data_7VRZ # _model_server_result.job_id swkvy8G7aGtVVxOnzBXtGg _model_server_result.datetime_utc '2024-11-14 03:04:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7VRZ # _exptl.entry_id 7VRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Doxofylline _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.07 _cell.angle_gamma 90 _cell.entry_id 7VRZ _cell.length_a 114.665 _cell.length_b 55.822 _cell.length_c 67.765 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,J,K 1 1 C,I,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 -x,y,-z+3 -1 0 0 0 1 0 0 0 -1 -14.428898 0 202.782307 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id 7UH _chem_comp.mon_nstd_flag . _chem_comp.name Doxofylline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-(1,3-dioxolan-2-ylmethyl)-1,3-dimethyl-purine-2,6-dione # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C4 7UH doub 1 n n C5 N1 7UH sing 2 n n C4 N1 7UH sing 3 n n C4 N 7UH sing 4 n n C N 7UH sing 5 n n N1 C3 7UH sing 6 n n N C1 7UH sing 7 n n C3 O 7UH doub 8 n n C3 C2 7UH sing 9 n n C1 C2 7UH doub 10 n y C1 N3 7UH sing 11 n y C2 N2 7UH sing 12 n y N3 C6 7UH doub 13 n y N2 C6 7UH sing 14 n y N2 C7 7UH sing 15 n n C7 C8 7UH sing 16 n n C8 O2 7UH sing 17 n n C8 O3 7UH sing 18 n n O2 C9 7UH sing 19 n n O3 C10 7UH sing 20 n n C9 C10 7UH sing 21 n n C H1 7UH sing 22 n n C H2 7UH sing 23 n n C H3 7UH sing 24 n n C10 H4 7UH sing 25 n n C10 H5 7UH sing 26 n n C5 H6 7UH sing 27 n n C5 H7 7UH sing 28 n n C5 H8 7UH sing 29 n n C6 H9 7UH sing 30 n n C7 H10 7UH sing 31 n n C7 H11 7UH sing 32 n n C8 H12 7UH sing 33 n n C9 H13 7UH sing 34 n n C9 H14 7UH sing 35 n n # _atom_sites.entry_id 7VRZ _atom_sites.fract_transf_matrix[1][1] 0.008721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 7UH A 1 301 301 7UH DOX . E 2 7UH A 1 302 401 7UH DOX . F 3 SO4 A 1 303 2 SO4 SO4 . G 3 SO4 A 1 304 3 SO4 SO4 . H 2 7UH B 1 201 201 7UH DOX . I 2 7UH C 1 201 201 7UH DOX . J 4 HOH A 1 401 123 HOH HOH . J 4 HOH A 2 402 44 HOH HOH . J 4 HOH A 3 403 178 HOH HOH . J 4 HOH A 4 404 100 HOH HOH . J 4 HOH A 5 405 124 HOH HOH . J 4 HOH A 6 406 117 HOH HOH . J 4 HOH A 7 407 205 HOH HOH . J 4 HOH A 8 408 199 HOH HOH . J 4 HOH A 9 409 71 HOH HOH . J 4 HOH A 10 410 223 HOH HOH . J 4 HOH A 11 411 81 HOH HOH . J 4 HOH A 12 412 195 HOH HOH . J 4 HOH A 13 413 69 HOH HOH . J 4 HOH A 14 414 16 HOH HOH . J 4 HOH A 15 415 122 HOH HOH . J 4 HOH A 16 416 120 HOH HOH . J 4 HOH A 17 417 34 HOH HOH . J 4 HOH A 18 418 140 HOH HOH . J 4 HOH A 19 419 149 HOH HOH . J 4 HOH A 20 420 114 HOH HOH . J 4 HOH A 21 421 15 HOH HOH . J 4 HOH A 22 422 222 HOH HOH . J 4 HOH A 23 423 20 HOH HOH . J 4 HOH A 24 424 210 HOH HOH . J 4 HOH A 25 425 145 HOH HOH . J 4 HOH A 26 426 87 HOH HOH . J 4 HOH A 27 427 170 HOH HOH . J 4 HOH A 28 428 7 HOH HOH . J 4 HOH A 29 429 151 HOH HOH . J 4 HOH A 30 430 40 HOH HOH . J 4 HOH A 31 431 5 HOH HOH . J 4 HOH A 32 432 173 HOH HOH . J 4 HOH A 33 433 126 HOH HOH . J 4 HOH A 34 434 39 HOH HOH . J 4 HOH A 35 435 14 HOH HOH . J 4 HOH A 36 436 68 HOH HOH . J 4 HOH A 37 437 82 HOH HOH . J 4 HOH A 38 438 51 HOH HOH . J 4 HOH A 39 439 64 HOH HOH . J 4 HOH A 40 440 35 HOH HOH . J 4 HOH A 41 441 10 HOH HOH . J 4 HOH A 42 442 130 HOH HOH . J 4 HOH A 43 443 110 HOH HOH . J 4 HOH A 44 444 6 HOH HOH . J 4 HOH A 45 445 131 HOH HOH . J 4 HOH A 46 446 139 HOH HOH . J 4 HOH A 47 447 167 HOH HOH . J 4 HOH A 48 448 115 HOH HOH . J 4 HOH A 49 449 79 HOH HOH . J 4 HOH A 50 450 157 HOH HOH . J 4 HOH A 51 451 138 HOH HOH . J 4 HOH A 52 452 201 HOH HOH . J 4 HOH A 53 453 55 HOH HOH . J 4 HOH A 54 454 95 HOH HOH . J 4 HOH A 55 455 85 HOH HOH . J 4 HOH A 56 456 33 HOH HOH . J 4 HOH A 57 457 67 HOH HOH . J 4 HOH A 58 458 200 HOH HOH . J 4 HOH A 59 459 228 HOH HOH . J 4 HOH A 60 460 172 HOH HOH . J 4 HOH A 61 461 155 HOH HOH . J 4 HOH A 62 462 45 HOH HOH . J 4 HOH A 63 463 59 HOH HOH . J 4 HOH A 64 464 165 HOH HOH . J 4 HOH A 65 465 218 HOH HOH . J 4 HOH A 66 466 72 HOH HOH . J 4 HOH A 67 467 62 HOH HOH . J 4 HOH A 68 468 221 HOH HOH . J 4 HOH A 69 469 187 HOH HOH . J 4 HOH A 70 470 42 HOH HOH . J 4 HOH A 71 471 169 HOH HOH . J 4 HOH A 72 472 225 HOH HOH . J 4 HOH A 73 473 224 HOH HOH . J 4 HOH A 74 474 236 HOH HOH . J 4 HOH A 75 475 196 HOH HOH . J 4 HOH A 76 476 198 HOH HOH . J 4 HOH A 77 477 182 HOH HOH . J 4 HOH A 78 478 176 HOH HOH . J 4 HOH A 79 479 194 HOH HOH . J 4 HOH A 80 480 202 HOH HOH . J 4 HOH A 81 481 21 HOH HOH . J 4 HOH A 82 482 204 HOH HOH . J 4 HOH A 83 483 220 HOH HOH . J 4 HOH A 84 484 73 HOH HOH . J 4 HOH A 85 485 133 HOH HOH . J 4 HOH A 86 486 229 HOH HOH . J 4 HOH A 87 487 66 HOH HOH . J 4 HOH A 88 488 152 HOH HOH . J 4 HOH A 89 489 177 HOH HOH . J 4 HOH A 90 490 88 HOH HOH . J 4 HOH A 91 491 185 HOH HOH . J 4 HOH A 92 492 219 HOH HOH . J 4 HOH A 93 493 70 HOH HOH . J 4 HOH A 94 494 108 HOH HOH . J 4 HOH A 95 495 135 HOH HOH . J 4 HOH A 96 496 129 HOH HOH . J 4 HOH A 97 497 186 HOH HOH . J 4 HOH A 98 498 203 HOH HOH . K 4 HOH B 1 301 211 HOH HOH . K 4 HOH B 2 302 212 HOH HOH . K 4 HOH B 3 303 54 HOH HOH . K 4 HOH B 4 304 60 HOH HOH . K 4 HOH B 5 305 30 HOH HOH . K 4 HOH B 6 306 3 HOH HOH . K 4 HOH B 7 307 180 HOH HOH . K 4 HOH B 8 308 89 HOH HOH . K 4 HOH B 9 309 162 HOH HOH . K 4 HOH B 10 310 23 HOH HOH . K 4 HOH B 11 311 8 HOH HOH . K 4 HOH B 12 312 31 HOH HOH . K 4 HOH B 13 313 47 HOH HOH . K 4 HOH B 14 314 74 HOH HOH . K 4 HOH B 15 315 175 HOH HOH . K 4 HOH B 16 316 136 HOH HOH . K 4 HOH B 17 317 190 HOH HOH . K 4 HOH B 18 318 147 HOH HOH . K 4 HOH B 19 319 48 HOH HOH . K 4 HOH B 20 320 235 HOH HOH . K 4 HOH B 21 321 75 HOH HOH . K 4 HOH B 22 322 2 HOH HOH . K 4 HOH B 23 323 22 HOH HOH . K 4 HOH B 24 324 188 HOH HOH . K 4 HOH B 25 325 158 HOH HOH . K 4 HOH B 26 326 57 HOH HOH . K 4 HOH B 27 327 80 HOH HOH . K 4 HOH B 28 328 209 HOH HOH . K 4 HOH B 29 329 125 HOH HOH . K 4 HOH B 30 330 36 HOH HOH . K 4 HOH B 31 331 32 HOH HOH . K 4 HOH B 32 332 168 HOH HOH . K 4 HOH B 33 333 150 HOH HOH . K 4 HOH B 34 334 28 HOH HOH . K 4 HOH B 35 335 19 HOH HOH . K 4 HOH B 36 336 164 HOH HOH . K 4 HOH B 37 337 1 HOH HOH . K 4 HOH B 38 338 104 HOH HOH . K 4 HOH B 39 339 99 HOH HOH . K 4 HOH B 40 340 216 HOH HOH . K 4 HOH B 41 341 91 HOH HOH . K 4 HOH B 42 342 106 HOH HOH . K 4 HOH B 43 343 58 HOH HOH . K 4 HOH B 44 344 101 HOH HOH . K 4 HOH B 45 345 77 HOH HOH . K 4 HOH B 46 346 217 HOH HOH . K 4 HOH B 47 347 156 HOH HOH . K 4 HOH B 48 348 76 HOH HOH . K 4 HOH B 49 349 143 HOH HOH . K 4 HOH B 50 350 193 HOH HOH . K 4 HOH B 51 351 84 HOH HOH . K 4 HOH B 52 352 137 HOH HOH . K 4 HOH B 53 353 61 HOH HOH . K 4 HOH B 54 354 109 HOH HOH . K 4 HOH B 55 355 4 HOH HOH . K 4 HOH B 56 356 192 HOH HOH . K 4 HOH B 57 357 24 HOH HOH . K 4 HOH B 58 358 65 HOH HOH . K 4 HOH B 59 359 181 HOH HOH . K 4 HOH B 60 360 127 HOH HOH . K 4 HOH B 61 361 119 HOH HOH . K 4 HOH B 62 362 96 HOH HOH . K 4 HOH B 63 363 103 HOH HOH . K 4 HOH B 64 364 215 HOH HOH . K 4 HOH B 65 365 234 HOH HOH . K 4 HOH B 66 366 227 HOH HOH . K 4 HOH B 67 367 159 HOH HOH . K 4 HOH B 68 368 197 HOH HOH . K 4 HOH B 69 369 105 HOH HOH . K 4 HOH B 70 370 134 HOH HOH . K 4 HOH B 71 371 208 HOH HOH . K 4 HOH B 72 372 154 HOH HOH . K 4 HOH B 73 373 214 HOH HOH . K 4 HOH B 74 374 113 HOH HOH . K 4 HOH B 75 375 213 HOH HOH . K 4 HOH B 76 376 37 HOH HOH . K 4 HOH B 77 377 107 HOH HOH . K 4 HOH B 78 378 49 HOH HOH . K 4 HOH B 79 379 233 HOH HOH . K 4 HOH B 80 380 112 HOH HOH . K 4 HOH B 81 381 90 HOH HOH . K 4 HOH B 82 382 63 HOH HOH . K 4 HOH B 83 383 102 HOH HOH . K 4 HOH B 84 384 98 HOH HOH . K 4 HOH B 85 385 146 HOH HOH . K 4 HOH B 86 386 132 HOH HOH . K 4 HOH B 87 387 161 HOH HOH . K 4 HOH B 88 388 53 HOH HOH . L 4 HOH C 1 301 83 HOH HOH . L 4 HOH C 2 302 171 HOH HOH . L 4 HOH C 3 303 226 HOH HOH . L 4 HOH C 4 304 121 HOH HOH . L 4 HOH C 5 305 166 HOH HOH . L 4 HOH C 6 306 27 HOH HOH . L 4 HOH C 7 307 153 HOH HOH . L 4 HOH C 8 308 142 HOH HOH . L 4 HOH C 9 309 128 HOH HOH . L 4 HOH C 10 310 92 HOH HOH . L 4 HOH C 11 311 111 HOH HOH . L 4 HOH C 12 312 25 HOH HOH . L 4 HOH C 13 313 12 HOH HOH . L 4 HOH C 14 314 56 HOH HOH . L 4 HOH C 15 315 9 HOH HOH . L 4 HOH C 16 316 13 HOH HOH . L 4 HOH C 17 317 11 HOH HOH . L 4 HOH C 18 318 17 HOH HOH . L 4 HOH C 19 319 18 HOH HOH . L 4 HOH C 20 320 144 HOH HOH . L 4 HOH C 21 321 41 HOH HOH . L 4 HOH C 22 322 94 HOH HOH . L 4 HOH C 23 323 29 HOH HOH . L 4 HOH C 24 324 160 HOH HOH . L 4 HOH C 25 325 26 HOH HOH . L 4 HOH C 26 326 179 HOH HOH . L 4 HOH C 27 327 43 HOH HOH . L 4 HOH C 28 328 174 HOH HOH . L 4 HOH C 29 329 38 HOH HOH . L 4 HOH C 30 330 184 HOH HOH . L 4 HOH C 31 331 163 HOH HOH . L 4 HOH C 32 332 78 HOH HOH . L 4 HOH C 33 333 86 HOH HOH . L 4 HOH C 34 334 52 HOH HOH . L 4 HOH C 35 335 116 HOH HOH . L 4 HOH C 36 336 118 HOH HOH . L 4 HOH C 37 337 183 HOH HOH . L 4 HOH C 38 338 50 HOH HOH . L 4 HOH C 39 339 97 HOH HOH . L 4 HOH C 40 340 93 HOH HOH . L 4 HOH C 41 341 148 HOH HOH . L 4 HOH C 42 342 230 HOH HOH . L 4 HOH C 43 343 191 HOH HOH . L 4 HOH C 44 344 189 HOH HOH . L 4 HOH C 45 345 232 HOH HOH . L 4 HOH C 46 346 206 HOH HOH . L 4 HOH C 47 347 46 HOH HOH . L 4 HOH C 48 348 141 HOH HOH . L 4 HOH C 49 349 207 HOH HOH . L 4 HOH C 50 350 231 HOH HOH . L 4 HOH C 51 351 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7UH . . . D 2 6.643 19.1 57.543 1 58.62 ? C1 7UH 301 A 1 HETATM 2 C C2 7UH . . . D 2 5.658 18.22 57.911 1 59.08 ? C2 7UH 301 A 1 HETATM 3 O O1 7UH . . . D 2 7.979 17.467 54.73 1 56.44 ? O1 7UH 301 A 1 HETATM 4 C C3 7UH . . . D 2 5.407 16.996 57.206 1 60.95 ? C3 7UH 301 A 1 HETATM 5 C C4 7UH . . . D 2 7.275 17.707 55.698 1 59.77 ? C4 7UH 301 A 1 HETATM 6 O O2 7UH . . . D 2 2.994 17.339 61.729 1 63.45 ? O2 7UH 301 A 1 HETATM 7 N N 7UH . . . D 2 7.447 18.868 56.449 1 59.06 ? N 7UH 301 A 1 HETATM 8 C C 7UH . . . D 2 8.477 19.825 56.034 1 54.64 ? C 7UH 301 A 1 HETATM 9 O O 7UH . . . D 2 4.568 16.141 57.486 1 64.64 ? O 7UH 301 A 1 HETATM 10 C C10 7UH . . . D 2 3.406 19.259 62.883 1 53.42 ? C10 7UH 301 A 1 HETATM 11 C C5 7UH . . . D 2 6.094 15.61 55.299 1 54.08 ? C5 7UH 301 A 1 HETATM 12 C C6 7UH . . . D 2 5.705 19.968 59.225 1 59.78 ? C6 7UH 301 A 1 HETATM 13 C C7 7UH . . . D 2 3.876 18.328 59.757 1 61.83 ? C7 7UH 301 A 1 HETATM 14 C C8 7UH . . . D 2 4.175 17.888 61.181 1 58.48 ? C8 7UH 301 A 1 HETATM 15 C C9 7UH . . . D 2 2.314 18.428 62.348 1 60.62 ? C9 7UH 301 A 1 HETATM 16 N N1 7UH . . . D 2 6.268 16.824 56.103 1 54.62 ? N1 7UH 301 A 1 HETATM 17 N N2 7UH . . . D 2 5.042 18.799 59.003 1 60.21 ? N2 7UH 301 A 1 HETATM 18 N N3 7UH . . . D 2 6.682 20.186 58.365 1 57.62 ? N3 7UH 301 A 1 HETATM 19 O O3 7UH . . . D 2 4.51 19.007 62.003 1 59.12 ? O3 7UH 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 19 #