data_7VTX # _model_server_result.job_id boBf4l9Its6beK24PcxZbQ _model_server_result.datetime_utc '2024-10-20 20:39:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vtx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 7VTX # _exptl.entry_id 7VTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.812 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-9-(3-(2,2-difluoroethoxy)-5-(pyridin-4-yl)benzyl)-9H-purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VTX _cell.length_a 75.936 _cell.length_b 132.005 _cell.length_c 101.592 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 528 1_555 A SG CYS 52 A CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A NE2 HIS 79 A HIS 560 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc2 A NE2 HIS 115 A HIS 596 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc3 A OD2 ASP 116 A ASP 597 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 A OD1 ASP 116 A ASP 597 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc5 A OD1 ASP 245 A ASP 726 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 B ZN ZN . A ZN 901 1_555 E O HOH . A HOH 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 B ZN ZN . A ZN 901 1_555 E O HOH . A HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 C MG MG . A MG 902 1_555 E O HOH . A HOH 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc9 C MG MG . A MG 902 1_555 E O HOH . A HOH 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc10 C MG MG . A MG 902 1_555 E O HOH . A HOH 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 C MG MG . A MG 902 1_555 E O HOH . A HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc12 C MG MG . A MG 902 1_555 E O HOH . A HOH 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? # _chem_comp.formula 'C19 H15 Cl F2 N6 O' _chem_comp.formula_weight 416.812 _chem_comp.id 80D _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-9-(3-(2,2-difluoroethoxy)-5-(pyridin-4-yl)benzyl)-9H-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N27 C28 80D doub 1 n y N27 C26 80D sing 2 n y C28 C29 80D sing 3 n y CL1 C2 80D sing 4 n n C26 C25 80D doub 5 n y C29 C24 80D doub 6 n y C25 C24 80D sing 7 n y C2 N1 80D doub 8 n y C2 N3 80D sing 9 n y C24 C17 80D sing 10 n n N1 C6 80D sing 11 n y N3 C4 80D doub 12 n y C6 N10 80D sing 13 n n C6 C5 80D doub 14 n y C17 C18 80D doub 15 n y C17 C16 80D sing 16 n y C18 C13 80D sing 17 n y C4 C5 80D sing 18 n y C4 N7 80D sing 19 n y C5 N9 80D sing 20 n y C16 C15 80D doub 21 n y C13 C12 80D sing 22 n n C13 C14 80D doub 23 n y N7 C12 80D sing 24 n n N7 C8 80D sing 25 n y N9 C8 80D doub 26 n y C15 C14 80D sing 27 n y C15 O19 80D sing 28 n n O19 C20 80D sing 29 n n C20 C21 80D sing 30 n n F22 C21 80D sing 31 n n F23 C21 80D sing 32 n n C8 H1 80D sing 33 n n N10 H2 80D sing 34 n n N10 H3 80D sing 35 n n C12 H4 80D sing 36 n n C12 H5 80D sing 37 n n C14 H6 80D sing 38 n n C16 H7 80D sing 39 n n C18 H8 80D sing 40 n n C20 H9 80D sing 41 n n C20 H10 80D sing 42 n n C21 H11 80D sing 43 n n C25 H12 80D sing 44 n n C26 H13 80D sing 45 n n C28 H14 80D sing 46 n n C29 H15 80D sing 47 n n # _atom_sites.entry_id 7VTX _atom_sites.fract_transf_matrix[1][1] 0.013169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 901 1 ZN ZN . C 3 MG A 1 902 2 MG MG . D 4 80D A 1 903 1 80D XXX . E 5 HOH A 1 1001 39 HOH HOH . E 5 HOH A 2 1002 22 HOH HOH . E 5 HOH A 3 1003 53 HOH HOH . E 5 HOH A 4 1004 37 HOH HOH . E 5 HOH A 5 1005 3 HOH HOH . E 5 HOH A 6 1006 16 HOH HOH . E 5 HOH A 7 1007 40 HOH HOH . E 5 HOH A 8 1008 8 HOH HOH . E 5 HOH A 9 1009 19 HOH HOH . E 5 HOH A 10 1010 57 HOH HOH . E 5 HOH A 11 1011 30 HOH HOH . E 5 HOH A 12 1012 64 HOH HOH . E 5 HOH A 13 1013 59 HOH HOH . E 5 HOH A 14 1014 31 HOH HOH . E 5 HOH A 15 1015 54 HOH HOH . E 5 HOH A 16 1016 58 HOH HOH . E 5 HOH A 17 1017 43 HOH HOH . E 5 HOH A 18 1018 17 HOH HOH . E 5 HOH A 19 1019 41 HOH HOH . E 5 HOH A 20 1020 38 HOH HOH . E 5 HOH A 21 1021 18 HOH HOH . E 5 HOH A 22 1022 9 HOH HOH . E 5 HOH A 23 1023 29 HOH HOH . E 5 HOH A 24 1024 13 HOH HOH . E 5 HOH A 25 1025 52 HOH HOH . E 5 HOH A 26 1026 1 HOH HOH . E 5 HOH A 27 1027 61 HOH HOH . E 5 HOH A 28 1028 49 HOH HOH . E 5 HOH A 29 1029 55 HOH HOH . E 5 HOH A 30 1030 46 HOH HOH . E 5 HOH A 31 1031 42 HOH HOH . E 5 HOH A 32 1032 50 HOH HOH . E 5 HOH A 33 1033 62 HOH HOH . E 5 HOH A 34 1034 20 HOH HOH . E 5 HOH A 35 1035 12 HOH HOH . E 5 HOH A 36 1036 66 HOH HOH . E 5 HOH A 37 1037 11 HOH HOH . E 5 HOH A 38 1038 5 HOH HOH . E 5 HOH A 39 1039 7 HOH HOH . E 5 HOH A 40 1040 36 HOH HOH . E 5 HOH A 41 1041 28 HOH HOH . E 5 HOH A 42 1042 21 HOH HOH . E 5 HOH A 43 1043 33 HOH HOH . E 5 HOH A 44 1044 63 HOH HOH . E 5 HOH A 45 1045 2 HOH HOH . E 5 HOH A 46 1046 32 HOH HOH . E 5 HOH A 47 1047 6 HOH HOH . E 5 HOH A 48 1048 4 HOH HOH . E 5 HOH A 49 1049 10 HOH HOH . E 5 HOH A 50 1050 23 HOH HOH . E 5 HOH A 51 1051 65 HOH HOH . E 5 HOH A 52 1052 14 HOH HOH . E 5 HOH A 53 1053 26 HOH HOH . E 5 HOH A 54 1054 47 HOH HOH . E 5 HOH A 55 1055 15 HOH HOH . E 5 HOH A 56 1056 34 HOH HOH . E 5 HOH A 57 1057 60 HOH HOH . E 5 HOH A 58 1058 48 HOH HOH . E 5 HOH A 59 1059 25 HOH HOH . E 5 HOH A 60 1060 24 HOH HOH . E 5 HOH A 61 1061 51 HOH HOH . E 5 HOH A 62 1062 44 HOH HOH . E 5 HOH A 63 1063 45 HOH HOH . E 5 HOH A 64 1064 27 HOH HOH . E 5 HOH A 65 1065 67 HOH HOH . E 5 HOH A 66 1066 56 HOH HOH . E 5 HOH A 67 1067 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 80D . . . D 4 -0.687 -22.667 -12.026 1 41.74 ? N1 80D 903 A 1 HETATM 2 C C8 80D . . . D 4 -2.035 -21.202 -8.081 1 42.33 ? C8 80D 903 A 1 HETATM 3 C C5 80D . . . D 4 -1.357 -22.244 -9.796 1 41.78 ? C5 80D 903 A 1 HETATM 4 C C6 80D . . . D 4 -0.894 -23.136 -10.779 1 41.38 ? C6 80D 903 A 1 HETATM 5 N N3 80D . . . D 4 -1.358 -20.437 -11.42 1 42.75 ? N3 80D 903 A 1 HETATM 6 C C4 80D . . . D 4 -1.553 -20.934 -10.191 1 42.59 ? C4 80D 903 A 1 HETATM 7 C C2 80D . . . D 4 -0.93 -21.381 -12.246 1 42.5 ? C2 80D 903 A 1 HETATM 8 N N7 80D . . . D 4 -1.988 -20.268 -9.075 1 43.16 ? N7 80D 903 A 1 HETATM 9 N N9 80D . . . D 4 -1.67 -22.402 -8.455 1 41.76 ? N9 80D 903 A 1 HETATM 10 N N10 80D . . . D 4 -0.623 -24.423 -10.546 1 41.43 ? N10 80D 903 A 1 HETATM 11 CL CL1 80D . . . D 4 -0.631 -20.85 -13.871 1 44.38 ? CL1 80D 903 A 1 HETATM 12 C C12 80D . . . D 4 -2.328 -18.847 -8.975 1 43.76 ? C12 80D 903 A 1 HETATM 13 C C13 80D . . . D 4 -1.14 -17.944 -9.199 1 44.77 ? C13 80D 903 A 1 HETATM 14 C C14 80D . . . D 4 -0.297 -17.612 -8.144 1 46.08 ? C14 80D 903 A 1 HETATM 15 C C15 80D . . . D 4 0.845 -16.858 -8.388 1 48.02 ? C15 80D 903 A 1 HETATM 16 C C16 80D . . . D 4 1.158 -16.429 -9.671 1 46.97 ? C16 80D 903 A 1 HETATM 17 C C17 80D . . . D 4 0.315 -16.745 -10.74 1 46.16 ? C17 80D 903 A 1 HETATM 18 C C18 80D . . . D 4 -0.836 -17.488 -10.476 1 45.58 ? C18 80D 903 A 1 HETATM 19 O O19 80D . . . D 4 1.845 -16.421 -7.55 1 50.9 ? O19 80D 903 A 1 HETATM 20 C C20 80D . . . D 4 1.821 -16.759 -6.153 1 54.48 ? C20 80D 903 A 1 HETATM 21 C C21 80D . . . D 4 1.879 -15.351 -5.476 1 55.68 ? C21 80D 903 A 1 HETATM 22 F F22 80D . . . D 4 2.871 -14.603 -6.031 1 56.41 ? F22 80D 903 A 1 HETATM 23 F F23 80D . . . D 4 0.723 -14.676 -5.719 1 56.36 ? F23 80D 903 A 1 HETATM 24 C C24 80D . . . D 4 0.665 -16.362 -12.134 1 47.85 ? C24 80D 903 A 1 HETATM 25 C C25 80D . . . D 4 1.298 -15.155 -12.419 1 49.24 ? C25 80D 903 A 1 HETATM 26 C C26 80D . . . D 4 1.618 -14.849 -13.729 1 48.85 ? C26 80D 903 A 1 HETATM 27 N N27 80D . . . D 4 1.352 -15.653 -14.764 1 49.79 ? N27 80D 903 A 1 HETATM 28 C C28 80D . . . D 4 0.744 -16.812 -14.487 1 48.9 ? C28 80D 903 A 1 HETATM 29 C C29 80D . . . D 4 0.389 -17.205 -13.209 1 47.93 ? C29 80D 903 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #