data_7VRS # _model_server_result.job_id mCx47f2eOuwG1cpnO-6Otg _model_server_result.datetime_utc '2024-10-10 06:30:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vrs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 7VRS # _exptl.entry_id 7VRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VRS _cell.length_a 75.613 _cell.length_b 102.061 _cell.length_c 150.991 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 212 A CYS 190 1_555 D CAG ME9 . A ME9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? covale ? covale2 D CAE ME9 . A ME9 501 1_555 F S44 PNS . C PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? covale ? covale3 B SG CYS 212 B CYS 190 1_555 E CAH ME9 . B ME9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? covale ? covale4 C OG SER 66 C SER 47 1_555 F P24 PNS . C PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 291 n n O23 HOP1 PNS sing 292 n n P24 O25 PNS sing 293 n n P24 O26 PNS doub 294 n n P24 O27 PNS sing 295 n n O25 HOP2 PNS sing 296 n n O27 C28 PNS sing 297 n n C28 C29 PNS sing 298 n n C28 H282 PNS sing 299 n n C28 H281 PNS sing 300 n n C29 C30 PNS sing 301 n n C29 C31 PNS sing 302 n n C29 C32 PNS sing 303 n n C30 H303 PNS sing 304 n n C30 H302 PNS sing 305 n n C30 H301 PNS sing 306 n n C31 H313 PNS sing 307 n n C31 H312 PNS sing 308 n n C31 H311 PNS sing 309 n n C32 O33 PNS sing 310 n n C32 C34 PNS sing 311 n n C32 H32 PNS sing 312 n n O33 H33 PNS sing 313 n n C34 O35 PNS doub 314 n n C34 N36 PNS sing 315 n n N36 C37 PNS sing 316 n n N36 H36 PNS sing 317 n n C37 C38 PNS sing 318 n n C37 H372 PNS sing 319 n n C37 H371 PNS sing 320 n n C38 C39 PNS sing 321 n n C38 H382 PNS sing 322 n n C38 H381 PNS sing 323 n n C39 O40 PNS doub 324 n n C39 N41 PNS sing 325 n n N41 C42 PNS sing 326 n n N41 H41 PNS sing 327 n n C42 C43 PNS sing 328 n n C42 H422 PNS sing 329 n n C42 H421 PNS sing 330 n n C43 S44 PNS sing 331 n n C43 H431 PNS sing 332 n n C43 H432 PNS sing 333 n n S44 H44 PNS sing 334 n n # _atom_sites.entry_id 7VRS _atom_sites.fract_transf_matrix[1][1] 0.013225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ME9 A 1 501 505 ME9 ME9 . E 3 ME9 B 1 501 501 ME9 ME9 . F 4 PNS C 1 101 504 PNS PNS . G 5 HOH A 1 601 11 HOH HOH . G 5 HOH A 2 602 92 HOH HOH . G 5 HOH A 3 603 99 HOH HOH . G 5 HOH A 4 604 71 HOH HOH . G 5 HOH A 5 605 52 HOH HOH . G 5 HOH A 6 606 28 HOH HOH . G 5 HOH A 7 607 7 HOH HOH . G 5 HOH A 8 608 68 HOH HOH . G 5 HOH A 9 609 96 HOH HOH . G 5 HOH A 10 610 18 HOH HOH . G 5 HOH A 11 611 87 HOH HOH . G 5 HOH A 12 612 40 HOH HOH . G 5 HOH A 13 613 100 HOH HOH . G 5 HOH A 14 614 102 HOH HOH . G 5 HOH A 15 615 85 HOH HOH . G 5 HOH A 16 616 59 HOH HOH . G 5 HOH A 17 617 77 HOH HOH . G 5 HOH A 18 618 30 HOH HOH . G 5 HOH A 19 619 88 HOH HOH . G 5 HOH A 20 620 110 HOH HOH . G 5 HOH A 21 621 17 HOH HOH . G 5 HOH A 22 622 25 HOH HOH . G 5 HOH A 23 623 81 HOH HOH . G 5 HOH A 24 624 23 HOH HOH . G 5 HOH A 25 625 50 HOH HOH . G 5 HOH A 26 626 31 HOH HOH . G 5 HOH A 27 627 93 HOH HOH . G 5 HOH A 28 628 108 HOH HOH . G 5 HOH A 29 629 24 HOH HOH . G 5 HOH A 30 630 14 HOH HOH . G 5 HOH A 31 631 3 HOH HOH . G 5 HOH A 32 632 116 HOH HOH . G 5 HOH A 33 633 4 HOH HOH . G 5 HOH A 34 634 82 HOH HOH . G 5 HOH A 35 635 49 HOH HOH . G 5 HOH A 36 636 115 HOH HOH . G 5 HOH A 37 637 19 HOH HOH . G 5 HOH A 38 638 22 HOH HOH . G 5 HOH A 39 639 5 HOH HOH . G 5 HOH A 40 640 74 HOH HOH . G 5 HOH A 41 641 9 HOH HOH . G 5 HOH A 42 642 46 HOH HOH . G 5 HOH A 43 643 39 HOH HOH . G 5 HOH A 44 644 119 HOH HOH . G 5 HOH A 45 645 37 HOH HOH . G 5 HOH A 46 646 61 HOH HOH . G 5 HOH A 47 647 98 HOH HOH . G 5 HOH A 48 648 62 HOH HOH . G 5 HOH A 49 649 38 HOH HOH . G 5 HOH A 50 650 2 HOH HOH . G 5 HOH A 51 651 122 HOH HOH . G 5 HOH A 52 652 36 HOH HOH . G 5 HOH A 53 653 65 HOH HOH . G 5 HOH A 54 654 66 HOH HOH . G 5 HOH A 55 655 16 HOH HOH . G 5 HOH A 56 656 32 HOH HOH . G 5 HOH A 57 657 72 HOH HOH . G 5 HOH A 58 658 27 HOH HOH . G 5 HOH A 59 659 121 HOH HOH . G 5 HOH A 60 660 1 HOH HOH . G 5 HOH A 61 661 97 HOH HOH . G 5 HOH A 62 662 114 HOH HOH . G 5 HOH A 63 663 91 HOH HOH . G 5 HOH A 64 664 123 HOH HOH . G 5 HOH A 65 665 53 HOH HOH . G 5 HOH A 66 666 54 HOH HOH . G 5 HOH A 67 667 117 HOH HOH . G 5 HOH A 68 668 44 HOH HOH . H 5 HOH B 1 601 43 HOH HOH . H 5 HOH B 2 602 95 HOH HOH . H 5 HOH B 3 603 89 HOH HOH . H 5 HOH B 4 604 57 HOH HOH . H 5 HOH B 5 605 56 HOH HOH . H 5 HOH B 6 606 73 HOH HOH . H 5 HOH B 7 607 79 HOH HOH . H 5 HOH B 8 608 6 HOH HOH . H 5 HOH B 9 609 48 HOH HOH . H 5 HOH B 10 610 70 HOH HOH . H 5 HOH B 11 611 101 HOH HOH . H 5 HOH B 12 612 103 HOH HOH . H 5 HOH B 13 613 76 HOH HOH . H 5 HOH B 14 614 21 HOH HOH . H 5 HOH B 15 615 51 HOH HOH . H 5 HOH B 16 616 63 HOH HOH . H 5 HOH B 17 617 107 HOH HOH . H 5 HOH B 18 618 106 HOH HOH . H 5 HOH B 19 619 112 HOH HOH . H 5 HOH B 20 620 60 HOH HOH . H 5 HOH B 21 621 111 HOH HOH . H 5 HOH B 22 622 105 HOH HOH . H 5 HOH B 23 623 10 HOH HOH . H 5 HOH B 24 624 86 HOH HOH . H 5 HOH B 25 625 12 HOH HOH . H 5 HOH B 26 626 84 HOH HOH . H 5 HOH B 27 627 42 HOH HOH . H 5 HOH B 28 628 75 HOH HOH . H 5 HOH B 29 629 55 HOH HOH . H 5 HOH B 30 630 69 HOH HOH . H 5 HOH B 31 631 29 HOH HOH . H 5 HOH B 32 632 35 HOH HOH . H 5 HOH B 33 633 58 HOH HOH . H 5 HOH B 34 634 83 HOH HOH . H 5 HOH B 35 635 47 HOH HOH . H 5 HOH B 36 636 118 HOH HOH . H 5 HOH B 37 637 80 HOH HOH . H 5 HOH B 38 638 109 HOH HOH . H 5 HOH B 39 639 78 HOH HOH . H 5 HOH B 40 640 67 HOH HOH . H 5 HOH B 41 641 8 HOH HOH . H 5 HOH B 42 642 15 HOH HOH . H 5 HOH B 43 643 90 HOH HOH . H 5 HOH B 44 644 26 HOH HOH . H 5 HOH B 45 645 13 HOH HOH . H 5 HOH B 46 646 94 HOH HOH . H 5 HOH B 47 647 120 HOH HOH . H 5 HOH B 48 648 64 HOH HOH . H 5 HOH B 49 649 41 HOH HOH . H 5 HOH B 50 650 34 HOH HOH . H 5 HOH B 51 651 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . F 4 -25.051 32.322 -11.402 1 48.82 ? O23 PNS 101 C 1 HETATM 2 P P24 PNS . . . F 4 -23.874 33.19 -11.837 1 49.02 ? P24 PNS 101 C 1 HETATM 3 O O26 PNS . . . F 4 -24.064 33.952 -13.15 1 53.9 ? O26 PNS 101 C 1 HETATM 4 O O27 PNS . . . F 4 -23.534 34.316 -10.714 1 60.11 ? O27 PNS 101 C 1 HETATM 5 C C28 PNS . . . F 4 -24.527 34.726 -9.733 1 51.76 ? C28 PNS 101 C 1 HETATM 6 C C29 PNS . . . F 4 -24.203 36.151 -9.289 1 50.48 ? C29 PNS 101 C 1 HETATM 7 C C30 PNS . . . F 4 -23.942 36.193 -7.783 1 47.55 ? C30 PNS 101 C 1 HETATM 8 C C31 PNS . . . F 4 -22.963 36.669 -10.025 1 48.63 ? C31 PNS 101 C 1 HETATM 9 C C32 PNS . . . F 4 -25.421 37.004 -9.626 1 53.33 ? C32 PNS 101 C 1 HETATM 10 O O33 PNS . . . F 4 -26.549 36.303 -9.107 1 52.19 ? O33 PNS 101 C 1 HETATM 11 C C34 PNS . . . F 4 -25.345 38.421 -9.092 1 54.33 ? C34 PNS 101 C 1 HETATM 12 O O35 PNS . . . F 4 -24.41 39.138 -9.429 1 57.75 ? O35 PNS 101 C 1 HETATM 13 N N36 PNS . . . F 4 -26.308 38.827 -8.273 1 62.22 ? N36 PNS 101 C 1 HETATM 14 C C37 PNS . . . F 4 -26.461 40.21 -7.818 1 64.45 ? C37 PNS 101 C 1 HETATM 15 C C38 PNS . . . F 4 -27.437 41.032 -8.665 1 64.71 ? C38 PNS 101 C 1 HETATM 16 C C39 PNS . . . F 4 -28.603 40.273 -9.288 1 81.11 ? C39 PNS 101 C 1 HETATM 17 O O40 PNS . . . F 4 -29.765 40.287 -8.814 1 64.14 ? O40 PNS 101 C 1 HETATM 18 N N41 PNS . . . F 4 -28.291 39.619 -10.42 1 79.98 ? N41 PNS 101 C 1 HETATM 19 C C42 PNS . . . F 4 -29.12 39.607 -11.614 1 82.23 ? C42 PNS 101 C 1 HETATM 20 C C43 PNS . . . F 4 -30.093 38.462 -11.628 1 75.45 ? C43 PNS 101 C 1 HETATM 21 S S44 PNS . . . F 4 -31.796 39.002 -11.934 1 93.86 ? S44 PNS 101 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #