data_7VSO # _model_server_result.job_id 1lhJi6mXYFTIZXvxMJRh2g _model_server_result.datetime_utc '2024-11-13 05:57:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7VSO # _exptl.entry_id 7VSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 777.483 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[(2R)-2-(3-bromanyl-5-iodanyl-phenyl)carbonyloxy-3-tetradecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VSO _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 103 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H49 Br I N O8 P 1' _chem_comp.formula_weight 777.483 _chem_comp.id 7YH _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[(2R)-2-(3-bromanyl-5-iodanyl-phenyl)carbonyloxy-3-tetradecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C39 C38 7YH sing 1 n n C38 C37 7YH sing 2 n n C37 C36 7YH sing 3 n n C36 C35 7YH sing 4 n n C35 C34 7YH sing 5 n n C34 C33 7YH sing 6 n n C33 C32 7YH sing 7 n n C32 C31 7YH sing 8 n n C31 C30 7YH sing 9 n n C30 C29 7YH sing 10 n n C29 C28 7YH sing 11 n n BR1 C4 7YH sing 12 n n C27 C28 7YH sing 13 n n C27 C25 7YH sing 14 n n C3 C4 7YH doub 15 n y C3 C2 7YH sing 16 n y C4 C5 7YH sing 17 n y I1 C2 7YH sing 18 n n C2 C1 7YH doub 19 n y C25 O26 7YH doub 20 n n C25 O24 7YH sing 21 n n C5 C6 7YH doub 22 n y C1 C6 7YH sing 23 n y C6 C7 7YH sing 24 n n O24 C23 7YH sing 25 n n C7 O9 7YH sing 26 n n C7 O8 7YH doub 27 n n O9 C10 7YH sing 28 n n C23 C10 7YH sing 29 n n C10 C11 7YH sing 30 n n C11 O12 7YH sing 31 n n O12 P13 7YH sing 32 n n O14 P13 7YH doub 33 n n P13 O15 7YH sing 34 n n P13 O16 7YH sing 35 n n O16 C17 7YH sing 36 n n C17 C18 7YH sing 37 n n C20 N19 7YH sing 38 n n C18 N19 7YH sing 39 n n N19 C22 7YH sing 40 n n N19 C21 7YH sing 41 n n O15 H1 7YH sing 42 n n C17 H2 7YH sing 43 n n C17 H3 7YH sing 44 n n C18 H4 7YH sing 45 n n C18 H5 7YH sing 46 n n C22 H6 7YH sing 47 n n C22 H7 7YH sing 48 n n C22 H8 7YH sing 49 n n C21 H9 7YH sing 50 n n C21 H10 7YH sing 51 n n C21 H11 7YH sing 52 n n C20 H12 7YH sing 53 n n C20 H13 7YH sing 54 n n C20 H14 7YH sing 55 n n C11 H15 7YH sing 56 n n C11 H16 7YH sing 57 n n C10 H17 7YH sing 58 n n C5 H18 7YH sing 59 n n C3 H19 7YH sing 60 n n C1 H20 7YH sing 61 n n C23 H21 7YH sing 62 n n C23 H22 7YH sing 63 n n C27 H23 7YH sing 64 n n C27 H24 7YH sing 65 n n C28 H25 7YH sing 66 n n C28 H26 7YH sing 67 n n C29 H27 7YH sing 68 n n C29 H28 7YH sing 69 n n C30 H29 7YH sing 70 n n C30 H30 7YH sing 71 n n C31 H31 7YH sing 72 n n C31 H32 7YH sing 73 n n C32 H33 7YH sing 74 n n C32 H34 7YH sing 75 n n C33 H35 7YH sing 76 n n C33 H36 7YH sing 77 n n C34 H37 7YH sing 78 n n C34 H38 7YH sing 79 n n C35 H39 7YH sing 80 n n C35 H40 7YH sing 81 n n C36 H41 7YH sing 82 n n C36 H42 7YH sing 83 n n C37 H43 7YH sing 84 n n C37 H44 7YH sing 85 n n C38 H45 7YH sing 86 n n C38 H46 7YH sing 87 n n C39 H47 7YH sing 88 n n C39 H48 7YH sing 89 n n C39 H49 7YH sing 90 n n # _atom_sites.entry_id 7VSO _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 7YH A 1 302 1 7YH UNL . D 4 IOD A 1 303 1 IOD IOD . E 5 CPS A 1 304 10 CPS CPS . F 6 OCT A 1 305 200 OCT OCT . G 7 HP6 A 1 306 254 HP6 HP6 . H 8 D12 A 1 307 256 D12 D12 . I 9 R16 A 1 308 407 R16 R16 . J 10 D10 A 1 309 408 D10 D10 . K 9 R16 A 1 310 411 R16 R16 . L 7 HP6 A 1 311 401 HP6 HP6 . M 10 D10 A 1 312 250 D10 D10 . N 7 HP6 A 1 313 251 HP6 HP6 . O 7 HP6 A 1 314 252 HP6 HP6 . P 11 DD9 A 1 315 253 DD9 DD9 . Q 8 D12 A 1 316 255 D12 D12 . R 8 D12 A 1 317 257 D12 D12 . S 9 R16 A 1 318 259 R16 R16 . T 7 HP6 A 1 319 260 HP6 HP6 . U 6 OCT A 1 320 261 OCT OCT . V 12 HOH A 1 401 533 HOH HOH . V 12 HOH A 2 402 401 HOH HOH . V 12 HOH A 3 403 402 HOH HOH . V 12 HOH A 4 404 400 HOH HOH . V 12 HOH A 5 405 403 HOH HOH . V 12 HOH A 6 406 548 HOH HOH . V 12 HOH A 7 407 419 HOH HOH . V 12 HOH A 8 408 423 HOH HOH . V 12 HOH A 9 409 545 HOH HOH . V 12 HOH A 10 410 549 HOH HOH . V 12 HOH A 11 411 537 HOH HOH . V 12 HOH A 12 412 418 HOH HOH . V 12 HOH A 13 413 532 HOH HOH . V 12 HOH A 14 414 501 HOH HOH . V 12 HOH A 15 415 530 HOH HOH . V 12 HOH A 16 416 527 HOH HOH . V 12 HOH A 17 417 404 HOH HOH . V 12 HOH A 18 418 529 HOH HOH . V 12 HOH A 19 419 531 HOH HOH . V 12 HOH A 20 420 542 HOH HOH . V 12 HOH A 21 421 522 HOH HOH . V 12 HOH A 22 422 526 HOH HOH . V 12 HOH A 23 423 543 HOH HOH . V 12 HOH A 24 424 523 HOH HOH . V 12 HOH A 25 425 546 HOH HOH . V 12 HOH A 26 426 535 HOH HOH . V 12 HOH A 27 427 429 HOH HOH . V 12 HOH A 28 428 528 HOH HOH . V 12 HOH A 29 429 524 HOH HOH . V 12 HOH A 30 430 539 HOH HOH . V 12 HOH A 31 431 540 HOH HOH . V 12 HOH A 32 432 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O14 7YH . A . C 3 0.208 77.013 15.292 0.3 81.22 ? O14 7YH 302 A 1 HETATM 2 O O14 7YH . B . C 3 0.278 77.122 15.058 0.3 82.9 ? O14 7YH 302 A 1 HETATM 3 P P13 7YH . A . C 3 0.891 75.654 15.426 0.3 98.97 ? P13 7YH 302 A 1 HETATM 4 P P13 7YH . B . C 3 0.892 75.757 15.348 0.3 98.41 ? P13 7YH 302 A 1 HETATM 5 O O15 7YH . A . C 3 2.305 75.697 15.948 0.3 88.8 ? O15 7YH 302 A 1 HETATM 6 O O15 7YH . B . C 3 2.291 75.785 15.911 0.3 89.17 ? O15 7YH 302 A 1 HETATM 7 O O16 7YH . A . C 3 0.046 74.765 16.469 0.3 105.51 ? O16 7YH 302 A 1 HETATM 8 O O16 7YH . B . C 3 -0.034 75.07 16.467 0.3 104.48 ? O16 7YH 302 A 1 HETATM 9 C C17 7YH . A . C 3 -0.329 75.235 17.764 0.3 104.63 ? C17 7YH 302 A 1 HETATM 10 C C17 7YH . B . C 3 -0.718 75.864 17.432 0.3 101.7 ? C17 7YH 302 A 1 HETATM 11 C C18 7YH . A . C 3 -1.634 74.553 18.16 0.3 98.56 ? C18 7YH 302 A 1 HETATM 12 C C18 7YH . B . C 3 -1.909 75.068 17.949 0.3 101.29 ? C18 7YH 302 A 1 HETATM 13 N N19 7YH . A . C 3 -2.45 75.504 18.924 0.25 106.62 ? N19 7YH 302 A 1 HETATM 14 N N19 7YH . B . C 3 -2.631 75.893 18.924 0.3 107.99 ? N19 7YH 302 A 1 HETATM 15 C C22 7YH . A . C 3 -1.56 76.417 19.658 0.25 107.99 ? C22 7YH 302 A 1 HETATM 16 C C22 7YH . B . C 3 -1.666 76.733 19.651 0.25 107.75 ? C22 7YH 302 A 1 HETATM 17 C C21 7YH . A . C 3 -3.269 74.745 19.881 0.25 104.35 ? C21 7YH 302 A 1 HETATM 18 C C21 7YH . B . C 3 -3.315 75.001 19.874 0.3 106.44 ? C21 7YH 302 A 1 HETATM 19 C C20 7YH . A . C 3 -3.313 76.291 18.022 0.3 94.17 ? C20 7YH 302 A 1 HETATM 20 C C20 7YH . B . C 3 -3.598 76.76 18.229 0.3 92.03 ? C20 7YH 302 A 1 HETATM 21 O O12 7YH . A . C 3 0.89 74.877 14.012 0.3 88.78 ? O12 7YH 302 A 1 HETATM 22 O O12 7YH . B . C 3 0.92 74.852 14.016 0.3 85.79 ? O12 7YH 302 A 1 HETATM 23 C C11 7YH . A . C 3 -0.063 73.831 13.875 0.3 91.78 ? C11 7YH 302 A 1 HETATM 24 C C11 7YH . B . C 3 -0.077 73.856 13.835 0.3 85.86 ? C11 7YH 302 A 1 HETATM 25 C C10 7YH . A . C 3 -0.096 73.276 12.468 0.3 94.52 ? C10 7YH 302 A 1 HETATM 26 C C10 7YH . B . C 3 0.205 73.162 12.525 0.3 86.28 ? C10 7YH 302 A 1 HETATM 27 O O9 7YH . A . C 3 1.053 73.788 11.797 0.3 98.56 ? O9 7YH 302 A 1 HETATM 28 O O9 7YH . B . C 3 1.51 73.594 12.159 0.3 87.75 ? O9 7YH 302 A 1 HETATM 29 C C7 7YH . A . C 3 2.012 72.753 11.448 0.3 95.58 ? C7 7YH 302 A 1 HETATM 30 C C7 7YH . B . C 3 2.468 72.541 11.843 0.3 88.78 ? C7 7YH 302 A 1 HETATM 31 O O8 7YH . A . C 3 2.004 71.684 12.027 0.3 106.79 ? O8 7YH 302 A 1 HETATM 32 O O8 7YH . B . C 3 2.579 71.525 12.503 0.3 94.85 ? O8 7YH 302 A 1 HETATM 33 C C6 7YH . A . C 3 3.009 73.057 10.385 0.3 91.15 ? C6 7YH 302 A 1 HETATM 34 C C6 7YH . B . C 3 3.356 72.811 10.688 0.3 85.85 ? C6 7YH 302 A 1 HETATM 35 C C5 7YH . A . C 3 2.705 74.128 9.566 0.3 89.21 ? C5 7YH 302 A 1 HETATM 36 C C5 7YH . B . C 3 4.499 72.067 10.405 0.3 81.61 ? C5 7YH 302 A 1 HETATM 37 C C4 7YH . A . C 3 3.579 74.477 8.56 0.3 88.64 ? C4 7YH 302 A 1 HETATM 38 C C4 7YH . B . C 3 5.26 72.434 9.292 0.3 89.42 ? C4 7YH 302 A 1 HETATM 39 BR BR1 7YH . A . C 3 3.162 75.948 7.472 0.3 106.38 ? BR1 7YH 302 A 1 HETATM 40 BR BR1 7YH . B . C 3 6.848 71.556 8.797 0.3 96.63 ? BR1 7YH 302 A 1 HETATM 41 C C3 7YH . A . C 3 4.754 73.768 8.365 0.3 89.62 ? C3 7YH 302 A 1 HETATM 42 C C3 7YH . B . C 3 4.889 73.503 8.501 0.3 88.07 ? C3 7YH 302 A 1 HETATM 43 C C1 7YH . A . C 3 4.187 72.323 10.212 0.3 84.8 ? C1 7YH 302 A 1 HETATM 44 C C1 7YH . B . C 3 2.978 73.883 9.906 0.3 86.42 ? C1 7YH 302 A 1 HETATM 45 C C2 7YH . A . C 3 5.063 72.689 9.185 0.3 89.39 ? C2 7YH 302 A 1 HETATM 46 C C2 7YH . B . C 3 3.752 74.212 8.819 0.3 87.13 ? C2 7YH 302 A 1 HETATM 47 I I1 7YH . A . C 3 6.873 71.69 8.846 0.3 89.67 ? I1 7YH 302 A 1 HETATM 48 I I1 7YH . B . C 3 3.214 75.821 7.65 0.3 94.15 ? I1 7YH 302 A 1 HETATM 49 C C23 7YH . A . C 3 -1.359 73.89 11.869 0.3 96.26 ? C23 7YH 302 A 1 HETATM 50 C C23 7YH . B . C 3 -0.811 73.706 11.52 0.3 88.7 ? C23 7YH 302 A 1 HETATM 51 O O24 7YH . A . C 3 -1.752 73.306 10.63 0.3 96.31 ? O24 7YH 302 A 1 HETATM 52 O O24 7YH . B . C 3 -0.578 75.085 11.186 0.3 83.65 ? O24 7YH 302 A 1 HETATM 53 C C25 7YH . A . C 3 -2.013 74.209 9.515 0.3 104.42 ? C25 7YH 302 A 1 HETATM 54 C C25 7YH . B . C 3 -1.43 75.667 10.152 0.3 81.43 ? C25 7YH 302 A 1 HETATM 55 O O26 7YH . A . C 3 -1.669 75.384 9.594 0.3 113.97 ? O26 7YH 302 A 1 HETATM 56 O O26 7YH . B . C 3 -1.099 76.675 9.513 0.3 70.44 ? O26 7YH 302 A 1 HETATM 57 C C27 7YH . A . C 3 -2.695 73.701 8.267 0.3 97.35 ? C27 7YH 302 A 1 HETATM 58 C C27 7YH . B . C 3 -2.749 74.964 9.895 0.3 77.33 ? C27 7YH 302 A 1 HETATM 59 C C28 7YH . A . C 3 -3.082 72.244 8.472 0.3 94.94 ? C28 7YH 302 A 1 HETATM 60 C C28 7YH . B . C 3 -2.56 73.46 9.71 0.3 73.29 ? C28 7YH 302 A 1 HETATM 61 C C29 7YH . A . C 3 -3.62 71.66 7.172 0.3 97.39 ? C29 7YH 302 A 1 HETATM 62 C C29 7YH . B . C 3 -2.765 73.07 8.247 0.3 74.23 ? C29 7YH 302 A 1 HETATM 63 C C30 7YH . A . C 3 -5.157 71.709 7.153 0.3 100.37 ? C30 7YH 302 A 1 HETATM 64 C C30 7YH . B . C 3 -1.817 73.831 7.314 0.3 75.33 ? C30 7YH 302 A 1 HETATM 65 C C31 7YH . A . C 3 -5.682 72.582 5.949 0.3 100.24 ? C31 7YH 302 A 1 HETATM 66 C C31 7YH . B . C 3 -1.398 72.958 6.123 0.3 78.3 ? C31 7YH 302 A 1 HETATM 67 C C32 7YH . A . C 3 -7.097 71.922 5.573 0.3 106.16 ? C32 7YH 302 A 1 HETATM 68 C C32 7YH . B . C 3 -1.354 73.752 4.809 0.3 78.4 ? C32 7YH 302 A 1 HETATM 69 C C33 7YH . A . C 3 -7.35 72.033 4.035 0.3 106.97 ? C33 7YH 302 A 1 HETATM 70 C C33 7YH . B . C 3 -0.585 73.03 3.696 0.3 75.6 ? C33 7YH 302 A 1 HETATM 71 C C34 7YH . A . C 3 -7.358 70.549 3.389 0.3 107.86 ? C34 7YH 302 A 1 HETATM 72 C C34 7YH . B . C 3 0.264 73.996 2.868 0.3 77.18 ? C34 7YH 302 A 1 HETATM 73 C C35 7YH . A . C 3 -8.282 70.636 2.12 0.3 107.09 ? C35 7YH 302 A 1 HETATM 74 C C35 7YH . B . C 3 -0.132 73.979 1.395 0.3 80.42 ? C35 7YH 302 A 1 HETATM 75 C C36 7YH . A . C 3 -7.479 71.017 0.862 0.3 112.58 ? C36 7YH 302 A 1 HETATM 76 C C36 7YH . B . C 3 0.809 74.831 0.551 0.3 75.17 ? C36 7YH 302 A 1 HETATM 77 C C37 7YH . A . C 3 -8.366 70.948 -0.395 0.3 112.61 ? C37 7YH 302 A 1 HETATM 78 C C37 7YH . B . C 3 1.746 73.926 -0.25 0.3 74.85 ? C37 7YH 302 A 1 HETATM 79 C C38 7YH . A . C 3 -7.892 72.099 -1.364 0.3 109.58 ? C38 7YH 302 A 1 HETATM 80 C C38 7YH . B . C 3 1.162 73.456 -1.585 0.3 83.42 ? C38 7YH 302 A 1 HETATM 81 C C39 7YH . A . C 3 -9.103 72.541 -2.213 0.3 117.7 ? C39 7YH 302 A 1 HETATM 82 C C39 7YH . B . C 3 0.034 72.435 -1.424 0.3 77.51 ? C39 7YH 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 82 #