data_7VSO # _model_server_result.job_id qyX72cW4CglBJNhLAfuMYA _model_server_result.datetime_utc '2024-11-22 19:43:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 7VSO # _exptl.entry_id 7VSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VSO _cell.length_a 46.2 _cell.length_b 103 _cell.length_c 128.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 103 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 Q N N ? 8 R N N # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 294 n n C1 H11 D12 sing 295 n n C1 H12 D12 sing 296 n n C1 H13 D12 sing 297 n n C2 C3 D12 sing 298 n n C2 H21 D12 sing 299 n n C2 H22 D12 sing 300 n n C3 C4 D12 sing 301 n n C3 H31 D12 sing 302 n n C3 H32 D12 sing 303 n n C4 C5 D12 sing 304 n n C4 H41 D12 sing 305 n n C4 H42 D12 sing 306 n n C5 C6 D12 sing 307 n n C5 H51 D12 sing 308 n n C5 H52 D12 sing 309 n n C6 C7 D12 sing 310 n n C6 H61 D12 sing 311 n n C6 H62 D12 sing 312 n n C7 C8 D12 sing 313 n n C7 H71 D12 sing 314 n n C7 H72 D12 sing 315 n n C8 C9 D12 sing 316 n n C8 H81 D12 sing 317 n n C8 H82 D12 sing 318 n n C9 C10 D12 sing 319 n n C9 H91 D12 sing 320 n n C9 H92 D12 sing 321 n n C10 C11 D12 sing 322 n n C10 H101 D12 sing 323 n n C10 H102 D12 sing 324 n n C11 C12 D12 sing 325 n n C11 H111 D12 sing 326 n n C11 H112 D12 sing 327 n n C12 H121 D12 sing 328 n n C12 H122 D12 sing 329 n n C12 H123 D12 sing 330 n n # _atom_sites.entry_id 7VSO _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 7YH A 1 302 1 7YH UNL . D 4 IOD A 1 303 1 IOD IOD . E 5 CPS A 1 304 10 CPS CPS . F 6 OCT A 1 305 200 OCT OCT . G 7 HP6 A 1 306 254 HP6 HP6 . H 8 D12 A 1 307 256 D12 D12 . I 9 R16 A 1 308 407 R16 R16 . J 10 D10 A 1 309 408 D10 D10 . K 9 R16 A 1 310 411 R16 R16 . L 7 HP6 A 1 311 401 HP6 HP6 . M 10 D10 A 1 312 250 D10 D10 . N 7 HP6 A 1 313 251 HP6 HP6 . O 7 HP6 A 1 314 252 HP6 HP6 . P 11 DD9 A 1 315 253 DD9 DD9 . Q 8 D12 A 1 316 255 D12 D12 . R 8 D12 A 1 317 257 D12 D12 . S 9 R16 A 1 318 259 R16 R16 . T 7 HP6 A 1 319 260 HP6 HP6 . U 6 OCT A 1 320 261 OCT OCT . V 12 HOH A 1 401 533 HOH HOH . V 12 HOH A 2 402 401 HOH HOH . V 12 HOH A 3 403 402 HOH HOH . V 12 HOH A 4 404 400 HOH HOH . V 12 HOH A 5 405 403 HOH HOH . V 12 HOH A 6 406 548 HOH HOH . V 12 HOH A 7 407 419 HOH HOH . V 12 HOH A 8 408 423 HOH HOH . V 12 HOH A 9 409 545 HOH HOH . V 12 HOH A 10 410 549 HOH HOH . V 12 HOH A 11 411 537 HOH HOH . V 12 HOH A 12 412 418 HOH HOH . V 12 HOH A 13 413 532 HOH HOH . V 12 HOH A 14 414 501 HOH HOH . V 12 HOH A 15 415 530 HOH HOH . V 12 HOH A 16 416 527 HOH HOH . V 12 HOH A 17 417 404 HOH HOH . V 12 HOH A 18 418 529 HOH HOH . V 12 HOH A 19 419 531 HOH HOH . V 12 HOH A 20 420 542 HOH HOH . V 12 HOH A 21 421 522 HOH HOH . V 12 HOH A 22 422 526 HOH HOH . V 12 HOH A 23 423 543 HOH HOH . V 12 HOH A 24 424 523 HOH HOH . V 12 HOH A 25 425 546 HOH HOH . V 12 HOH A 26 426 535 HOH HOH . V 12 HOH A 27 427 429 HOH HOH . V 12 HOH A 28 428 528 HOH HOH . V 12 HOH A 29 429 524 HOH HOH . V 12 HOH A 30 430 539 HOH HOH . V 12 HOH A 31 431 540 HOH HOH . V 12 HOH A 32 432 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . H 8 16.813 84.085 15.571 1 106.74 ? C1 D12 307 A 1 HETATM 2 C C2 D12 . . . H 8 16.59 82.579 15.653 1 108.8 ? C2 D12 307 A 1 HETATM 3 C C3 D12 . . . H 8 15.474 82.1 14.707 1 103 ? C3 D12 307 A 1 HETATM 4 C C4 D12 . . . H 8 15.872 81.643 13.321 1 88.54 ? C4 D12 307 A 1 HETATM 5 C C5 D12 . . . H 8 16.931 82.621 12.778 1 117.86 ? C5 D12 307 A 1 HETATM 6 C C6 D12 . . . H 8 16.998 82.752 11.258 1 118.03 ? C6 D12 307 A 1 HETATM 7 C C7 D12 . . . H 8 18.377 82.365 10.702 1 96.65 ? C7 D12 307 A 1 HETATM 8 C C8 D12 . . . H 8 18.469 82.799 9.245 1 104.59 ? C8 D12 307 A 1 HETATM 9 C C9 D12 . . . H 8 17.425 82.12 8.359 1 96.75 ? C9 D12 307 A 1 HETATM 10 C C10 D12 . . . H 8 16.473 83.095 7.649 1 113.46 ? C10 D12 307 A 1 HETATM 11 C C11 D12 . . . H 8 15.985 82.526 6.296 1 112.64 ? C11 D12 307 A 1 HETATM 12 C C12 D12 . . . H 8 14.74 83.169 5.705 1 119.88 ? C12 D12 307 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #