data_7VSO # _model_server_result.job_id vDI_1iVk7baRgmRyWOuzbw _model_server_result.datetime_utc '2024-11-22 19:53:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7VSO # _exptl.entry_id 7VSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VSO _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 103 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 628 n n C1 C6 RET sing 629 n n C1 C16 RET sing 630 n n C1 C17 RET sing 631 n n C2 C3 RET sing 632 n n C2 H21 RET sing 633 n n C2 H22 RET sing 634 n n C3 C4 RET sing 635 n n C3 H31 RET sing 636 n n C3 H32 RET sing 637 n n C4 C5 RET sing 638 n n C4 H41 RET sing 639 n n C4 H42 RET sing 640 n n C5 C6 RET doub 641 n n C5 C18 RET sing 642 n n C6 C7 RET sing 643 n n C7 C8 RET doub 644 e n C7 H7 RET sing 645 n n C8 C9 RET sing 646 n n C8 H8 RET sing 647 n n C9 C10 RET doub 648 e n C9 C19 RET sing 649 n n C10 C11 RET sing 650 n n C10 H10 RET sing 651 n n C11 C12 RET doub 652 e n C11 H11 RET sing 653 n n C12 C13 RET sing 654 n n C12 H12 RET sing 655 n n C13 C14 RET doub 656 e n C13 C20 RET sing 657 n n C14 C15 RET sing 658 n n C14 H14 RET sing 659 n n C15 O1 RET doub 660 n n C15 H15 RET sing 661 n n C16 H161 RET sing 662 n n C16 H162 RET sing 663 n n C16 H163 RET sing 664 n n C17 H171 RET sing 665 n n C17 H172 RET sing 666 n n C17 H173 RET sing 667 n n C18 H181 RET sing 668 n n C18 H182 RET sing 669 n n C18 H183 RET sing 670 n n C19 H191 RET sing 671 n n C19 H192 RET sing 672 n n C19 H193 RET sing 673 n n C20 H201 RET sing 674 n n C20 H202 RET sing 675 n n C20 H203 RET sing 676 n n # _atom_sites.entry_id 7VSO _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 7YH A 1 302 1 7YH UNL . D 4 IOD A 1 303 1 IOD IOD . E 5 CPS A 1 304 10 CPS CPS . F 6 OCT A 1 305 200 OCT OCT . G 7 HP6 A 1 306 254 HP6 HP6 . H 8 D12 A 1 307 256 D12 D12 . I 9 R16 A 1 308 407 R16 R16 . J 10 D10 A 1 309 408 D10 D10 . K 9 R16 A 1 310 411 R16 R16 . L 7 HP6 A 1 311 401 HP6 HP6 . M 10 D10 A 1 312 250 D10 D10 . N 7 HP6 A 1 313 251 HP6 HP6 . O 7 HP6 A 1 314 252 HP6 HP6 . P 11 DD9 A 1 315 253 DD9 DD9 . Q 8 D12 A 1 316 255 D12 D12 . R 8 D12 A 1 317 257 D12 D12 . S 9 R16 A 1 318 259 R16 R16 . T 7 HP6 A 1 319 260 HP6 HP6 . U 6 OCT A 1 320 261 OCT OCT . V 12 HOH A 1 401 533 HOH HOH . V 12 HOH A 2 402 401 HOH HOH . V 12 HOH A 3 403 402 HOH HOH . V 12 HOH A 4 404 400 HOH HOH . V 12 HOH A 5 405 403 HOH HOH . V 12 HOH A 6 406 548 HOH HOH . V 12 HOH A 7 407 419 HOH HOH . V 12 HOH A 8 408 423 HOH HOH . V 12 HOH A 9 409 545 HOH HOH . V 12 HOH A 10 410 549 HOH HOH . V 12 HOH A 11 411 537 HOH HOH . V 12 HOH A 12 412 418 HOH HOH . V 12 HOH A 13 413 532 HOH HOH . V 12 HOH A 14 414 501 HOH HOH . V 12 HOH A 15 415 530 HOH HOH . V 12 HOH A 16 416 527 HOH HOH . V 12 HOH A 17 417 404 HOH HOH . V 12 HOH A 18 418 529 HOH HOH . V 12 HOH A 19 419 531 HOH HOH . V 12 HOH A 20 420 542 HOH HOH . V 12 HOH A 21 421 522 HOH HOH . V 12 HOH A 22 422 526 HOH HOH . V 12 HOH A 23 423 543 HOH HOH . V 12 HOH A 24 424 523 HOH HOH . V 12 HOH A 25 425 546 HOH HOH . V 12 HOH A 26 426 535 HOH HOH . V 12 HOH A 27 427 429 HOH HOH . V 12 HOH A 28 428 528 HOH HOH . V 12 HOH A 29 429 524 HOH HOH . V 12 HOH A 30 430 539 HOH HOH . V 12 HOH A 31 431 540 HOH HOH . V 12 HOH A 32 432 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 26.753 61.875 -2.997 1 77.34 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 27.719 61.48 -4.115 1 68.27 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 28.022 59.992 -4.084 1 66.72 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 28.73 59.578 -2.789 1 65.11 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 28.035 60.168 -1.579 1 70.46 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 27.117 61.184 -1.666 1 73.54 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 26.456 61.582 -0.411 1 66.38 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 25.771 62.678 -0.235 1 64.15 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 25.081 62.961 1.031 1 69.34 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 24.105 63.909 0.954 1 65.94 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 23.286 64.328 2.086 1 69.02 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 22.506 65.359 1.777 1 72.78 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 21.599 66.039 2.745 1 73.3 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 20.936 67.062 2.281 1 71.77 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 20.006 67.834 2.804 1 75.09 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 27.017 63.391 -2.883 1 71.2 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 25.308 61.588 -3.371 1 69.04 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 28.459 59.598 -0.26 1 66.51 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 25.438 62.191 2.28 1 57.56 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 21.554 65.572 4.176 1 60.61 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #