data_7VR8
#
_model_server_result.job_id            Zh-tMyM4i9cMvuf8J2BzaA 
_model_server_result.datetime_utc      '2024-11-04 23:11:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1104}' 
#
_entry.id    7VR8 
#
_exptl.entry_id    7VR8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VR8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               'complete point assembly' 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 353.48415 94.71584 0 
3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 94.71584 353.48415 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 412 n n 
P O14 PC1 doub 413 n n 
P O13 PC1 sing 414 n n 
P O11 PC1 sing 415 n n 
O13 C11 PC1 sing 416 n n 
C11 C12 PC1 sing 417 n n 
C11 H111 PC1 sing 418 n n 
C11 H112 PC1 sing 419 n n 
C12 N PC1 sing 420 n n 
C12 H121 PC1 sing 421 n n 
C12 H122 PC1 sing 422 n n 
N C13 PC1 sing 423 n n 
N C14 PC1 sing 424 n n 
N C15 PC1 sing 425 n n 
C13 H131 PC1 sing 426 n n 
C13 H132 PC1 sing 427 n n 
C13 H133 PC1 sing 428 n n 
C14 H141 PC1 sing 429 n n 
C14 H142 PC1 sing 430 n n 
C14 H143 PC1 sing 431 n n 
C15 H151 PC1 sing 432 n n 
C15 H152 PC1 sing 433 n n 
C15 H153 PC1 sing 434 n n 
O11 C1 PC1 sing 435 n n 
C1 C2 PC1 sing 436 n n 
C1 H11 PC1 sing 437 n n 
C1 H12 PC1 sing 438 n n 
C2 O21 PC1 sing 439 n n 
C2 C3 PC1 sing 440 n n 
C2 H2 PC1 sing 441 n n 
O21 C21 PC1 sing 442 n n 
C21 O22 PC1 doub 443 n n 
C21 C22 PC1 sing 444 n n 
C22 C23 PC1 sing 445 n n 
C22 H221 PC1 sing 446 n n 
C22 H222 PC1 sing 447 n n 
C23 C24 PC1 sing 448 n n 
C23 H231 PC1 sing 449 n n 
C23 H232 PC1 sing 450 n n 
C24 C25 PC1 sing 451 n n 
C24 H241 PC1 sing 452 n n 
C24 H242 PC1 sing 453 n n 
C25 C26 PC1 sing 454 n n 
C25 H251 PC1 sing 455 n n 
C25 H252 PC1 sing 456 n n 
C26 C27 PC1 sing 457 n n 
C26 H261 PC1 sing 458 n n 
C26 H262 PC1 sing 459 n n 
C27 C28 PC1 sing 460 n n 
C27 H271 PC1 sing 461 n n 
C27 H272 PC1 sing 462 n n 
C28 C29 PC1 sing 463 n n 
C28 H281 PC1 sing 464 n n 
C28 H282 PC1 sing 465 n n 
C29 C2A PC1 sing 466 n n 
C29 H291 PC1 sing 467 n n 
C29 H292 PC1 sing 468 n n 
C2A C2B PC1 sing 469 n n 
C2A H2A1 PC1 sing 470 n n 
C2A H2A2 PC1 sing 471 n n 
C2B C2C PC1 sing 472 n n 
C2B H2B1 PC1 sing 473 n n 
C2B H2B2 PC1 sing 474 n n 
C2C C2D PC1 sing 475 n n 
C2C H2C1 PC1 sing 476 n n 
C2C H2C2 PC1 sing 477 n n 
C2D C2E PC1 sing 478 n n 
C2D H2D1 PC1 sing 479 n n 
C2D H2D2 PC1 sing 480 n n 
C2E C2F PC1 sing 481 n n 
C2E H2E1 PC1 sing 482 n n 
C2E H2E2 PC1 sing 483 n n 
C2F C2G PC1 sing 484 n n 
C2F H2F1 PC1 sing 485 n n 
C2F H2F2 PC1 sing 486 n n 
C2G C2H PC1 sing 487 n n 
C2G H2G1 PC1 sing 488 n n 
C2G H2G2 PC1 sing 489 n n 
C2H C2I PC1 sing 490 n n 
C2H H2H1 PC1 sing 491 n n 
C2H H2H2 PC1 sing 492 n n 
C2I H2I1 PC1 sing 493 n n 
C2I H2I2 PC1 sing 494 n n 
C2I H2I3 PC1 sing 495 n n 
C3 O31 PC1 sing 496 n n 
C3 H31 PC1 sing 497 n n 
C3 H32 PC1 sing 498 n n 
O31 C31 PC1 sing 499 n n 
C31 O32 PC1 doub 500 n n 
C31 C32 PC1 sing 501 n n 
C32 C33 PC1 sing 502 n n 
C32 H321 PC1 sing 503 n n 
C32 H322 PC1 sing 504 n n 
C33 C34 PC1 sing 505 n n 
C33 H331 PC1 sing 506 n n 
C33 H332 PC1 sing 507 n n 
C34 C35 PC1 sing 508 n n 
C34 H341 PC1 sing 509 n n 
C34 H342 PC1 sing 510 n n 
C35 C36 PC1 sing 511 n n 
C35 H351 PC1 sing 512 n n 
C35 H352 PC1 sing 513 n n 
C36 C37 PC1 sing 514 n n 
C36 H361 PC1 sing 515 n n 
C36 H362 PC1 sing 516 n n 
C37 C38 PC1 sing 517 n n 
C37 H371 PC1 sing 518 n n 
C37 H372 PC1 sing 519 n n 
C38 C39 PC1 sing 520 n n 
C38 H381 PC1 sing 521 n n 
C38 H382 PC1 sing 522 n n 
C39 C3A PC1 sing 523 n n 
C39 H391 PC1 sing 524 n n 
C39 H392 PC1 sing 525 n n 
C3A C3B PC1 sing 526 n n 
C3A H3A1 PC1 sing 527 n n 
C3A H3A2 PC1 sing 528 n n 
C3B C3C PC1 sing 529 n n 
C3B H3B1 PC1 sing 530 n n 
C3B H3B2 PC1 sing 531 n n 
C3C C3D PC1 sing 532 n n 
C3C H3C1 PC1 sing 533 n n 
C3C H3C2 PC1 sing 534 n n 
C3D C3E PC1 sing 535 n n 
C3D H3D1 PC1 sing 536 n n 
C3D H3D2 PC1 sing 537 n n 
C3E C3F PC1 sing 538 n n 
C3E H3E1 PC1 sing 539 n n 
C3E H3E2 PC1 sing 540 n n 
C3F C3G PC1 sing 541 n n 
C3F H3F1 PC1 sing 542 n n 
C3F H3F2 PC1 sing 543 n n 
C3G C3H PC1 sing 544 n n 
C3G H3G1 PC1 sing 545 n n 
C3G H3G2 PC1 sing 546 n n 
C3H C3I PC1 sing 547 n n 
C3H H3H1 PC1 sing 548 n n 
C3H H3H2 PC1 sing 549 n n 
C3I H3I1 PC1 sing 550 n n 
C3I H3I2 PC1 sing 551 n n 
C3I H3I3 PC1 sing 552 n n 
#
_atom_sites.entry_id                     7VR8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9Z9 A 1 1101 1101 9Z9 9Z9 . 
C 3 CLR A 1 1102 1201 CLR CLR . 
D 4 PC1 A 1 1103 1203 PC1 PC1 . 
E 4 PC1 A 1 1104 1204 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . E 4 125.665 134.727 152.136 1 224.17 ? O12 PC1 1104 A 1 
HETATM 2 P P PC1 . . . E 4 125.709 135.95 153.001 1 251.58 ? P PC1 1104 A 1 
HETATM 3 O O14 PC1 . . . E 4 125.09 135.896 154.369 1 221.9 ? O14 PC1 1104 A 1 
HETATM 4 O O13 PC1 . . . E 4 125.094 137.217 152.216 1 292.45 ? O13 PC1 1104 A 1 
HETATM 5 C C11 PC1 . . . E 4 125.659 137.644 150.96 1 311.67 ? C11 PC1 1104 A 1 
HETATM 6 C C12 PC1 . . . E 4 125.357 136.656 149.854 1 304.62 ? C12 PC1 1104 A 1 
HETATM 7 N N PC1 . . . E 4 125.481 137.132 148.415 1 302.62 ? N PC1 1104 A 1 
HETATM 8 C C13 PC1 . . . E 4 126.917 137.446 148.123 1 295.64 ? C13 PC1 1104 A 1 
HETATM 9 C C14 PC1 . . . E 4 125.09 136.009 147.51 1 301.08 ? C14 PC1 1104 A 1 
HETATM 10 C C15 PC1 . . . E 4 124.656 138.363 148.105 1 303.4 ? C15 PC1 1104 A 1 
HETATM 11 O O11 PC1 . . . E 4 127.241 136.386 153.214 1 283.38 ? O11 PC1 1104 A 1 
HETATM 12 C C1 PC1 . . . E 4 127.544 137.529 154.045 1 315.47 ? C1 PC1 1104 A 1 
HETATM 13 C C2 PC1 . . . E 4 128.54 137.117 155.106 1 283.71 ? C2 PC1 1104 A 1 
HETATM 14 O O21 PC1 . . . E 4 129.76 136.653 154.445 1 281.73 ? O21 PC1 1104 A 1 
HETATM 15 C C21 PC1 . . . E 4 130.404 137.493 153.635 1 271.66 ? C21 PC1 1104 A 1 
HETATM 16 O O22 PC1 . . . E 4 130.353 137.349 152.449 1 270.56 ? O22 PC1 1104 A 1 
HETATM 17 C C22 PC1 . . . E 4 131.161 138.539 154.373 1 262.98 ? C22 PC1 1104 A 1 
HETATM 18 C C23 PC1 . . . E 4 131.98 139.439 153.483 1 272.6 ? C23 PC1 1104 A 1 
HETATM 19 C C24 PC1 . . . E 4 132.894 140.36 154.254 1 265.78 ? C24 PC1 1104 A 1 
HETATM 20 C C25 PC1 . . . E 4 134.032 139.711 155.009 1 221.75 ? C25 PC1 1104 A 1 
HETATM 21 C C26 PC1 . . . E 4 134.739 140.618 155.99 1 191.78 ? C26 PC1 1104 A 1 
HETATM 22 C C27 PC1 . . . E 4 135.585 139.886 156.974 1 178.07 ? C27 PC1 1104 A 1 
HETATM 23 C C28 PC1 . . . E 4 134.812 138.953 157.835 1 170.71 ? C28 PC1 1104 A 1 
HETATM 24 C C29 PC1 . . . E 4 134.745 137.518 157.321 1 157.65 ? C29 PC1 1104 A 1 
HETATM 25 C C2A PC1 . . . E 4 135.982 136.771 157.298 1 153.1 ? C2A PC1 1104 A 1 
HETATM 26 C C2B PC1 . . . E 4 135.769 135.266 156.921 1 160.82 ? C2B PC1 1104 A 1 
HETATM 27 C C2C PC1 . . . E 4 135.725 135.028 155.398 1 170.61 ? C2C PC1 1104 A 1 
HETATM 28 C C2D PC1 . . . E 4 134.856 133.91 154.857 1 149.28 ? C2D PC1 1104 A 1 
HETATM 29 C C2E PC1 . . . E 4 134.393 134.159 153.432 1 160.7 ? C2E PC1 1104 A 1 
HETATM 30 C C2F PC1 . . . E 4 133.178 135.075 153.276 1 184.19 ? C2F PC1 1104 A 1 
HETATM 31 C C2G PC1 . . . E 4 132.757 135.247 151.829 1 201.91 ? C2G PC1 1104 A 1 
HETATM 32 C C2H PC1 . . . E 4 133.516 136.343 151.117 1 206.25 ? C2H PC1 1104 A 1 
HETATM 33 C C2I PC1 . . . E 4 133.202 136.504 149.642 1 181.76 ? C2I PC1 1104 A 1 
HETATM 34 C C3 PC1 . . . E 4 128.018 136.041 156.027 1 252.9 ? C3 PC1 1104 A 1 
HETATM 35 O O31 PC1 . . . E 4 128.938 135.915 157.14 1 257.02 ? O31 PC1 1104 A 1 
HETATM 36 C C31 PC1 . . . E 4 128.976 134.764 157.814 1 265.72 ? C31 PC1 1104 A 1 
HETATM 37 O O32 PC1 . . . E 4 129.003 133.683 157.282 1 278.78 ? O32 PC1 1104 A 1 
HETATM 38 C C32 PC1 . . . E 4 129.049 135.016 159.291 1 259.99 ? C32 PC1 1104 A 1 
HETATM 39 C C33 PC1 . . . E 4 128.941 133.778 160.122 1 266.87 ? C33 PC1 1104 A 1 
HETATM 40 C C34 PC1 . . . E 4 129.014 134.077 161.605 1 272.54 ? C34 PC1 1104 A 1 
HETATM 41 C C35 PC1 . . . E 4 127.736 134.639 162.185 1 294.85 ? C35 PC1 1104 A 1 
HETATM 42 C C36 PC1 . . . E 4 127.859 135.114 163.596 1 292.45 ? C36 PC1 1104 A 1 
HETATM 43 C C37 PC1 . . . E 4 128.361 134.121 164.631 1 264.04 ? C37 PC1 1104 A 1 
HETATM 44 C C38 PC1 . . . E 4 127.519 132.912 164.89 1 260.97 ? C38 PC1 1104 A 1 
HETATM 45 C C39 PC1 . . . E 4 128.087 131.971 165.918 1 238.09 ? C39 PC1 1104 A 1 
HETATM 46 C C3A PC1 . . . E 4 127.322 130.661 166.097 1 211.44 ? C3A PC1 1104 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           46 
#