data_7VRO # _model_server_result.job_id VDSPG-B8AR5zUNCyUUZPwA _model_server_result.datetime_utc '2024-11-08 21:11:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 7VRO # _exptl.entry_id 7VRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.164 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THEOBROMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.88 _cell.angle_gamma 90 _cell.entry_id 7VRO _cell.length_a 114.129 _cell.length_b 55.489 _cell.length_c 67.659 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,L,M 1 1 C,K,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -13.734851 0 202.511769 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 H N N ? 2 K N N # _chem_comp.formula 'C7 H8 N4 O2' _chem_comp.formula_weight 180.164 _chem_comp.id 37T _chem_comp.mon_nstd_flag . _chem_comp.name THEOBROMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIMETHYLXANTHINE;3,7-DIMETHYLPURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 37T doub 1 n n C6 N1 37T sing 2 n n C6 C5 37T sing 3 n n N1 C2 37T sing 4 n n N1 HN1 37T sing 5 n n C5 C4 37T doub 6 n n C5 N7 37T sing 7 n n N7 C8 37T sing 8 n n N7 C13 37T sing 9 n n C13 H131 37T sing 10 n n C13 H132 37T sing 11 n n C13 H133 37T sing 12 n n C8 N9 37T doub 13 n n C8 H8 37T sing 14 n n N9 C4 37T sing 15 n n C4 N3 37T sing 16 n n N3 C12 37T sing 17 n n N3 C2 37T sing 18 n n C12 H121 37T sing 19 n n C12 H122 37T sing 20 n n C12 H123 37T sing 21 n n C2 O2 37T doub 22 n n # _atom_sites.entry_id 7VRO _atom_sites.fract_transf_matrix[1][1] 0.008762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000595 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 37T A 1 201 201 37T 37T . E 2 37T A 1 202 301 37T 37T . F 3 SO4 A 1 203 2 SO4 SO4 . G 3 SO4 A 1 204 3 SO4 SO4 . H 2 37T B 1 201 201 37T 37T . I 3 SO4 B 1 202 1 SO4 SO4 . J 3 SO4 B 1 203 4 SO4 SO4 . K 2 37T C 1 201 201 37T 37T . L 4 HOH A 1 301 168 HOH HOH . L 4 HOH A 2 302 35 HOH HOH . L 4 HOH A 3 303 157 HOH HOH . L 4 HOH A 4 304 38 HOH HOH . L 4 HOH A 5 305 19 HOH HOH . L 4 HOH A 6 306 165 HOH HOH . L 4 HOH A 7 307 132 HOH HOH . L 4 HOH A 8 308 166 HOH HOH . L 4 HOH A 9 309 151 HOH HOH . L 4 HOH A 10 310 12 HOH HOH . L 4 HOH A 11 311 11 HOH HOH . L 4 HOH A 12 312 76 HOH HOH . L 4 HOH A 13 313 130 HOH HOH . L 4 HOH A 14 314 2 HOH HOH . L 4 HOH A 15 315 1 HOH HOH . L 4 HOH A 16 316 29 HOH HOH . L 4 HOH A 17 317 81 HOH HOH . L 4 HOH A 18 318 20 HOH HOH . L 4 HOH A 19 319 5 HOH HOH . L 4 HOH A 20 320 66 HOH HOH . L 4 HOH A 21 321 25 HOH HOH . L 4 HOH A 22 322 21 HOH HOH . L 4 HOH A 23 323 85 HOH HOH . L 4 HOH A 24 324 6 HOH HOH . L 4 HOH A 25 325 60 HOH HOH . L 4 HOH A 26 326 64 HOH HOH . L 4 HOH A 27 327 58 HOH HOH . L 4 HOH A 28 328 24 HOH HOH . L 4 HOH A 29 329 49 HOH HOH . L 4 HOH A 30 330 106 HOH HOH . L 4 HOH A 31 331 159 HOH HOH . L 4 HOH A 32 332 65 HOH HOH . L 4 HOH A 33 333 96 HOH HOH . L 4 HOH A 34 334 56 HOH HOH . L 4 HOH A 35 335 137 HOH HOH . L 4 HOH A 36 336 79 HOH HOH . L 4 HOH A 37 337 92 HOH HOH . L 4 HOH A 38 338 112 HOH HOH . L 4 HOH A 39 339 15 HOH HOH . L 4 HOH A 40 340 119 HOH HOH . L 4 HOH A 41 341 54 HOH HOH . L 4 HOH A 42 342 176 HOH HOH . L 4 HOH A 43 343 102 HOH HOH . L 4 HOH A 44 344 170 HOH HOH . L 4 HOH A 45 345 104 HOH HOH . L 4 HOH A 46 346 77 HOH HOH . L 4 HOH A 47 347 45 HOH HOH . L 4 HOH A 48 348 123 HOH HOH . L 4 HOH A 49 349 155 HOH HOH . L 4 HOH A 50 350 59 HOH HOH . L 4 HOH A 51 351 105 HOH HOH . L 4 HOH A 52 352 153 HOH HOH . L 4 HOH A 53 353 83 HOH HOH . L 4 HOH A 54 354 174 HOH HOH . L 4 HOH A 55 355 75 HOH HOH . L 4 HOH A 56 356 152 HOH HOH . L 4 HOH A 57 357 162 HOH HOH . L 4 HOH A 58 358 154 HOH HOH . L 4 HOH A 59 359 133 HOH HOH . L 4 HOH A 60 360 198 HOH HOH . L 4 HOH A 61 361 149 HOH HOH . L 4 HOH A 62 362 200 HOH HOH . L 4 HOH A 63 363 124 HOH HOH . L 4 HOH A 64 364 46 HOH HOH . L 4 HOH A 65 365 22 HOH HOH . L 4 HOH A 66 366 43 HOH HOH . L 4 HOH A 67 367 44 HOH HOH . L 4 HOH A 68 368 97 HOH HOH . L 4 HOH A 69 369 110 HOH HOH . L 4 HOH A 70 370 94 HOH HOH . L 4 HOH A 71 371 172 HOH HOH . L 4 HOH A 72 372 208 HOH HOH . L 4 HOH A 73 373 196 HOH HOH . L 4 HOH A 74 374 111 HOH HOH . L 4 HOH A 75 375 127 HOH HOH . M 4 HOH B 1 301 52 HOH HOH . M 4 HOH B 2 302 209 HOH HOH . M 4 HOH B 3 303 142 HOH HOH . M 4 HOH B 4 304 13 HOH HOH . M 4 HOH B 5 305 101 HOH HOH . M 4 HOH B 6 306 158 HOH HOH . M 4 HOH B 7 307 82 HOH HOH . M 4 HOH B 8 308 179 HOH HOH . M 4 HOH B 9 309 17 HOH HOH . M 4 HOH B 10 310 160 HOH HOH . M 4 HOH B 11 311 8 HOH HOH . M 4 HOH B 12 312 50 HOH HOH . M 4 HOH B 13 313 80 HOH HOH . M 4 HOH B 14 314 167 HOH HOH . M 4 HOH B 15 315 62 HOH HOH . M 4 HOH B 16 316 9 HOH HOH . M 4 HOH B 17 317 70 HOH HOH . M 4 HOH B 18 318 108 HOH HOH . M 4 HOH B 19 319 67 HOH HOH . M 4 HOH B 20 320 4 HOH HOH . M 4 HOH B 21 321 32 HOH HOH . M 4 HOH B 22 322 34 HOH HOH . M 4 HOH B 23 323 136 HOH HOH . M 4 HOH B 24 324 113 HOH HOH . M 4 HOH B 25 325 7 HOH HOH . M 4 HOH B 26 326 84 HOH HOH . M 4 HOH B 27 327 150 HOH HOH . M 4 HOH B 28 328 89 HOH HOH . M 4 HOH B 29 329 61 HOH HOH . M 4 HOH B 30 330 74 HOH HOH . M 4 HOH B 31 331 40 HOH HOH . M 4 HOH B 32 332 148 HOH HOH . M 4 HOH B 33 333 14 HOH HOH . M 4 HOH B 34 334 117 HOH HOH . M 4 HOH B 35 335 98 HOH HOH . M 4 HOH B 36 336 99 HOH HOH . M 4 HOH B 37 337 3 HOH HOH . M 4 HOH B 38 338 72 HOH HOH . M 4 HOH B 39 339 114 HOH HOH . M 4 HOH B 40 340 27 HOH HOH . M 4 HOH B 41 341 115 HOH HOH . M 4 HOH B 42 342 63 HOH HOH . M 4 HOH B 43 343 47 HOH HOH . M 4 HOH B 44 344 91 HOH HOH . M 4 HOH B 45 345 23 HOH HOH . M 4 HOH B 46 346 28 HOH HOH . M 4 HOH B 47 347 182 HOH HOH . M 4 HOH B 48 348 194 HOH HOH . M 4 HOH B 49 349 57 HOH HOH . M 4 HOH B 50 350 197 HOH HOH . M 4 HOH B 51 351 100 HOH HOH . M 4 HOH B 52 352 175 HOH HOH . M 4 HOH B 53 353 103 HOH HOH . M 4 HOH B 54 354 181 HOH HOH . M 4 HOH B 55 355 169 HOH HOH . M 4 HOH B 56 356 143 HOH HOH . M 4 HOH B 57 357 55 HOH HOH . M 4 HOH B 58 358 120 HOH HOH . M 4 HOH B 59 359 126 HOH HOH . M 4 HOH B 60 360 140 HOH HOH . M 4 HOH B 61 361 141 HOH HOH . M 4 HOH B 62 362 156 HOH HOH . M 4 HOH B 63 363 122 HOH HOH . M 4 HOH B 64 364 211 HOH HOH . M 4 HOH B 65 365 144 HOH HOH . M 4 HOH B 66 366 121 HOH HOH . M 4 HOH B 67 367 146 HOH HOH . M 4 HOH B 68 368 195 HOH HOH . M 4 HOH B 69 369 134 HOH HOH . M 4 HOH B 70 370 177 HOH HOH . M 4 HOH B 71 371 178 HOH HOH . M 4 HOH B 72 372 205 HOH HOH . M 4 HOH B 73 373 147 HOH HOH . M 4 HOH B 74 374 135 HOH HOH . M 4 HOH B 75 375 173 HOH HOH . M 4 HOH B 76 376 180 HOH HOH . M 4 HOH B 77 377 90 HOH HOH . M 4 HOH B 78 378 171 HOH HOH . M 4 HOH B 79 379 145 HOH HOH . M 4 HOH B 80 380 206 HOH HOH . N 4 HOH C 1 301 139 HOH HOH . N 4 HOH C 2 302 184 HOH HOH . N 4 HOH C 3 303 210 HOH HOH . N 4 HOH C 4 304 185 HOH HOH . N 4 HOH C 5 305 16 HOH HOH . N 4 HOH C 6 306 193 HOH HOH . N 4 HOH C 7 307 31 HOH HOH . N 4 HOH C 8 308 88 HOH HOH . N 4 HOH C 9 309 71 HOH HOH . N 4 HOH C 10 310 26 HOH HOH . N 4 HOH C 11 311 30 HOH HOH . N 4 HOH C 12 312 39 HOH HOH . N 4 HOH C 13 313 68 HOH HOH . N 4 HOH C 14 314 125 HOH HOH . N 4 HOH C 15 315 48 HOH HOH . N 4 HOH C 16 316 116 HOH HOH . N 4 HOH C 17 317 118 HOH HOH . N 4 HOH C 18 318 51 HOH HOH . N 4 HOH C 19 319 41 HOH HOH . N 4 HOH C 20 320 18 HOH HOH . N 4 HOH C 21 321 69 HOH HOH . N 4 HOH C 22 322 10 HOH HOH . N 4 HOH C 23 323 93 HOH HOH . N 4 HOH C 24 324 73 HOH HOH . N 4 HOH C 25 325 86 HOH HOH . N 4 HOH C 26 326 53 HOH HOH . N 4 HOH C 27 327 190 HOH HOH . N 4 HOH C 28 328 138 HOH HOH . N 4 HOH C 29 329 201 HOH HOH . N 4 HOH C 30 330 87 HOH HOH . N 4 HOH C 31 331 191 HOH HOH . N 4 HOH C 32 332 33 HOH HOH . N 4 HOH C 33 333 78 HOH HOH . N 4 HOH C 34 334 183 HOH HOH . N 4 HOH C 35 335 107 HOH HOH . N 4 HOH C 36 336 36 HOH HOH . N 4 HOH C 37 337 212 HOH HOH . N 4 HOH C 38 338 37 HOH HOH . N 4 HOH C 39 339 207 HOH HOH . N 4 HOH C 40 340 42 HOH HOH . N 4 HOH C 41 341 163 HOH HOH . N 4 HOH C 42 342 199 HOH HOH . N 4 HOH C 43 343 202 HOH HOH . N 4 HOH C 44 344 164 HOH HOH . N 4 HOH C 45 345 161 HOH HOH . N 4 HOH C 46 346 128 HOH HOH . N 4 HOH C 47 347 186 HOH HOH . N 4 HOH C 48 348 129 HOH HOH . N 4 HOH C 49 349 192 HOH HOH . N 4 HOH C 50 350 188 HOH HOH . N 4 HOH C 51 351 204 HOH HOH . N 4 HOH C 52 352 203 HOH HOH . N 4 HOH C 53 353 109 HOH HOH . N 4 HOH C 54 354 189 HOH HOH . N 4 HOH C 55 355 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 37T . . . E 2 5.683 15.193 55.71 1 57.52 ? O6 37T 202 A 1 HETATM 2 C C6 37T . . . E 2 6.059 16.309 56.087 1 57.04 ? C6 37T 202 A 1 HETATM 3 N N1 37T . . . E 2 5.504 16.9 57.218 1 56.1 ? N1 37T 202 A 1 HETATM 4 C C5 37T . . . E 2 7.072 17.14 55.491 1 55.57 ? C5 37T 202 A 1 HETATM 5 N N7 37T . . . E 2 7.888 16.964 54.384 1 57.75 ? N7 37T 202 A 1 HETATM 6 C C13 37T . . . E 2 7.929 15.814 53.481 1 59.75 ? C13 37T 202 A 1 HETATM 7 C C8 37T . . . E 2 8.658 18.082 54.31 1 53.89 ? C8 37T 202 A 1 HETATM 8 N N9 37T . . . E 2 8.41 18.958 55.274 1 60.15 ? N9 37T 202 A 1 HETATM 9 C C4 37T . . . E 2 7.419 18.367 56.008 1 56.8 ? C4 37T 202 A 1 HETATM 10 N N3 37T . . . E 2 6.81 18.878 57.135 1 55.54 ? N3 37T 202 A 1 HETATM 11 C C12 37T . . . E 2 7.166 20.2 57.664 1 51.4 ? C12 37T 202 A 1 HETATM 12 C C2 37T . . . E 2 5.82 18.122 57.777 1 56.21 ? C2 37T 202 A 1 HETATM 13 O O2 37T . . . E 2 5.274 18.519 58.801 1 55.72 ? O2 37T 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #