data_7VS0 # _model_server_result.job_id SoAQfnimk_C_uqxZctAOkg _model_server_result.datetime_utc '2024-11-13 05:36:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vs0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7VS0 # _exptl.entry_id 7VS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Doxofylline _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VS0 _cell.length_a 52.496 _cell.length_b 71.782 _cell.length_c 32.124 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id 7UH _chem_comp.mon_nstd_flag . _chem_comp.name Doxofylline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-(1,3-dioxolan-2-ylmethyl)-1,3-dimethyl-purine-2,6-dione # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C4 7UH doub 1 n n C5 N1 7UH sing 2 n n C4 N1 7UH sing 3 n n C4 N 7UH sing 4 n n C N 7UH sing 5 n n N1 C3 7UH sing 6 n n N C1 7UH sing 7 n n C3 O 7UH doub 8 n n C3 C2 7UH sing 9 n n C1 C2 7UH doub 10 n y C1 N3 7UH sing 11 n y C2 N2 7UH sing 12 n y N3 C6 7UH doub 13 n y N2 C6 7UH sing 14 n y N2 C7 7UH sing 15 n n C7 C8 7UH sing 16 n n C8 O2 7UH sing 17 n n C8 O3 7UH sing 18 n n O2 C9 7UH sing 19 n n O3 C10 7UH sing 20 n n C9 C10 7UH sing 21 n n C H1 7UH sing 22 n n C H2 7UH sing 23 n n C H3 7UH sing 24 n n C10 H4 7UH sing 25 n n C10 H5 7UH sing 26 n n C5 H6 7UH sing 27 n n C5 H7 7UH sing 28 n n C5 H8 7UH sing 29 n n C6 H9 7UH sing 30 n n C7 H10 7UH sing 31 n n C7 H11 7UH sing 32 n n C8 H12 7UH sing 33 n n C9 H13 7UH sing 34 n n C9 H14 7UH sing 35 n n # _atom_sites.entry_id 7VS0 _atom_sites.fract_transf_matrix[1][1] 0.019049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7UH A 1 501 501 7UH DOX . C 2 7UH A 1 502 801 7UH DOX . D 3 GOL A 1 503 701 GOL GOL . E 4 HOH A 1 601 155 HOH HOH . E 4 HOH A 2 602 65 HOH HOH . E 4 HOH A 3 603 183 HOH HOH . E 4 HOH A 4 604 133 HOH HOH . E 4 HOH A 5 605 106 HOH HOH . E 4 HOH A 6 606 138 HOH HOH . E 4 HOH A 7 607 81 HOH HOH . E 4 HOH A 8 608 110 HOH HOH . E 4 HOH A 9 609 102 HOH HOH . E 4 HOH A 10 610 82 HOH HOH . E 4 HOH A 11 611 51 HOH HOH . E 4 HOH A 12 612 1 HOH HOH . E 4 HOH A 13 613 118 HOH HOH . E 4 HOH A 14 614 33 HOH HOH . E 4 HOH A 15 615 18 HOH HOH . E 4 HOH A 16 616 100 HOH HOH . E 4 HOH A 17 617 146 HOH HOH . E 4 HOH A 18 618 15 HOH HOH . E 4 HOH A 19 619 50 HOH HOH . E 4 HOH A 20 620 149 HOH HOH . E 4 HOH A 21 621 5 HOH HOH . E 4 HOH A 22 622 58 HOH HOH . E 4 HOH A 23 623 16 HOH HOH . E 4 HOH A 24 624 66 HOH HOH . E 4 HOH A 25 625 137 HOH HOH . E 4 HOH A 26 626 99 HOH HOH . E 4 HOH A 27 627 14 HOH HOH . E 4 HOH A 28 628 123 HOH HOH . E 4 HOH A 29 629 120 HOH HOH . E 4 HOH A 30 630 32 HOH HOH . E 4 HOH A 31 631 186 HOH HOH . E 4 HOH A 32 632 79 HOH HOH . E 4 HOH A 33 633 56 HOH HOH . E 4 HOH A 34 634 136 HOH HOH . E 4 HOH A 35 635 78 HOH HOH . E 4 HOH A 36 636 35 HOH HOH . E 4 HOH A 37 637 64 HOH HOH . E 4 HOH A 38 638 119 HOH HOH . E 4 HOH A 39 639 74 HOH HOH . E 4 HOH A 40 640 148 HOH HOH . E 4 HOH A 41 641 23 HOH HOH . E 4 HOH A 42 642 113 HOH HOH . E 4 HOH A 43 643 10 HOH HOH . E 4 HOH A 44 644 135 HOH HOH . E 4 HOH A 45 645 38 HOH HOH . E 4 HOH A 46 646 95 HOH HOH . E 4 HOH A 47 647 20 HOH HOH . E 4 HOH A 48 648 170 HOH HOH . E 4 HOH A 49 649 19 HOH HOH . E 4 HOH A 50 650 96 HOH HOH . E 4 HOH A 51 651 86 HOH HOH . E 4 HOH A 52 652 11 HOH HOH . E 4 HOH A 53 653 46 HOH HOH . E 4 HOH A 54 654 13 HOH HOH . E 4 HOH A 55 655 3 HOH HOH . E 4 HOH A 56 656 71 HOH HOH . E 4 HOH A 57 657 52 HOH HOH . E 4 HOH A 58 658 12 HOH HOH . E 4 HOH A 59 659 24 HOH HOH . E 4 HOH A 60 660 111 HOH HOH . E 4 HOH A 61 661 87 HOH HOH . E 4 HOH A 62 662 161 HOH HOH . E 4 HOH A 63 663 62 HOH HOH . E 4 HOH A 64 664 42 HOH HOH . E 4 HOH A 65 665 121 HOH HOH . E 4 HOH A 66 666 27 HOH HOH . E 4 HOH A 67 667 134 HOH HOH . E 4 HOH A 68 668 141 HOH HOH . E 4 HOH A 69 669 9 HOH HOH . E 4 HOH A 70 670 157 HOH HOH . E 4 HOH A 71 671 169 HOH HOH . E 4 HOH A 72 672 88 HOH HOH . E 4 HOH A 73 673 17 HOH HOH . E 4 HOH A 74 674 180 HOH HOH . E 4 HOH A 75 675 194 HOH HOH . E 4 HOH A 76 676 6 HOH HOH . E 4 HOH A 77 677 54 HOH HOH . E 4 HOH A 78 678 60 HOH HOH . E 4 HOH A 79 679 7 HOH HOH . E 4 HOH A 80 680 152 HOH HOH . E 4 HOH A 81 681 122 HOH HOH . E 4 HOH A 82 682 31 HOH HOH . E 4 HOH A 83 683 4 HOH HOH . E 4 HOH A 84 684 83 HOH HOH . E 4 HOH A 85 685 181 HOH HOH . E 4 HOH A 86 686 139 HOH HOH . E 4 HOH A 87 687 200 HOH HOH . E 4 HOH A 88 688 80 HOH HOH . E 4 HOH A 89 689 67 HOH HOH . E 4 HOH A 90 690 193 HOH HOH . E 4 HOH A 91 691 112 HOH HOH . E 4 HOH A 92 692 203 HOH HOH . E 4 HOH A 93 693 8 HOH HOH . E 4 HOH A 94 694 104 HOH HOH . E 4 HOH A 95 695 188 HOH HOH . E 4 HOH A 96 696 28 HOH HOH . E 4 HOH A 97 697 69 HOH HOH . E 4 HOH A 98 698 192 HOH HOH . E 4 HOH A 99 699 26 HOH HOH . E 4 HOH A 100 700 59 HOH HOH . E 4 HOH A 101 701 2 HOH HOH . E 4 HOH A 102 702 43 HOH HOH . E 4 HOH A 103 703 98 HOH HOH . E 4 HOH A 104 704 189 HOH HOH . E 4 HOH A 105 705 143 HOH HOH . E 4 HOH A 106 706 124 HOH HOH . E 4 HOH A 107 707 130 HOH HOH . E 4 HOH A 108 708 36 HOH HOH . E 4 HOH A 109 709 162 HOH HOH . E 4 HOH A 110 710 172 HOH HOH . E 4 HOH A 111 711 76 HOH HOH . E 4 HOH A 112 712 177 HOH HOH . E 4 HOH A 113 713 25 HOH HOH . E 4 HOH A 114 714 89 HOH HOH . E 4 HOH A 115 715 84 HOH HOH . E 4 HOH A 116 716 131 HOH HOH . E 4 HOH A 117 717 116 HOH HOH . E 4 HOH A 118 718 44 HOH HOH . E 4 HOH A 119 719 125 HOH HOH . E 4 HOH A 120 720 108 HOH HOH . E 4 HOH A 121 721 168 HOH HOH . E 4 HOH A 122 722 61 HOH HOH . E 4 HOH A 123 723 109 HOH HOH . E 4 HOH A 124 724 199 HOH HOH . E 4 HOH A 125 725 75 HOH HOH . E 4 HOH A 126 726 55 HOH HOH . E 4 HOH A 127 727 97 HOH HOH . E 4 HOH A 128 728 156 HOH HOH . E 4 HOH A 129 729 90 HOH HOH . E 4 HOH A 130 730 128 HOH HOH . E 4 HOH A 131 731 105 HOH HOH . E 4 HOH A 132 732 117 HOH HOH . E 4 HOH A 133 733 147 HOH HOH . E 4 HOH A 134 734 198 HOH HOH . E 4 HOH A 135 735 63 HOH HOH . E 4 HOH A 136 736 191 HOH HOH . E 4 HOH A 137 737 140 HOH HOH . E 4 HOH A 138 738 176 HOH HOH . E 4 HOH A 139 739 145 HOH HOH . E 4 HOH A 140 740 126 HOH HOH . E 4 HOH A 141 741 166 HOH HOH . E 4 HOH A 142 742 40 HOH HOH . E 4 HOH A 143 743 159 HOH HOH . E 4 HOH A 144 744 144 HOH HOH . E 4 HOH A 145 745 91 HOH HOH . E 4 HOH A 146 746 197 HOH HOH . E 4 HOH A 147 747 202 HOH HOH . E 4 HOH A 148 748 185 HOH HOH . E 4 HOH A 149 749 182 HOH HOH . E 4 HOH A 150 750 94 HOH HOH . E 4 HOH A 151 751 93 HOH HOH . E 4 HOH A 152 752 190 HOH HOH . E 4 HOH A 153 753 187 HOH HOH . E 4 HOH A 154 754 174 HOH HOH . E 4 HOH A 155 755 151 HOH HOH . E 4 HOH A 156 756 154 HOH HOH . E 4 HOH A 157 757 37 HOH HOH . E 4 HOH A 158 758 153 HOH HOH . E 4 HOH A 159 759 92 HOH HOH . E 4 HOH A 160 760 127 HOH HOH . E 4 HOH A 161 761 103 HOH HOH . E 4 HOH A 162 762 53 HOH HOH . E 4 HOH A 163 763 73 HOH HOH . E 4 HOH A 164 764 114 HOH HOH . E 4 HOH A 165 765 129 HOH HOH . E 4 HOH A 166 766 41 HOH HOH . E 4 HOH A 167 767 22 HOH HOH . E 4 HOH A 168 768 48 HOH HOH . E 4 HOH A 169 769 160 HOH HOH . E 4 HOH A 170 770 49 HOH HOH . E 4 HOH A 171 771 85 HOH HOH . E 4 HOH A 172 772 195 HOH HOH . E 4 HOH A 173 773 57 HOH HOH . E 4 HOH A 174 774 30 HOH HOH . E 4 HOH A 175 775 68 HOH HOH . E 4 HOH A 176 776 150 HOH HOH . E 4 HOH A 177 777 142 HOH HOH . E 4 HOH A 178 778 163 HOH HOH . E 4 HOH A 179 779 158 HOH HOH . E 4 HOH A 180 780 47 HOH HOH . E 4 HOH A 181 781 173 HOH HOH . E 4 HOH A 182 782 21 HOH HOH . E 4 HOH A 183 783 39 HOH HOH . E 4 HOH A 184 784 101 HOH HOH . E 4 HOH A 185 785 184 HOH HOH . E 4 HOH A 186 786 34 HOH HOH . E 4 HOH A 187 787 70 HOH HOH . E 4 HOH A 188 788 107 HOH HOH . E 4 HOH A 189 789 132 HOH HOH . E 4 HOH A 190 790 165 HOH HOH . E 4 HOH A 191 791 205 HOH HOH . E 4 HOH A 192 792 175 HOH HOH . E 4 HOH A 193 793 201 HOH HOH . E 4 HOH A 194 794 72 HOH HOH . E 4 HOH A 195 795 167 HOH HOH . E 4 HOH A 196 796 29 HOH HOH . E 4 HOH A 197 797 45 HOH HOH . E 4 HOH A 198 798 77 HOH HOH . E 4 HOH A 199 799 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7UH . A . C 2 4.992 4.786 2.918 0.5 27.82 ? C1 7UH 502 A 1 HETATM 2 C C1 7UH . B . C 2 4.245 3.949 3.555 0.5 25.85 ? C1 7UH 502 A 1 HETATM 3 C C2 7UH . A . C 2 4.465 4.505 4.141 0.5 27.86 ? C2 7UH 502 A 1 HETATM 4 C C2 7UH . B . C 2 4.766 5.205 3.633 0.5 25.75 ? C2 7UH 502 A 1 HETATM 5 O O1 7UH . A . C 2 4.073 1.922 1.124 0.5 28.91 ? O1 7UH 502 A 1 HETATM 6 O O1 7UH . B . C 2 5.584 2.864 0.51 0.5 27.11 ? O1 7UH 502 A 1 HETATM 7 C C3 7UH . A . C 2 3.735 3.308 4.414 0.5 28.22 ? C3 7UH 502 A 1 HETATM 8 C C3 7UH . B . C 2 5.616 5.755 2.63 0.5 26.64 ? C3 7UH 502 A 1 HETATM 9 C C4 7UH . A . C 2 4.184 2.722 2.034 0.5 28.44 ? C4 7UH 502 A 1 HETATM 10 C C4 7UH . B . C 2 5.317 3.576 1.46 0.5 26.48 ? C4 7UH 502 A 1 HETATM 11 O O2 7UH . A . C 2 4.16 8.105 6.575 0.5 29.31 ? O2 7UH 502 A 1 HETATM 12 O O2 7UH . B . C 2 3.424 6.582 7.451 0 21.48 ? O2 7UH 502 A 1 HETATM 13 N N 7UH . A . C 2 4.866 3.919 1.863 0.5 28.2 ? N 7UH 502 A 1 HETATM 14 N N 7UH . B . C 2 4.503 3.129 2.489 0.5 26.2 ? N 7UH 502 A 1 HETATM 15 C C 7UH . A . C 2 5.442 4.222 0.55 0.5 28.27 ? C 7UH 502 A 1 HETATM 16 C C 7UH . B . C 2 3.905 1.796 2.39 0.5 26.06 ? C 7UH 502 A 1 HETATM 17 O O 7UH . A . C 2 3.212 2.988 5.476 0.5 28.77 ? O 7UH 502 A 1 HETATM 18 O O 7UH . B . C 2 6.153 6.858 2.639 0.5 27.31 ? O 7UH 502 A 1 HETATM 19 C C10 7UH . A . C 2 3.756 7.654 8.762 0.5 28.5 ? C10 7UH 502 A 1 HETATM 20 C C10 7UH . B . C 2 4.084 8.48 8.545 0 21.19 ? C10 7UH 502 A 1 HETATM 21 C C5 7UH . A . C 2 2.913 1.209 3.453 0.5 28.1 ? C5 7UH 502 A 1 HETATM 22 C C5 7UH . B . C 2 6.614 5.36 0.433 0.5 26.49 ? C5 7UH 502 A 1 HETATM 23 C C6 7UH . A . C 2 5.502 6.426 4.141 0.5 27.85 ? C6 7UH 502 A 1 HETATM 24 C C6 7UH . B . C 2 3.495 4.755 5.35 0.5 25.64 ? C6 7UH 502 A 1 HETATM 25 C C7 7UH . A . C 2 4.553 5.762 6.37 0.5 28.54 ? C7 7UH 502 A 1 HETATM 26 C C7 7UH . B . C 2 4.459 7.075 5.357 0 23.57 ? C7 7UH 502 A 1 HETATM 27 C C8 7UH . A . C 2 3.519 6.838 6.631 0.5 29.02 ? C8 7UH 502 A 1 HETATM 28 C C8 7UH . B . C 2 4.617 7.027 6.864 0 22.08 ? C8 7UH 502 A 1 HETATM 29 C C9 7UH . A . C 2 3.924 8.759 7.82 0.5 28.77 ? C9 7UH 502 A 1 HETATM 30 C C9 7UH . B . C 2 3.441 7.155 8.749 0 21.19 ? C9 7UH 502 A 1 HETATM 31 N N1 7UH . A . C 2 3.645 2.468 3.292 0.5 28.04 ? N1 7UH 502 A 1 HETATM 32 N N1 7UH . B . C 2 5.828 4.868 1.565 0.5 26.51 ? N1 7UH 502 A 1 HETATM 33 N N2 7UH . A . C 2 4.811 5.575 4.94 0.5 28.14 ? N2 7UH 502 A 1 HETATM 34 N N2 7UH . B . C 2 4.265 5.732 4.805 0.5 25.27 ? N2 7UH 502 A 1 HETATM 35 N N3 7UH . A . C 2 5.637 5.985 2.908 0.5 27.98 ? N3 7UH 502 A 1 HETATM 36 N N3 7UH . B . C 2 3.454 3.661 4.623 0.5 26 ? N3 7UH 502 A 1 HETATM 37 O O3 7UH . A . C 2 3.122 6.646 7.981 0.5 28.77 ? O3 7UH 502 A 1 HETATM 38 O O3 7UH . B . C 2 4.785 8.359 7.301 0 21.48 ? O3 7UH 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #