data_7VRH # _model_server_result.job_id UlKTVZzlQGu4yxjVMvaw-Q _model_server_result.datetime_utc '2024-11-28 05:57:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vrh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7VRH # _exptl.entry_id 7VRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-HYROXYETHOXYMETHYLGUANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.15 _cell.angle_gamma 90 _cell.entry_id 7VRH _cell.length_a 113.083 _cell.length_b 55.473 _cell.length_c 67.792 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,H,I 1 1 C,G,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -14.717884 0 202.84275 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # _chem_comp.formula 'C8 H11 N5 O3' _chem_comp.formula_weight 225.205 _chem_comp.id AC2 _chem_comp.mon_nstd_flag . _chem_comp.name 9-HYROXYETHOXYMETHYLGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3' O3' AC2 sing 1 n n C3' C2' AC2 sing 2 n n C3' "H3'1" AC2 sing 3 n n C3' "H3'2" AC2 sing 4 n n O3' "HO'3" AC2 sing 5 n n C2' O1' AC2 sing 6 n n C2' "H2'1" AC2 sing 7 n n C2' "H2'2" AC2 sing 8 n n O1' C1' AC2 sing 9 n n C1' N9 AC2 sing 10 n n C1' "H1'1" AC2 sing 11 n n C1' "H1'2" AC2 sing 12 n n N9 C8 AC2 sing 13 n y N9 C4 AC2 sing 14 n y C8 N7 AC2 doub 15 n y C8 H8 AC2 sing 16 n n N7 C5 AC2 sing 17 n y C5 C6 AC2 sing 18 n n C5 C4 AC2 doub 19 n y C6 O6 AC2 doub 20 n n C6 N1 AC2 sing 21 n n N1 C2 AC2 sing 22 n n N1 HN1 AC2 sing 23 n n C2 N2 AC2 sing 24 n n C2 N3 AC2 doub 25 n n N2 HN21 AC2 sing 26 n n N2 HN22 AC2 sing 27 n n N3 C4 AC2 sing 28 n n # _atom_sites.entry_id 7VRH _atom_sites.fract_transf_matrix[1][1] 0.008843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000641 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 AC2 A 1 301 301 AC2 AC2 . E 2 AC2 A 1 302 201 AC2 AC2 . F 3 DTT B 1 201 201 DTT DTT . G 4 SO4 C 1 201 1 SO4 SO4 . H 5 HOH A 1 401 109 HOH HOH . H 5 HOH A 2 402 117 HOH HOH . H 5 HOH A 3 403 128 HOH HOH . H 5 HOH A 4 404 111 HOH HOH . H 5 HOH A 5 405 36 HOH HOH . H 5 HOH A 6 406 46 HOH HOH . H 5 HOH A 7 407 29 HOH HOH . H 5 HOH A 8 408 95 HOH HOH . H 5 HOH A 9 409 149 HOH HOH . H 5 HOH A 10 410 89 HOH HOH . H 5 HOH A 11 411 122 HOH HOH . H 5 HOH A 12 412 20 HOH HOH . H 5 HOH A 13 413 121 HOH HOH . H 5 HOH A 14 414 39 HOH HOH . H 5 HOH A 15 415 4 HOH HOH . H 5 HOH A 16 416 76 HOH HOH . H 5 HOH A 17 417 41 HOH HOH . H 5 HOH A 18 418 60 HOH HOH . H 5 HOH A 19 419 148 HOH HOH . H 5 HOH A 20 420 40 HOH HOH . H 5 HOH A 21 421 70 HOH HOH . H 5 HOH A 22 422 103 HOH HOH . H 5 HOH A 23 423 53 HOH HOH . H 5 HOH A 24 424 6 HOH HOH . H 5 HOH A 25 425 118 HOH HOH . H 5 HOH A 26 426 75 HOH HOH . H 5 HOH A 27 427 73 HOH HOH . H 5 HOH A 28 428 55 HOH HOH . H 5 HOH A 29 429 79 HOH HOH . H 5 HOH A 30 430 43 HOH HOH . H 5 HOH A 31 431 58 HOH HOH . H 5 HOH A 32 432 145 HOH HOH . H 5 HOH A 33 433 71 HOH HOH . H 5 HOH A 34 434 157 HOH HOH . H 5 HOH A 35 435 18 HOH HOH . H 5 HOH A 36 436 57 HOH HOH . H 5 HOH A 37 437 9 HOH HOH . H 5 HOH A 38 438 44 HOH HOH . H 5 HOH A 39 439 52 HOH HOH . H 5 HOH A 40 440 19 HOH HOH . H 5 HOH A 41 441 10 HOH HOH . H 5 HOH A 42 442 21 HOH HOH . H 5 HOH A 43 443 125 HOH HOH . H 5 HOH A 44 444 113 HOH HOH . H 5 HOH A 45 445 116 HOH HOH . H 5 HOH A 46 446 34 HOH HOH . H 5 HOH A 47 447 136 HOH HOH . H 5 HOH A 48 448 151 HOH HOH . H 5 HOH A 49 449 35 HOH HOH . H 5 HOH A 50 450 132 HOH HOH . H 5 HOH A 51 451 77 HOH HOH . H 5 HOH A 52 452 90 HOH HOH . H 5 HOH A 53 453 106 HOH HOH . H 5 HOH A 54 454 146 HOH HOH . H 5 HOH A 55 455 11 HOH HOH . H 5 HOH A 56 456 153 HOH HOH . H 5 HOH A 57 457 156 HOH HOH . H 5 HOH A 58 458 150 HOH HOH . H 5 HOH A 59 459 123 HOH HOH . H 5 HOH A 60 460 143 HOH HOH . H 5 HOH A 61 461 16 HOH HOH . H 5 HOH A 62 462 78 HOH HOH . H 5 HOH A 63 463 63 HOH HOH . H 5 HOH A 64 464 142 HOH HOH . H 5 HOH A 65 465 101 HOH HOH . H 5 HOH A 66 466 147 HOH HOH . H 5 HOH A 67 467 96 HOH HOH . H 5 HOH A 68 468 38 HOH HOH . H 5 HOH A 69 469 139 HOH HOH . H 5 HOH A 70 470 115 HOH HOH . I 5 HOH B 1 301 162 HOH HOH . I 5 HOH B 2 302 62 HOH HOH . I 5 HOH B 3 303 93 HOH HOH . I 5 HOH B 4 304 133 HOH HOH . I 5 HOH B 5 305 27 HOH HOH . I 5 HOH B 6 306 92 HOH HOH . I 5 HOH B 7 307 24 HOH HOH . I 5 HOH B 8 308 66 HOH HOH . I 5 HOH B 9 309 108 HOH HOH . I 5 HOH B 10 310 98 HOH HOH . I 5 HOH B 11 311 23 HOH HOH . I 5 HOH B 12 312 82 HOH HOH . I 5 HOH B 13 313 119 HOH HOH . I 5 HOH B 14 314 97 HOH HOH . I 5 HOH B 15 315 37 HOH HOH . I 5 HOH B 16 316 7 HOH HOH . I 5 HOH B 17 317 5 HOH HOH . I 5 HOH B 18 318 26 HOH HOH . I 5 HOH B 19 319 80 HOH HOH . I 5 HOH B 20 320 42 HOH HOH . I 5 HOH B 21 321 59 HOH HOH . I 5 HOH B 22 322 140 HOH HOH . I 5 HOH B 23 323 91 HOH HOH . I 5 HOH B 24 324 68 HOH HOH . I 5 HOH B 25 325 81 HOH HOH . I 5 HOH B 26 326 72 HOH HOH . I 5 HOH B 27 327 141 HOH HOH . I 5 HOH B 28 328 61 HOH HOH . I 5 HOH B 29 329 3 HOH HOH . I 5 HOH B 30 330 120 HOH HOH . I 5 HOH B 31 331 144 HOH HOH . I 5 HOH B 32 332 13 HOH HOH . I 5 HOH B 33 333 32 HOH HOH . I 5 HOH B 34 334 88 HOH HOH . I 5 HOH B 35 335 124 HOH HOH . I 5 HOH B 36 336 138 HOH HOH . I 5 HOH B 37 337 25 HOH HOH . I 5 HOH B 38 338 33 HOH HOH . I 5 HOH B 39 339 102 HOH HOH . I 5 HOH B 40 340 51 HOH HOH . I 5 HOH B 41 341 45 HOH HOH . I 5 HOH B 42 342 130 HOH HOH . I 5 HOH B 43 343 110 HOH HOH . I 5 HOH B 44 344 152 HOH HOH . I 5 HOH B 45 345 69 HOH HOH . I 5 HOH B 46 346 83 HOH HOH . I 5 HOH B 47 347 107 HOH HOH . J 5 HOH C 1 301 131 HOH HOH . J 5 HOH C 2 302 50 HOH HOH . J 5 HOH C 3 303 65 HOH HOH . J 5 HOH C 4 304 134 HOH HOH . J 5 HOH C 5 305 126 HOH HOH . J 5 HOH C 6 306 84 HOH HOH . J 5 HOH C 7 307 87 HOH HOH . J 5 HOH C 8 308 12 HOH HOH . J 5 HOH C 9 309 17 HOH HOH . J 5 HOH C 10 310 137 HOH HOH . J 5 HOH C 11 311 30 HOH HOH . J 5 HOH C 12 312 54 HOH HOH . J 5 HOH C 13 313 47 HOH HOH . J 5 HOH C 14 314 114 HOH HOH . J 5 HOH C 15 315 49 HOH HOH . J 5 HOH C 16 316 112 HOH HOH . J 5 HOH C 17 317 22 HOH HOH . J 5 HOH C 18 318 67 HOH HOH . J 5 HOH C 19 319 1 HOH HOH . J 5 HOH C 20 320 2 HOH HOH . J 5 HOH C 21 321 160 HOH HOH . J 5 HOH C 22 322 28 HOH HOH . J 5 HOH C 23 323 85 HOH HOH . J 5 HOH C 24 324 86 HOH HOH . J 5 HOH C 25 325 31 HOH HOH . J 5 HOH C 26 326 8 HOH HOH . J 5 HOH C 27 327 64 HOH HOH . J 5 HOH C 28 328 94 HOH HOH . J 5 HOH C 29 329 14 HOH HOH . J 5 HOH C 30 330 56 HOH HOH . J 5 HOH C 31 331 74 HOH HOH . J 5 HOH C 32 332 48 HOH HOH . J 5 HOH C 33 333 15 HOH HOH . J 5 HOH C 34 334 129 HOH HOH . J 5 HOH C 35 335 99 HOH HOH . J 5 HOH C 36 336 135 HOH HOH . J 5 HOH C 37 337 161 HOH HOH . J 5 HOH C 38 338 158 HOH HOH . J 5 HOH C 39 339 154 HOH HOH . J 5 HOH C 40 340 155 HOH HOH . J 5 HOH C 41 341 100 HOH HOH . J 5 HOH C 42 342 105 HOH HOH . J 5 HOH C 43 343 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3' AC2 . . . D 2 16.982 7.311 60.064 1 36.39 ? C3' AC2 301 A 1 HETATM 2 O O3' AC2 . . . D 2 16.713 6.032 60.705 1 29.28 ? O3' AC2 301 A 1 HETATM 3 C C2' AC2 . . . D 2 16.308 7.541 58.73 1 32.94 ? C2' AC2 301 A 1 HETATM 4 O O1' AC2 . . . D 2 16.056 8.947 58.575 1 50.05 ? O1' AC2 301 A 1 HETATM 5 C C1' AC2 . . . D 2 15.458 9.313 57.354 1 39.76 ? C1' AC2 301 A 1 HETATM 6 N N9 AC2 . . . D 2 14.009 9.555 57.491 1 42.86 ? N9 AC2 301 A 1 HETATM 7 C C8 AC2 . . . D 2 13.139 8.736 58.132 1 42.51 ? C8 AC2 301 A 1 HETATM 8 N N7 AC2 . . . D 2 11.877 9.087 57.957 1 42.53 ? N7 AC2 301 A 1 HETATM 9 C C5 AC2 . . . D 2 11.93 10.219 57.153 1 46.5 ? C5 AC2 301 A 1 HETATM 10 C C6 AC2 . . . D 2 10.841 11.033 56.592 1 48.76 ? C6 AC2 301 A 1 HETATM 11 O O6 AC2 . . . D 2 9.643 10.719 56.506 1 48.47 ? O6 AC2 301 A 1 HETATM 12 N N1 AC2 . . . D 2 11.302 12.193 55.988 1 50.66 ? N1 AC2 301 A 1 HETATM 13 C C2 AC2 . . . D 2 12.558 12.29 55.547 1 48.8 ? C2 AC2 301 A 1 HETATM 14 N N2 AC2 . . . D 2 12.822 13.063 54.49 1 55.59 ? N2 AC2 301 A 1 HETATM 15 N N3 AC2 . . . D 2 13.618 11.609 56.103 1 48.47 ? N3 AC2 301 A 1 HETATM 16 C C4 AC2 . . . D 2 13.248 10.539 56.888 1 48.12 ? C4 AC2 301 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #