data_7VSI # _model_server_result.job_id sWM3x5-M7X4EJ1yneHNBcg _model_server_result.datetime_utc '2025-03-28 13:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 7VSI # _exptl.entry_id 7VSI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 450.909 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VSI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 255 1_555 A SG CYS 511 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 345 A CYS 345 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 355 A CYS 355 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 517 A CYS 517 1_555 A SG CYS 522 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A SG CYS 45 A CYS 45 1_555 D C1 PLM . A PLM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale2 A SG CYS 547 A CYS 547 1_555 C C1 PLM . A PLM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? # _chem_comp.formula 'C23 H27 Cl O7' _chem_comp.formula_weight 450.909 _chem_comp.id 7R3 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Empagliflozin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C11 7R3 sing 1 n n O3 C09 7R3 sing 2 n n C11 C09 7R3 sing 3 n n C11 C13 7R3 sing 4 n n C09 C10 7R3 sing 5 n n C13 C15 7R3 sing 6 n n C13 O2 7R3 sing 7 n n C10 O4 7R3 sing 8 n n C10 C12 7R3 sing 9 n n C15 O6 7R3 sing 10 n n O2 C12 7R3 sing 11 n n C12 C14 7R3 sing 12 n n C14 C16 7R3 doub 13 n y C14 C17 7R3 sing 14 n y C16 C18 7R3 sing 15 n y C17 C21 7R3 doub 16 n y C28 C30 7R3 doub 17 n y C28 C26 7R3 sing 18 n y C18 C20 7R3 sing 19 n n C18 C22 7R3 doub 20 n y C20 C26 7R3 sing 21 n n C30 C27 7R3 sing 22 n y C26 C29 7R3 doub 23 n y C23 C25 7R3 sing 24 n n C23 C19 7R3 sing 25 n n C21 C22 7R3 sing 26 n y C22 CL1 7R3 sing 27 n n C25 O7 7R3 sing 28 n n C19 O8 7R3 sing 29 n n C19 C24 7R3 sing 30 n n C27 O8 7R3 sing 31 n n C27 C31 7R3 doub 32 n y C29 C31 7R3 sing 33 n y O7 C24 7R3 sing 34 n n C10 H1 7R3 sing 35 n n C13 H2 7R3 sing 36 n n C15 H3 7R3 sing 37 n n C15 H4 7R3 sing 38 n n C17 H5 7R3 sing 39 n n C20 H6 7R3 sing 40 n n C20 H7 7R3 sing 41 n n C21 H8 7R3 sing 42 n n C24 H9 7R3 sing 43 n n C24 H10 7R3 sing 44 n n C28 H11 7R3 sing 45 n n C09 H12 7R3 sing 46 n n C11 H13 7R3 sing 47 n n C12 H14 7R3 sing 48 n n C16 H15 7R3 sing 49 n n C19 H16 7R3 sing 50 n n C23 H17 7R3 sing 51 n n C23 H18 7R3 sing 52 n n C25 H19 7R3 sing 53 n n C25 H20 7R3 sing 54 n n C29 H21 7R3 sing 55 n n C30 H22 7R3 sing 56 n n C31 H23 7R3 sing 57 n n O3 H24 7R3 sing 58 n n O4 H25 7R3 sing 59 n n O5 H26 7R3 sing 60 n n O6 H27 7R3 sing 61 n n # _atom_sites.entry_id 7VSI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PLM A 1 701 701 PLM PLM . D 3 PLM A 1 702 801 PLM PLM . E 4 7R3 A 1 703 1001 7R3 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7R3 . . . E 4 37.647 47.495 43.278 1 54.54 ? C10 7R3 703 A 1 HETATM 2 C C13 7R3 . . . E 4 40.325 47.665 42.992 1 66.95 ? C13 7R3 703 A 1 HETATM 3 C C15 7R3 . . . E 4 41.474 48.579 43.118 1 65.81 ? C15 7R3 703 A 1 HETATM 4 C C17 7R3 . . . E 4 39.103 46.678 46.756 1 67.49 ? C17 7R3 703 A 1 HETATM 5 C C20 7R3 . . . E 4 35.71 49.539 47.565 1 60.26 ? C20 7R3 703 A 1 HETATM 6 C C21 7R3 . . . E 4 38.829 47.095 48.196 1 62.29 ? C21 7R3 703 A 1 HETATM 7 C C22 7R3 . . . E 4 37.668 48.06 48.441 1 58.69 ? C22 7R3 703 A 1 HETATM 8 C C24 7R3 . . . E 4 40.013 55.51 50.131 1 63.96 ? C24 7R3 703 A 1 HETATM 9 C C26 7R3 . . . E 4 36.16 50.911 48.024 1 44.69 ? C26 7R3 703 A 1 HETATM 10 C C28 7R3 . . . E 4 37.037 51.757 47.153 1 55.36 ? C28 7R3 703 A 1 HETATM 11 C C09 7R3 . . . E 4 38.2 47.284 41.992 1 57.16 ? C09 7R3 703 A 1 HETATM 12 C C11 7R3 . . . E 4 39.393 48.105 41.924 1 56.96 ? C11 7R3 703 A 1 HETATM 13 C C12 7R3 . . . E 4 38.56 46.829 44.217 1 63.02 ? C12 7R3 703 A 1 HETATM 14 C C14 7R3 . . . E 4 38.268 47.106 45.599 1 57.89 ? C14 7R3 703 A 1 HETATM 15 C C16 7R3 . . . E 4 37.217 48.103 45.873 1 52.9 ? C16 7R3 703 A 1 HETATM 16 C C18 7R3 . . . E 4 36.897 48.579 47.302 1 53.37 ? C18 7R3 703 A 1 HETATM 17 C C19 7R3 . . . E 4 39.039 55.107 48.938 1 55.84 ? C19 7R3 703 A 1 HETATM 18 C C23 7R3 . . . E 4 39.075 56.039 48.11 1 56.63 ? C23 7R3 703 A 1 HETATM 19 C C25 7R3 . . . E 4 39.723 57.247 48.964 1 56.39 ? C25 7R3 703 A 1 HETATM 20 C C27 7R3 . . . E 4 37.167 53.651 49.06 1 46.19 ? C27 7R3 703 A 1 HETATM 21 C C29 7R3 . . . E 4 35.811 51.431 49.434 1 47.95 ? C29 7R3 703 A 1 HETATM 22 C C30 7R3 . . . E 4 37.525 53.138 47.668 1 50.15 ? C30 7R3 703 A 1 HETATM 23 C C31 7R3 . . . E 4 36.261 52.828 49.943 1 47.88 ? C31 7R3 703 A 1 HETATM 24 O O2 7R3 . . . E 4 39.625 47.784 44.214 1 80.12 ? O2 7R3 703 A 1 HETATM 25 O O3 7R3 . . . E 4 37.308 47.965 41.11 1 62.72 ? O3 7R3 703 A 1 HETATM 26 O O4 7R3 . . . E 4 36.428 46.778 43.363 1 59.77 ? O4 7R3 703 A 1 HETATM 27 O O5 7R3 . . . E 4 40.076 47.931 40.71 1 50.39 ? O5 7R3 703 A 1 HETATM 28 O O6 7R3 . . . E 4 42.303 47.988 44.106 1 64.1 ? O6 7R3 703 A 1 HETATM 29 O O7 7R3 . . . E 4 39.543 56.908 50.185 1 61.55 ? O7 7R3 703 A 1 HETATM 30 O O8 7R3 . . . E 4 37.659 54.937 49.464 1 54.15 ? O8 7R3 703 A 1 HETATM 31 CL CL1 7R3 . . . E 4 37.304 48.621 50.088 1 97.09 ? CL1 7R3 703 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #