data_7VR6
#
_model_server_result.job_id            kvMV3KqnNLaEzY9kPbTKIw 
_model_server_result.datetime_utc      '2024-10-19 21:37:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7VR6 
#
_exptl.entry_id    7VR6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              691.959 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7VR6 
_cell.length_a            114.94 
_cell.length_b            114.94 
_cell.length_c            46.1 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C37 H74 N O8 P' 
_chem_comp.formula_weight    691.959 
_chem_comp.id                PEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 PEF sing 233 n n 
C2 C3 PEF sing 234 n n 
C2 O2 PEF sing 235 n n 
C2 H21 PEF sing 236 n n 
C1 O3P PEF sing 237 n n 
C1 H11 PEF sing 238 n n 
C1 H12 PEF sing 239 n n 
N C5 PEF sing 240 n n 
N HN1 PEF sing 241 n n 
N HN2 PEF sing 242 n n 
C3 O3 PEF sing 243 n n 
C3 H31 PEF sing 244 n n 
C3 H32 PEF sing 245 n n 
C4 C5 PEF sing 246 n n 
C4 O4P PEF sing 247 n n 
C4 H41 PEF sing 248 n n 
C4 H42 PEF sing 249 n n 
C5 H51 PEF sing 250 n n 
C5 H52 PEF sing 251 n n 
C10 C11 PEF sing 252 n n 
C10 O4 PEF doub 253 n n 
C10 O2 PEF sing 254 n n 
C11 C12 PEF sing 255 n n 
C11 H112 PEF sing 256 n n 
C11 H111 PEF sing 257 n n 
C12 C13 PEF sing 258 n n 
C12 H122 PEF sing 259 n n 
C12 H121 PEF sing 260 n n 
C13 C14 PEF sing 261 n n 
C13 H132 PEF sing 262 n n 
C13 H131 PEF sing 263 n n 
C14 C15 PEF sing 264 n n 
C14 H142 PEF sing 265 n n 
C14 H141 PEF sing 266 n n 
C15 C16 PEF sing 267 n n 
C15 H152 PEF sing 268 n n 
C15 H151 PEF sing 269 n n 
C16 C17 PEF sing 270 n n 
C16 H162 PEF sing 271 n n 
C16 H161 PEF sing 272 n n 
C17 C18 PEF sing 273 n n 
C17 H172 PEF sing 274 n n 
C17 H171 PEF sing 275 n n 
C18 C19 PEF sing 276 n n 
C18 H182 PEF sing 277 n n 
C18 H181 PEF sing 278 n n 
C19 C20 PEF sing 279 n n 
C19 H192 PEF sing 280 n n 
C19 H191 PEF sing 281 n n 
C20 C21 PEF sing 282 n n 
C20 H202 PEF sing 283 n n 
C20 H201 PEF sing 284 n n 
C21 C22 PEF sing 285 n n 
C21 H212 PEF sing 286 n n 
C21 H211 PEF sing 287 n n 
C22 C23 PEF sing 288 n n 
C22 H222 PEF sing 289 n n 
C22 H221 PEF sing 290 n n 
C23 C24 PEF sing 291 n n 
C23 H232 PEF sing 292 n n 
C23 H231 PEF sing 293 n n 
C24 C25 PEF sing 294 n n 
C24 H242 PEF sing 295 n n 
C24 H241 PEF sing 296 n n 
C25 H252 PEF sing 297 n n 
C25 H251 PEF sing 298 n n 
C25 H253 PEF sing 299 n n 
C30 C31 PEF sing 300 n n 
C30 O5 PEF doub 301 n n 
C30 O3 PEF sing 302 n n 
C31 C32 PEF sing 303 n n 
C31 H312 PEF sing 304 n n 
C31 H311 PEF sing 305 n n 
C32 C33 PEF sing 306 n n 
C32 H322 PEF sing 307 n n 
C32 H321 PEF sing 308 n n 
C33 C34 PEF sing 309 n n 
C33 H332 PEF sing 310 n n 
C33 H331 PEF sing 311 n n 
C34 C35 PEF sing 312 n n 
C34 H342 PEF sing 313 n n 
C34 H341 PEF sing 314 n n 
C35 C36 PEF sing 315 n n 
C35 H352 PEF sing 316 n n 
C35 H351 PEF sing 317 n n 
C36 C37 PEF sing 318 n n 
C36 H362 PEF sing 319 n n 
C36 H361 PEF sing 320 n n 
C37 C38 PEF sing 321 n n 
C37 H372 PEF sing 322 n n 
C37 H371 PEF sing 323 n n 
C38 C39 PEF sing 324 n n 
C38 H382 PEF sing 325 n n 
C38 H381 PEF sing 326 n n 
C39 C40 PEF sing 327 n n 
C39 H392 PEF sing 328 n n 
C39 H391 PEF sing 329 n n 
C40 C41 PEF sing 330 n n 
C40 H402 PEF sing 331 n n 
C40 H401 PEF sing 332 n n 
C41 C42 PEF sing 333 n n 
C41 H412 PEF sing 334 n n 
C41 H411 PEF sing 335 n n 
C42 C43 PEF sing 336 n n 
C42 H422 PEF sing 337 n n 
C42 H421 PEF sing 338 n n 
C43 C44 PEF sing 339 n n 
C43 H432 PEF sing 340 n n 
C43 H431 PEF sing 341 n n 
C44 C45 PEF sing 342 n n 
C44 H442 PEF sing 343 n n 
C44 H441 PEF sing 344 n n 
C45 H452 PEF sing 345 n n 
C45 H451 PEF sing 346 n n 
C45 H453 PEF sing 347 n n 
O1P P PEF doub 348 n n 
O2P P PEF sing 349 n n 
O2P HOP2 PEF sing 350 n n 
O3P P PEF sing 351 n n 
O4P P PEF sing 352 n n 
#
_atom_sites.entry_id                     7VR6 
_atom_sites.fract_transf_matrix[1][1]    0.0087 
_atom_sites.fract_transf_matrix[1][2]    0.005023 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010046 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021692 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PEF A 1 301 1 PEF PEF . 
C 3 EDO A 1 302 2 EDO EDO . 
D 4 HOH A 1 401 31 HOH HOH . 
D 4 HOH A 2 402 36 HOH HOH . 
D 4 HOH A 3 403 16 HOH HOH . 
D 4 HOH A 4 404 53 HOH HOH . 
D 4 HOH A 5 405 38 HOH HOH . 
D 4 HOH A 6 406 10 HOH HOH . 
D 4 HOH A 7 407 14 HOH HOH . 
D 4 HOH A 8 408 11 HOH HOH . 
D 4 HOH A 9 409 57 HOH HOH . 
D 4 HOH A 10 410 55 HOH HOH . 
D 4 HOH A 11 411 46 HOH HOH . 
D 4 HOH A 12 412 5 HOH HOH . 
D 4 HOH A 13 413 42 HOH HOH . 
D 4 HOH A 14 414 8 HOH HOH . 
D 4 HOH A 15 415 50 HOH HOH . 
D 4 HOH A 16 416 37 HOH HOH . 
D 4 HOH A 17 417 29 HOH HOH . 
D 4 HOH A 18 418 32 HOH HOH . 
D 4 HOH A 19 419 1 HOH HOH . 
D 4 HOH A 20 420 44 HOH HOH . 
D 4 HOH A 21 421 51 HOH HOH . 
D 4 HOH A 22 422 27 HOH HOH . 
D 4 HOH A 23 423 6 HOH HOH . 
D 4 HOH A 24 424 26 HOH HOH . 
D 4 HOH A 25 425 30 HOH HOH . 
D 4 HOH A 26 426 28 HOH HOH . 
D 4 HOH A 27 427 9 HOH HOH . 
D 4 HOH A 28 428 58 HOH HOH . 
D 4 HOH A 29 429 13 HOH HOH . 
D 4 HOH A 30 430 40 HOH HOH . 
D 4 HOH A 31 431 33 HOH HOH . 
D 4 HOH A 32 432 2 HOH HOH . 
D 4 HOH A 33 433 12 HOH HOH . 
D 4 HOH A 34 434 56 HOH HOH . 
D 4 HOH A 35 435 21 HOH HOH . 
D 4 HOH A 36 436 19 HOH HOH . 
D 4 HOH A 37 437 43 HOH HOH . 
D 4 HOH A 38 438 4 HOH HOH . 
D 4 HOH A 39 439 23 HOH HOH . 
D 4 HOH A 40 440 49 HOH HOH . 
D 4 HOH A 41 441 45 HOH HOH . 
D 4 HOH A 42 442 20 HOH HOH . 
D 4 HOH A 43 443 35 HOH HOH . 
D 4 HOH A 44 444 18 HOH HOH . 
D 4 HOH A 45 445 52 HOH HOH . 
D 4 HOH A 46 446 54 HOH HOH . 
D 4 HOH A 47 447 24 HOH HOH . 
D 4 HOH A 48 448 34 HOH HOH . 
D 4 HOH A 49 449 41 HOH HOH . 
D 4 HOH A 50 450 47 HOH HOH . 
D 4 HOH A 51 451 48 HOH HOH . 
D 4 HOH A 52 452 39 HOH HOH . 
D 4 HOH A 53 453 7 HOH HOH . 
D 4 HOH A 54 454 17 HOH HOH . 
D 4 HOH A 55 455 25 HOH HOH . 
D 4 HOH A 56 456 3 HOH HOH . 
D 4 HOH A 57 457 22 HOH HOH . 
D 4 HOH A 58 458 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PEF . . . B 2 9.766 25.857 0.891 1 68.84 ? C2 PEF 301 A 1 
HETATM 2 C C1 PEF . . . B 2 9.493 26.609 -0.392 1 76.03 ? C1 PEF 301 A 1 
HETATM 3 N N PEF . . . B 2 12.913 22.593 -2.706 1 69.65 ? N PEF 301 A 1 
HETATM 4 C C3 PEF . . . B 2 9.565 26.697 2.129 1 67.26 ? C3 PEF 301 A 1 
HETATM 5 C C4 PEF . . . B 2 12.194 24.915 -3.047 1 74.38 ? C4 PEF 301 A 1 
HETATM 6 C C5 PEF . . . B 2 12.614 23.871 -2.053 1 70.36 ? C5 PEF 301 A 1 
HETATM 7 C C10 PEF . . . B 2 9.388 23.488 0.981 1 62.32 ? C10 PEF 301 A 1 
HETATM 8 C C11 PEF . . . B 2 9.038 22.692 -0.242 1 58.44 ? C11 PEF 301 A 1 
HETATM 9 C C12 PEF . . . B 2 8.909 21.218 0.009 1 52.9 ? C12 PEF 301 A 1 
HETATM 10 C C13 PEF . . . B 2 7.523 20.672 -0.285 1 50.84 ? C13 PEF 301 A 1 
HETATM 11 C C14 PEF . . . B 2 7.524 19.382 -1.084 1 49.44 ? C14 PEF 301 A 1 
HETATM 12 C C15 PEF . . . B 2 6.163 18.849 -1.498 1 45.42 ? C15 PEF 301 A 1 
HETATM 13 C C16 PEF . . . B 2 5.038 19.115 -0.525 1 43.21 ? C16 PEF 301 A 1 
HETATM 14 C C17 PEF . . . B 2 4.827 18.029 0.494 1 40.78 ? C17 PEF 301 A 1 
HETATM 15 C C18 PEF . . . B 2 3.771 18.369 1.497 1 40.52 ? C18 PEF 301 A 1 
HETATM 16 C C19 PEF . . . B 2 3.84 17.595 2.774 1 40.19 ? C19 PEF 301 A 1 
HETATM 17 C C20 PEF . . . B 2 3.543 18.417 4.003 1 43.54 ? C20 PEF 301 A 1 
HETATM 18 C C21 PEF . . . B 2 4.726 18.524 4.944 1 49.27 ? C21 PEF 301 A 1 
HETATM 19 C C22 PEF . . . B 2 4.467 19.21 6.28 1 52.59 ? C22 PEF 301 A 1 
HETATM 20 C C23 PEF . . . B 2 3.204 18.771 7.039 1 53.26 ? C23 PEF 301 A 1 
HETATM 21 C C24 PEF . . . B 2 3.291 18.926 8.56 1 55.39 ? C24 PEF 301 A 1 
HETATM 22 C C25 PEF . . . B 2 2.113 18.416 9.366 1 50.23 ? C25 PEF 301 A 1 
HETATM 23 C C30 PEF . . . B 2 8.127 28.536 2.503 1 55.61 ? C30 PEF 301 A 1 
HETATM 24 C C31 PEF . . . B 2 8.644 29.627 3.38 1 54.05 ? C31 PEF 301 A 1 
HETATM 25 C C32 PEF . . . B 2 8.938 29.168 4.761 1 54.07 ? C32 PEF 301 A 1 
HETATM 26 C C33 PEF . . . B 2 7.758 29.259 5.697 1 50.35 ? C33 PEF 301 A 1 
HETATM 27 C C34 PEF . . . B 2 8.152 29.16 7.149 1 52.24 ? C34 PEF 301 A 1 
HETATM 28 C C35 PEF . . . B 2 8.965 30.331 7.65 1 53.1 ? C35 PEF 301 A 1 
HETATM 29 C C36 PEF . . . B 2 10.31 29.973 8.225 1 53.3 ? C36 PEF 301 A 1 
HETATM 30 C C37 PEF . . . B 2 10.437 30.203 9.713 1 52.45 ? C37 PEF 301 A 1 
HETATM 31 C C38 PEF . . . B 2 10.234 28.974 10.548 1 50.34 ? C38 PEF 301 A 1 
HETATM 32 C C39 PEF . . . B 2 8.8 28.724 10.929 1 52.05 ? C39 PEF 301 A 1 
HETATM 33 C C40 PEF . . . B 2 8.461 27.272 11.176 1 50.74 ? C40 PEF 301 A 1 
HETATM 34 C C41 PEF . . . B 2 7.33 26.727 10.311 1 52.13 ? C41 PEF 301 A 1 
HETATM 35 C C42 PEF . . . B 2 7.009 25.256 10.531 1 50.85 ? C42 PEF 301 A 1 
HETATM 36 C C43 PEF . . . B 2 5.546 24.875 10.364 1 49.24 ? C43 PEF 301 A 1 
HETATM 37 C C44 PEF . . . B 2 5.05 23.84 11.352 1 45.57 ? C44 PEF 301 A 1 
HETATM 38 C C45 PEF . . . B 2 3.686 23.306 11.025 1 43.97 ? C45 PEF 301 A 1 
HETATM 39 O O4 PEF . . . B 2 10.055 23.076 1.884 1 63.43 ? O4 PEF 301 A 1 
HETATM 40 O O5 PEF . . . B 2 6.987 28.187 2.495 1 55.63 ? O5 PEF 301 A 1 
HETATM 41 O O2 PEF . . . B 2 8.864 24.724 0.978 1 68.91 ? O2 PEF 301 A 1 
HETATM 42 O O3 PEF . . . B 2 9.073 27.998 1.735 1 63 ? O3 PEF 301 A 1 
HETATM 43 O O1P PEF . . . B 2 11.762 28.174 -2.814 1 93.36 ? O1P PEF 301 A 1 
HETATM 44 O O2P PEF . . . B 2 13.027 26.815 -0.998 1 90.57 ? O2P PEF 301 A 1 
HETATM 45 O O3P PEF . . . B 2 10.613 27.515 -0.648 1 86.45 ? O3P PEF 301 A 1 
HETATM 46 O O4P PEF . . . B 2 11.224 25.786 -2.433 1 82.02 ? O4P PEF 301 A 1 
HETATM 47 P P PEF . . . B 2 11.749 27.133 -1.728 1 96.04 ? P PEF 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           47 
#