _cell.length_b 40.561 _cell.length_c 84.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 15 1_555 A SG CYS 119 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 45 A CYS 46 1_555 A SG CYS 54 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc1 A NE2 HIS 63 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 95 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 7VQG _atom_sites.fract_transf_matrix[1][1] 0.02558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 DIO A 1 202 205 DIO DIO . D 3 DIO A 1 203 206 DIO DIO . E 4 MES A 1 204 208 MES MES . F 3 DIO A 1 205 209 DIO DIO . G 5 SO4 A 1 206 3 SO4 SO4 . H 5 SO4 A 1 207 4 SO4 SO4 . I 6 HOH A 1 301 147 HOH HOH . I 6 HOH A 2 302 183 HOH HOH . I 6 HOH A 3 303 134 HOH HOH . I 6 HOH A 4 304 61 HOH HOH . I 6 HOH A 5 305 156 HOH HOH . I 6 HOH A 6 306 168 HOH HOH . I 6 HOH A 7 307 74 HOH HOH . I 6 HOH A 8 308 89 HOH HOH . I 6 HOH A 9 309 41 HOH HOH . I 6 HOH A 10 310 68 HOH HOH . I 6 HOH A 11 311 42 HOH HOH . I 6 HOH A 12 312 88 HOH HOH . I 6 HOH A 13 313 83 HOH HOH . I 6 HOH A 14 314 46 HOH HOH . I 6 HOH A 15 315 165 HOH HOH . I 6 HOH A 16 316 96 HOH HOH . I 6 HOH A 17 317 24 HOH HOH . I 6 HOH A 18 318 34 HOH HOH . I 6 HOH A 19 319 60 HOH HOH . I 6 HOH A 20 320 59 HOH HOH . I 6 HOH A 21 321 27 HOH HOH . I 6 HOH A 22 322 155 HOH HOH . I 6 HOH A 23 323 97 HOH HOH . I 6 HOH A 24 324 57 HOH HOH . I 6 HOH A 25 325 159 HOH HOH . I 6 HOH A 26 326 113 HOH HOH . I 6 HOH A 27 327 114 HOH HOH . I 6 HOH A 28 328 29 HOH HOH . I 6 HOH A 29 329 176 HOH HOH . I 6 HOH A 30 330 45 HOH HOH . I 6 HOH A 31 331 16 HOH HOH . I 6 HOH A 32 332 148 HOH HOH . I 6 HOH A 33 333 49 HOH HOH . I 6 HOH A 34 334 26 HOH HOH . I 6 HOH A 35 335 15 HOH HOH . I 6 HOH A 36 336 85 HOH HOH . I 6 HOH A 37 337 50 HOH HOH . I 6 HOH A 38 338 7 HOH HOH . I 6 HOH A 39 339 65 HOH HOH . I 6 HOH A 40 340 169 HOH HOH . I 6 HOH A 41 341 48 HOH HOH . I 6 HOH A 42 342 23 HOH HOH . I 6 HOH A 43 343 21 HOH HOH . I 6 HOH A 44 344 181 HOH HOH . I 6 HOH A 45 345 160 HOH HOH . I 6 HOH A 46 346 70 HOH HOH . I 6 HOH A 47 347 35 HOH HOH . I 6 HOH A 48 348 172 HOH HOH . I 6 HOH A 49 349 25 HOH HOH . I 6 HOH A 50 350 80 HOH HOH . I 6 HOH A 51 351 4 HOH HOH . I 6 HOH A 52 352 9 HOH HOH . I 6 HOH A 53 353 84 HOH HOH . I 6 HOH A 54 354 17 HOH HOH . I 6 HOH A 55 355 139 HOH HOH . I 6 HOH A 56 356 5 HOH HOH . I 6 HOH A 57 357 105 HOH HOH . I 6 HOH A 58 358 102 HOH HOH . I 6 HOH A 59 359 10 HOH HOH . I 6 HOH A 60 360 51 HOH HOH . I 6 HOH A 61 361 98 HOH HOH . I 6 HOH A 62 362 116 HOH HOH . I 6 HOH A 63 363 6 HOH HOH . I 6 HOH A 64 364 90 HOH HOH . I 6 HOH A 65 365 18 HOH HOH . I 6 HOH A 66 366 1 HOH HOH . I 6 HOH A 67 367 11 HOH HOH . I 6 HOH A 68 368 77 HOH HOH . I 6 HOH A 69 369 118 HOH HOH . I 6 HOH A 70 370 63 HOH HOH . I 6 HOH A 71 371 37 HOH HOH . I 6 HOH A 72 372 19 HOH HOH . I 6 HOH A 73 373 32 HOH HOH . I 6 HOH A 74 374 126 HOH HOH . I 6 HOH A 75 375 36 HOH HOH . I 6 HOH A 76 376 67 HOH HOH . I 6 HOH A 77 377 14 HOH HOH . I 6 HOH A 78 378 12 HOH HOH . I 6 HOH A 79 379 28 HOH HOH . I 6 HOH A 80 380 39 HOH HOH . I 6 HOH A 81 381 66 HOH HOH . I 6 HOH A 82 382 53 HOH HOH . I 6 HOH A 83 383 99 HOH HOH . I 6 HOH A 84 384 91 HOH HOH . I 6 HOH A 85 385 3 HOH HOH . I 6 HOH A 86 386 22 HOH HOH . I 6 HOH A 87 387 20 HOH HOH . I 6 HOH A 88 388 167 HOH HOH . I 6 HOH A 89 389 86 HOH HOH . I 6 HOH A 90 390 124 HOH HOH . I 6 HOH A 91 391 119 HOH HOH . I 6 HOH A 92 392 106 HOH HOH . I 6 HOH A 93 393 47 HOH HOH . I 6 HOH A 94 394 2 HOH HOH . I 6 HOH A 95 395 142 HOH HOH . I 6 HOH A 96 396 146 HOH HOH . I 6 HOH A 97 397 78 HOH HOH . I 6 HOH A 98 398 56 HOH HOH . I 6 HOH A 99 399 72 HOH HOH . I 6 HOH A 100 400 71 HOH HOH . I 6 HOH A 101 401 123 HOH HOH . I 6 HOH A 102 402 150 HOH HOH . I 6 HOH A 103 403 161 HOH HOH . I 6 HOH A 104 404 179 HOH HOH . I 6 HOH A 105 405 109 HOH HOH . I 6 HOH A 106 406 75 HOH HOH . I 6 HOH A 107 407 180 HOH HOH . I 6 HOH A 108 408 43 HOH HOH . I 6 HOH A 109 409 129 HOH HOH . I 6 HOH A 110 410 137 HOH HOH . I 6 HOH A 111 411 100 HOH HOH . I 6 HOH A 112 412 170 HOH HOH . I 6 HOH A 113 413 175 HOH HOH . I 6 HOH A 114 414 184 HOH HOH . I 6 HOH A 115 415 62 HOH HOH . I 6 HOH A 116 416 110 HOH HOH . I 6 HOH A 117 417 107 HOH HOH . I 6 HOH A 118 418 173 HOH HOH . I 6 HOH A 119 419 182 HOH HOH . I 6 HOH A 120 420 153 HOH HOH . I 6 HOH A 121 421 127 HOH HOH . I 6 HOH A 122 422 117 HOH HOH . I 6 HOH A 123 423 8 HOH HOH . I 6 HOH A 124 424 151 HOH HOH . I 6 HOH A 125 425 149 HOH HOH . I 6 HOH A 126 426 166 HOH HOH . I 6 HOH A 127 427 82 HOH HOH . I 6 HOH A 128 428 154 HOH HOH . I 6 HOH A 129 429 162 HOH HOH . I 6 HOH A 130 430 94 HOH HOH . I 6 HOH A 131 431 140 HOH HOH . I 6 HOH A 132 432 144 HOH HOH . I 6 HOH A 133 433 120 HOH HOH . I 6 HOH A 134 434 38 HOH HOH . I 6 HOH A 135 435 76 HOH HOH . I 6 HOH A 136 436 92 HOH HOH . I 6 HOH A 137 437 55 HOH HOH . I 6 HOH A 138 438 171 HOH HOH . I 6 HOH A 139 439 136 HOH HOH . I 6 HOH A 140 440 135 HOH HOH . I 6 HOH A 141 441 95 HOH HOH . I 6 HOH A 142 442 54 HOH HOH . I 6 HOH A 143 443 174 HOH HOH . I 6 HOH A 144 444 164 HOH HOH . I 6 HOH A 145 445 93 HOH HOH . I 6 HOH A 146 446 64 HOH HOH . I 6 HOH A 147 447 101 HOH HOH . I 6 HOH A 148 448 52 HOH HOH . I 6 HOH A 149 449 158 HOH HOH . I 6 HOH A 150 450 125 HOH HOH . I 6 HOH A 151 451 73 HOH HOH . I 6 HOH A 152 452 115 HOH HOH . I 6 HOH A 153 453 157 HOH HOH . I 6 HOH A 154 454 152 HOH HOH . I 6 HOH A 155 455 128 HOH HOH . I 6 HOH A 156 456 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . C 3 25.393 5.588 14.774 1 27.4 ? C1 DIO 202 A 1 HETATM 2 C C2 DIO . . . C 3 26.568 3.583 14.396 1 27.81 ? C2 DIO 202 A 1 HETATM 3 C C1' DIO . . . C 3 24.943 5.58 13.422 1 26.23 ? C1' DIO 202 A 1 HETATM 4 C C2' DIO . . . C 3 26.275 3.644 13.002 1 26.9 ? C2' DIO 202 A 1 HETATM 5 O O1 DIO . . . C 3 25.601 4.218 15.186 1 28.43 ? O1 DIO 202 A 1 HETATM 6 O O1' DIO . . . C 3 26.003 4.986 12.606 1 26.21 ? O1' DIO 202 A 1 HETATM 7 H H11 DIO . . . C 3 24.721 6 15.339 1 32.88 ? H11 DIO 202 A 1 HETATM 8 H H12 DIO . . . C 3 26.228 6.078 14.837 1 32.88 ? H12 DIO 202 A 1 HETATM 9 H H21 DIO . . . C 3 26.623 2.652 14.661 1 33.38 ? H21 DIO 202 A 1 HETATM 10 H H22 DIO . . . C 3 27.425 4.009 14.552 1 33.38 ? H22 DIO 202 A 1 HETATM 11 H "H1'1" DIO . . . C 3 24.774 6.489 13.129 1 31.48 ? "H1'1" DIO 202 A 1 HETATM 12 H "H1'2" DIO . . . C 3 24.135 5.049 13.348 1 31.48 ? "H1'2" DIO 202 A 1 HETATM 13 H "H2'1" DIO . . . C 3 25.499 3.093 12.815 1 32.29 ? "H2'1" DIO 202 A 1 HETATM 14 H "H2'2" DIO . . . C 3 27.037 3.312 12.502 1 32.29 ? "H2'2" DIO 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #