data_7VSF # _model_server_result.job_id 46d3GVirF6rUo-3g89pp1A _model_server_result.datetime_utc '2024-11-22 00:09:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vsf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7VSF # _exptl.entry_id 7VSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.217 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methyl-7-propyl-purine-2,6-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.52 _cell.angle_gamma 90 _cell.entry_id 7VSF _cell.length_a 112.947 _cell.length_b 55.55 _cell.length_c 67.281 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,I,J 1 1 C,H,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -4.130848 0 67.15407 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C9 H12 N4 O2' _chem_comp.formula_weight 208.217 _chem_comp.id 7UM _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-7-propyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 7UM sing 1 n n C1 C2 7UM sing 2 n n C2 N 7UM sing 3 n n O C6 7UM doub 4 n n N C3 7UM sing 5 n y N C5 7UM sing 6 n y C6 C5 7UM sing 7 n n C6 N2 7UM sing 8 n n C3 N1 7UM doub 9 n y C5 C4 7UM doub 10 n y N2 C7 7UM sing 11 n n N1 C4 7UM sing 12 n y C4 N3 7UM sing 13 n n C7 N3 7UM sing 14 n n C7 O1 7UM doub 15 n n N3 C8 7UM sing 16 n n C1 H1 7UM sing 17 n n C1 H2 7UM sing 18 n n C2 H3 7UM sing 19 n n C2 H4 7UM sing 20 n n C3 H5 7UM sing 21 n n C H6 7UM sing 22 n n C H7 7UM sing 23 n n C H8 7UM sing 24 n n C8 H9 7UM sing 25 n n C8 H10 7UM sing 26 n n C8 H11 7UM sing 27 n n N2 H12 7UM sing 28 n n # _atom_sites.entry_id 7VSF _atom_sites.fract_transf_matrix[1][1] 0.008854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000545 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 7UM A 1 201 201 7UM MPX . E 3 EPE A 1 202 301 EPE HPS . F 2 7UM B 1 201 201 7UM MPX . G 4 SO4 B 1 202 1 SO4 SO4 . H 2 7UM C 1 201 201 7UM MPX . I 5 HOH A 1 301 65 HOH HOH . I 5 HOH A 2 302 43 HOH HOH . I 5 HOH A 3 303 61 HOH HOH . I 5 HOH A 4 304 36 HOH HOH . I 5 HOH A 5 305 2 HOH HOH . I 5 HOH A 6 306 11 HOH HOH . I 5 HOH A 7 307 1 HOH HOH . I 5 HOH A 8 308 7 HOH HOH . I 5 HOH A 9 309 20 HOH HOH . I 5 HOH A 10 310 70 HOH HOH . I 5 HOH A 11 311 25 HOH HOH . I 5 HOH A 12 312 34 HOH HOH . I 5 HOH A 13 313 32 HOH HOH . I 5 HOH A 14 314 19 HOH HOH . I 5 HOH A 15 315 69 HOH HOH . I 5 HOH A 16 316 42 HOH HOH . I 5 HOH A 17 317 45 HOH HOH . I 5 HOH A 18 318 29 HOH HOH . I 5 HOH A 19 319 51 HOH HOH . I 5 HOH A 20 320 3 HOH HOH . I 5 HOH A 21 321 40 HOH HOH . I 5 HOH A 22 322 28 HOH HOH . I 5 HOH A 23 323 41 HOH HOH . I 5 HOH A 24 324 44 HOH HOH . I 5 HOH A 25 325 24 HOH HOH . I 5 HOH A 26 326 60 HOH HOH . I 5 HOH A 27 327 17 HOH HOH . I 5 HOH A 28 328 59 HOH HOH . I 5 HOH A 29 329 52 HOH HOH . I 5 HOH A 30 330 67 HOH HOH . I 5 HOH A 31 331 49 HOH HOH . I 5 HOH A 32 332 68 HOH HOH . I 5 HOH A 33 333 74 HOH HOH . I 5 HOH A 34 334 58 HOH HOH . I 5 HOH A 35 335 57 HOH HOH . J 5 HOH B 1 301 18 HOH HOH . J 5 HOH B 2 302 39 HOH HOH . J 5 HOH B 3 303 33 HOH HOH . J 5 HOH B 4 304 13 HOH HOH . J 5 HOH B 5 305 53 HOH HOH . J 5 HOH B 6 306 30 HOH HOH . J 5 HOH B 7 307 15 HOH HOH . J 5 HOH B 8 308 22 HOH HOH . J 5 HOH B 9 309 64 HOH HOH . J 5 HOH B 10 310 9 HOH HOH . J 5 HOH B 11 311 23 HOH HOH . J 5 HOH B 12 312 4 HOH HOH . J 5 HOH B 13 313 10 HOH HOH . J 5 HOH B 14 314 16 HOH HOH . J 5 HOH B 15 315 5 HOH HOH . J 5 HOH B 16 316 37 HOH HOH . J 5 HOH B 17 317 6 HOH HOH . J 5 HOH B 18 318 8 HOH HOH . J 5 HOH B 19 319 21 HOH HOH . J 5 HOH B 20 320 55 HOH HOH . J 5 HOH B 21 321 48 HOH HOH . J 5 HOH B 22 322 38 HOH HOH . J 5 HOH B 23 323 46 HOH HOH . J 5 HOH B 24 324 63 HOH HOH . J 5 HOH B 25 325 66 HOH HOH . J 5 HOH B 26 326 62 HOH HOH . J 5 HOH B 27 327 56 HOH HOH . K 5 HOH C 1 301 71 HOH HOH . K 5 HOH C 2 302 72 HOH HOH . K 5 HOH C 3 303 76 HOH HOH . K 5 HOH C 4 304 31 HOH HOH . K 5 HOH C 5 305 12 HOH HOH . K 5 HOH C 6 306 50 HOH HOH . K 5 HOH C 7 307 14 HOH HOH . K 5 HOH C 8 308 27 HOH HOH . K 5 HOH C 9 309 35 HOH HOH . K 5 HOH C 10 310 47 HOH HOH . K 5 HOH C 11 311 26 HOH HOH . K 5 HOH C 12 312 75 HOH HOH . K 5 HOH C 13 313 73 HOH HOH . K 5 HOH C 14 314 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7UM . . . F 2 43.268 -9.548 0.288 1 45.88 ? C1 7UM 201 B 1 HETATM 2 C C2 7UM . . . F 2 44.193 -8.389 0.642 1 51.68 ? C2 7UM 201 B 1 HETATM 3 C C3 7UM . . . F 2 43.808 -7.173 2.821 1 47.95 ? C3 7UM 201 B 1 HETATM 4 C C4 7UM . . . F 2 42.297 -5.786 2.327 1 44.38 ? C4 7UM 201 B 1 HETATM 5 C C5 7UM . . . F 2 42.561 -6.472 1.166 1 47.68 ? C5 7UM 201 B 1 HETATM 6 C C6 7UM . . . F 2 41.846 -6.226 -0.06 1 45.15 ? C6 7UM 201 B 1 HETATM 7 N N 7UM . . . F 2 43.549 -7.381 1.5 1 53.76 ? N 7UM 201 B 1 HETATM 8 C C 7UM . . . F 2 42.829 -10.324 1.518 1 44.31 ? C 7UM 201 B 1 HETATM 9 O O 7UM . . . F 2 41.985 -6.802 -1.144 1 47.17 ? O 7UM 201 B 1 HETATM 10 C C7 7UM . . . F 2 40.547 -4.562 1.249 1 43.29 ? C7 7UM 201 B 1 HETATM 11 C C8 7UM . . . F 2 40.867 -4.322 3.696 1 43.4 ? C8 7UM 201 B 1 HETATM 12 N N1 7UM . . . F 2 43.074 -6.213 3.355 1 44.13 ? N1 7UM 201 B 1 HETATM 13 N N2 7UM . . . F 2 40.876 -5.247 0.098 1 42.28 ? N2 7UM 201 B 1 HETATM 14 N N3 7UM . . . F 2 41.314 -4.835 2.395 1 48.89 ? N3 7UM 201 B 1 HETATM 15 O O1 7UM . . . F 2 39.569 -3.83 1.295 1 37.53 ? O1 7UM 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #