data_7VTC # _model_server_result.job_id MLwUmsPloXq-uW5v5S9vsA _model_server_result.datetime_utc '2024-11-05 21:01:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7VTC # _exptl.entry_id 7VTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VTC _cell.length_a 83.422 _cell.length_b 93.243 _cell.length_c 97.578 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H34 F3 N5 O4' _chem_comp.formula_weight 501.542 _chem_comp.id 4WI _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C8 4WI doub 1 n n C8 N2 4WI sing 2 n n C8 C5 4WI sing 3 n n N2 C7 4WI sing 4 n n C4 C5 4WI sing 5 n n C4 C2 4WI sing 6 n n C5 C6 4WI sing 7 n n N5 C3 4WI doub 8 n n C3 C2 4WI sing 9 n n C7 C6 4WI sing 10 n n C2 N1 4WI sing 11 n n N1 C1 4WI sing 12 n n F1 C22 4WI sing 13 n n O3 C13 4WI doub 14 n n C1 C9 4WI sing 15 n n C1 O2 4WI doub 16 n n F3 C22 4WI sing 17 n n C23 C15 4WI sing 18 n n C22 F2 4WI sing 19 n n C22 C21 4WI sing 20 n n C9 N3 4WI sing 21 n n C9 C12 4WI sing 22 n n C13 N3 4WI sing 23 n n C13 C14 4WI sing 24 n n N4 C21 4WI sing 25 n n N4 C14 4WI sing 26 n n C19 C18 4WI sing 27 n n N3 C10 4WI sing 28 n n C21 O4 4WI doub 29 n n C12 C18 4WI sing 30 n n C12 C11 4WI sing 31 n n C14 C15 4WI sing 32 n n C15 C17 4WI sing 33 n n C15 C16 4WI sing 34 n n C18 C20 4WI sing 35 n n C18 C11 4WI sing 36 n n C10 C11 4WI sing 37 n n C3 H33 4WI sing 38 n n C6 H5 4WI sing 39 n n C6 H6 4WI sing 40 n n C7 H7 4WI sing 41 n n C7 H8 4WI sing 42 n n C10 H11 4WI sing 43 n n C10 H12 4WI sing 44 n n C5 H4 4WI sing 45 n n C9 H10 4WI sing 46 n n C11 H13 4WI sing 47 n n C12 H14 4WI sing 48 n n C19 H23 4WI sing 49 n n C19 H24 4WI sing 50 n n C19 H25 4WI sing 51 n n C20 H26 4WI sing 52 n n C20 H27 4WI sing 53 n n C20 H28 4WI sing 54 n n C16 H17 4WI sing 55 n n C16 H19 4WI sing 56 n n C16 H18 4WI sing 57 n n C17 H20 4WI sing 58 n n C17 H21 4WI sing 59 n n C17 H22 4WI sing 60 n n C23 H29 4WI sing 61 n n C23 H30 4WI sing 62 n n C23 H31 4WI sing 63 n n C4 H2 4WI sing 64 n n C4 H3 4WI sing 65 n n C2 H32 4WI sing 66 n n C14 H15 4WI sing 67 n n N5 H36 4WI sing 68 n n N2 H9 4WI sing 69 n n N1 H1 4WI sing 70 n n N4 H16 4WI sing 71 n n # _atom_sites.entry_id 7VTC _atom_sites.fract_transf_matrix[1][1] 0.011987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4WI A 1 401 3 4WI 9I7 . D 3 HOH A 1 501 23 HOH HOH . D 3 HOH A 2 502 2 HOH HOH . D 3 HOH A 3 503 37 HOH HOH . D 3 HOH A 4 504 10 HOH HOH . D 3 HOH A 5 505 22 HOH HOH . D 3 HOH A 6 506 3 HOH HOH . D 3 HOH A 7 507 20 HOH HOH . D 3 HOH A 8 508 33 HOH HOH . D 3 HOH A 9 509 8 HOH HOH . D 3 HOH A 10 510 39 HOH HOH . D 3 HOH A 11 511 27 HOH HOH . D 3 HOH A 12 512 26 HOH HOH . D 3 HOH A 13 513 4 HOH HOH . D 3 HOH A 14 514 1 HOH HOH . D 3 HOH A 15 515 48 HOH HOH . D 3 HOH A 16 516 31 HOH HOH . D 3 HOH A 17 517 38 HOH HOH . D 3 HOH A 18 518 28 HOH HOH . D 3 HOH A 19 519 25 HOH HOH . E 3 HOH B 1 401 40 HOH HOH . E 3 HOH B 2 402 35 HOH HOH . E 3 HOH B 3 403 6 HOH HOH . E 3 HOH B 4 404 13 HOH HOH . E 3 HOH B 5 405 5 HOH HOH . E 3 HOH B 6 406 30 HOH HOH . E 3 HOH B 7 407 16 HOH HOH . E 3 HOH B 8 408 14 HOH HOH . E 3 HOH B 9 409 15 HOH HOH . E 3 HOH B 10 410 9 HOH HOH . E 3 HOH B 11 411 7 HOH HOH . E 3 HOH B 12 412 29 HOH HOH . E 3 HOH B 13 413 11 HOH HOH . E 3 HOH B 14 414 12 HOH HOH . E 3 HOH B 15 415 17 HOH HOH . E 3 HOH B 16 416 42 HOH HOH . E 3 HOH B 17 417 19 HOH HOH . E 3 HOH B 18 418 32 HOH HOH . E 3 HOH B 19 419 41 HOH HOH . E 3 HOH B 20 420 21 HOH HOH . E 3 HOH B 21 421 24 HOH HOH . E 3 HOH B 22 422 46 HOH HOH . E 3 HOH B 23 423 44 HOH HOH . E 3 HOH B 24 424 34 HOH HOH . E 3 HOH B 25 425 43 HOH HOH . E 3 HOH B 26 426 47 HOH HOH . E 3 HOH B 27 427 36 HOH HOH . E 3 HOH B 28 428 18 HOH HOH . E 3 HOH B 29 429 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4WI . . . C 2 -12.654 10.869 -2.785 1 49.06 ? C8 4WI 401 A 1 HETATM 2 C C3 4WI . . . C 2 -13.612 14.137 0.082 1 49.52 ? C3 4WI 401 A 1 HETATM 3 C C1 4WI . . . C 2 -12.249 11.52 2.155 1 55.12 ? C1 4WI 401 A 1 HETATM 4 C C13 4WI . . . C 2 -13.113 8.553 2.063 1 52.46 ? C13 4WI 401 A 1 HETATM 5 C C21 4WI . . . C 2 -14.465 5.711 3.145 1 62.75 ? C21 4WI 401 A 1 HETATM 6 C C6 4WI . . . C 2 -10.709 10.989 -1.606 1 50.97 ? C6 4WI 401 A 1 HETATM 7 C C7 4WI . . . C 2 -10.66 9.783 -2.513 1 48.88 ? C7 4WI 401 A 1 HETATM 8 C C10 4WI . . . C 2 -12.162 9.109 4.389 1 52.44 ? C10 4WI 401 A 1 HETATM 9 C C5 4WI . . . C 2 -12.201 11.153 -1.476 1 48.8 ? C5 4WI 401 A 1 HETATM 10 C C9 4WI . . . C 2 -13.141 10.8 3.006 1 55.62 ? C9 4WI 401 A 1 HETATM 11 C C11 4WI . . . C 2 -12.567 10.29 5.329 1 53.16 ? C11 4WI 401 A 1 HETATM 12 C C12 4WI . . . C 2 -13.163 11.382 4.448 1 44.83 ? C12 4WI 401 A 1 HETATM 13 C C18 4WI . . . C 2 -14.051 10.685 5.486 1 49.02 ? C18 4WI 401 A 1 HETATM 14 C C19 4WI . . . C 2 -14.466 11.491 6.719 1 48.06 ? C19 4WI 401 A 1 HETATM 15 C C20 4WI . . . C 2 -15.144 9.683 5.092 1 49.67 ? C20 4WI 401 A 1 HETATM 16 C C16 4WI . . . C 2 -11.167 5.259 1.611 1 52.32 ? C16 4WI 401 A 1 HETATM 17 C C17 4WI . . . C 2 -10.353 7.614 1.661 1 57.6 ? C17 4WI 401 A 1 HETATM 18 C C23 4WI . . . C 2 -11.855 6.887 -0.187 1 47.62 ? C23 4WI 401 A 1 HETATM 19 C C4 4WI . . . C 2 -12.439 12.618 -1.244 1 46.85 ? C4 4WI 401 A 1 HETATM 20 C C2 4WI . . . C 2 -12.459 13.134 0.198 1 49.35 ? C2 4WI 401 A 1 HETATM 21 C C14 4WI . . . C 2 -12.711 7.082 2.221 1 58.76 ? C14 4WI 401 A 1 HETATM 22 C C22 4WI . . . C 2 -15.74 4.866 2.955 1 65.23 ? C22 4WI 401 A 1 HETATM 23 C C15 4WI . . . C 2 -11.532 6.712 1.304 1 54.61 ? C15 4WI 401 A 1 HETATM 24 N N5 4WI . . . C 2 -13.926 14.8 1.202 1 47.47 ? N5 4WI 401 A 1 HETATM 25 N N2 4WI . . . C 2 -11.79 10.089 -3.445 1 49.13 ? N2 4WI 401 A 1 HETATM 26 N N3 4WI . . . C 2 -12.803 9.358 3.088 1 51.4 ? N3 4WI 401 A 1 HETATM 27 N N1 4WI . . . C 2 -12.943 12.21 1.232 1 51.02 ? N1 4WI 401 A 1 HETATM 28 N N4 4WI . . . C 2 -13.891 6.222 2.037 1 56.67 ? N4 4WI 401 A 1 HETATM 29 O O1 4WI . . . C 2 -13.696 11.3 -3.287 1 41.12 ? O1 4WI 401 A 1 HETATM 30 O O2 4WI . . . C 2 -11.011 11.454 2.248 1 51.91 ? O2 4WI 401 A 1 HETATM 31 O O3 4WI . . . C 2 -13.699 8.942 1.054 1 51.38 ? O3 4WI 401 A 1 HETATM 32 O O4 4WI . . . C 2 -14.004 5.895 4.279 1 62.38 ? O4 4WI 401 A 1 HETATM 33 F F1 4WI . . . C 2 -16.472 5.312 1.937 1 63.85 ? F1 4WI 401 A 1 HETATM 34 F F2 4WI . . . C 2 -15.408 3.537 2.688 1 71.39 ? F2 4WI 401 A 1 HETATM 35 F F3 4WI . . . C 2 -16.523 4.992 4.101 1 63.42 ? F3 4WI 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #