data_7VU3 # _model_server_result.job_id 0qqFOEDODnbesziYuEzj8A _model_server_result.datetime_utc '2024-10-19 10:35:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7VU3 # _exptl.entry_id 7VU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VU3 _cell.length_a 73.24 _cell.length_b 73.24 _cell.length_c 213.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 2 5 4 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 2 6 5 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 U 1 NAG U 1 NAG 2 n B NAG 2 U 2 NAG U 2 NAG 2 n B NAG 3 U 3 NAG U 3 NAG 2 n B NAG 4 U 4 NAG U 4 NAG 2 n B NAG 5 U 5 NAG U 5 NAG 2 n B NAG 6 U 6 NAG U 6 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 NAG . U NAG 1 1_555 B C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 B O4 NAG . U NAG 2 1_555 B C1 NAG . U NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B O4 NAG . U NAG 3 1_555 B C1 NAG . U NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 B O4 NAG . U NAG 4 1_555 B C1 NAG . U NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale5 B O4 NAG . U NAG 5 1_555 B C1 NAG . U NAG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OD1 ASP 402 A ASP 402 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 A O ASN 403 A ASN 403 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A OD1 ASP 420 A ASP 420 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc4 A OD2 ASP 420 A ASP 420 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 H CA CA . A CA 506 1_555 I O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 7VU3 _atom_sites.fract_transf_matrix[1][1] 0.013654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 C8E A 1 501 501 C8E C8E . D 3 C8E A 1 502 601 C8E C8E . E 3 C8E A 1 503 701 C8E C8E . F 3 C8E A 1 504 801 C8E C8E . G 3 C8E A 1 505 901 C8E C8E . H 4 CA A 1 506 1 CA CA . I 5 HOH A 1 601 83 HOH HOH . I 5 HOH A 2 602 41 HOH HOH . I 5 HOH A 3 603 37 HOH HOH . I 5 HOH A 4 604 40 HOH HOH . I 5 HOH A 5 605 10 HOH HOH . I 5 HOH A 6 606 46 HOH HOH . I 5 HOH A 7 607 84 HOH HOH . I 5 HOH A 8 608 27 HOH HOH . I 5 HOH A 9 609 85 HOH HOH . I 5 HOH A 10 610 48 HOH HOH . I 5 HOH A 11 611 29 HOH HOH . I 5 HOH A 12 612 22 HOH HOH . I 5 HOH A 13 613 81 HOH HOH . I 5 HOH A 14 614 49 HOH HOH . I 5 HOH A 15 615 87 HOH HOH . I 5 HOH A 16 616 52 HOH HOH . I 5 HOH A 17 617 86 HOH HOH . I 5 HOH A 18 618 75 HOH HOH . I 5 HOH A 19 619 79 HOH HOH . I 5 HOH A 20 620 21 HOH HOH . I 5 HOH A 21 621 36 HOH HOH . I 5 HOH A 22 622 12 HOH HOH . I 5 HOH A 23 623 45 HOH HOH . I 5 HOH A 24 624 26 HOH HOH . I 5 HOH A 25 625 88 HOH HOH . I 5 HOH A 26 626 44 HOH HOH . I 5 HOH A 27 627 61 HOH HOH . I 5 HOH A 28 628 15 HOH HOH . I 5 HOH A 29 629 42 HOH HOH . I 5 HOH A 30 630 69 HOH HOH . I 5 HOH A 31 631 2 HOH HOH . I 5 HOH A 32 632 65 HOH HOH . I 5 HOH A 33 633 33 HOH HOH . I 5 HOH A 34 634 34 HOH HOH . I 5 HOH A 35 635 6 HOH HOH . I 5 HOH A 36 636 78 HOH HOH . I 5 HOH A 37 637 28 HOH HOH . I 5 HOH A 38 638 24 HOH HOH . I 5 HOH A 39 639 4 HOH HOH . I 5 HOH A 40 640 20 HOH HOH . I 5 HOH A 41 641 70 HOH HOH . I 5 HOH A 42 642 9 HOH HOH . I 5 HOH A 43 643 53 HOH HOH . I 5 HOH A 44 644 32 HOH HOH . I 5 HOH A 45 645 58 HOH HOH . I 5 HOH A 46 646 1 HOH HOH . I 5 HOH A 47 647 66 HOH HOH . I 5 HOH A 48 648 50 HOH HOH . I 5 HOH A 49 649 8 HOH HOH . I 5 HOH A 50 650 3 HOH HOH . I 5 HOH A 51 651 5 HOH HOH . I 5 HOH A 52 652 56 HOH HOH . I 5 HOH A 53 653 7 HOH HOH . I 5 HOH A 54 654 39 HOH HOH . I 5 HOH A 55 655 80 HOH HOH . I 5 HOH A 56 656 47 HOH HOH . I 5 HOH A 57 657 17 HOH HOH . I 5 HOH A 58 658 16 HOH HOH . I 5 HOH A 59 659 19 HOH HOH . I 5 HOH A 60 660 89 HOH HOH . I 5 HOH A 61 661 76 HOH HOH . I 5 HOH A 62 662 60 HOH HOH . I 5 HOH A 63 663 31 HOH HOH . I 5 HOH A 64 664 14 HOH HOH . I 5 HOH A 65 665 82 HOH HOH . I 5 HOH A 66 666 23 HOH HOH . I 5 HOH A 67 667 13 HOH HOH . I 5 HOH A 68 668 63 HOH HOH . I 5 HOH A 69 669 43 HOH HOH . I 5 HOH A 70 670 71 HOH HOH . I 5 HOH A 71 671 68 HOH HOH . I 5 HOH A 72 672 18 HOH HOH . I 5 HOH A 73 673 25 HOH HOH . I 5 HOH A 74 674 30 HOH HOH . I 5 HOH A 75 675 62 HOH HOH . I 5 HOH A 76 676 35 HOH HOH . I 5 HOH A 77 677 11 HOH HOH . I 5 HOH A 78 678 38 HOH HOH . I 5 HOH A 79 679 64 HOH HOH . I 5 HOH A 80 680 55 HOH HOH . I 5 HOH A 81 681 73 HOH HOH . I 5 HOH A 82 682 77 HOH HOH . I 5 HOH A 83 683 51 HOH HOH . I 5 HOH A 84 684 54 HOH HOH . I 5 HOH A 85 685 67 HOH HOH . I 5 HOH A 86 686 72 HOH HOH . I 5 HOH A 87 687 74 HOH HOH . I 5 HOH A 88 688 59 HOH HOH . I 5 HOH A 89 689 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 C8E . . . C 3 -6.078 -6.945 4.88 1 53.82 ? O12 C8E 501 A 1 HETATM 2 C C13 C8E . . . C 3 -7.296 -6.862 5.582 1 54.24 ? C13 C8E 501 A 1 HETATM 3 C C14 C8E . . . C 3 -7.166 -7.542 6.941 1 55.97 ? C14 C8E 501 A 1 HETATM 4 O O15 C8E . . . C 3 -7.172 -6.583 7.978 1 56.66 ? O15 C8E 501 A 1 HETATM 5 C C16 C8E . . . C 3 -6.975 -7.171 9.248 1 56.78 ? C16 C8E 501 A 1 HETATM 6 C C17 C8E . . . C 3 -5.96 -6.361 10.052 1 57.35 ? C17 C8E 501 A 1 HETATM 7 O O18 C8E . . . C 3 -6.614 -5.4 10.86 1 56.54 ? O18 C8E 501 A 1 HETATM 8 C C19 C8E . . . C 3 -6.558 -5.621 12.258 1 53.9 ? C19 C8E 501 A 1 HETATM 9 C C20 C8E . . . C 3 -6.173 -4.31 12.931 1 51.38 ? C20 C8E 501 A 1 HETATM 10 O O21 C8E . . . C 3 -5.481 -4.575 14.128 1 50.76 ? O21 C8E 501 A 1 HETATM 11 H H131 C8E . . . C 3 -8.086 -7.343 5.005 1 65.25 ? H131 C8E 501 A 1 HETATM 12 H H132 C8E . . . C 3 -7.571 -5.816 5.719 1 65.25 ? H132 C8E 501 A 1 HETATM 13 H H141 C8E . . . C 3 -6.238 -8.113 6.977 1 67.32 ? H141 C8E 501 A 1 HETATM 14 H H142 C8E . . . C 3 -7.993 -8.238 7.082 1 67.32 ? H142 C8E 501 A 1 HETATM 15 H H161 C8E . . . C 3 -6.617 -8.193 9.128 1 68.29 ? H161 C8E 501 A 1 HETATM 16 H H162 C8E . . . C 3 -7.923 -7.209 9.786 1 68.29 ? H162 C8E 501 A 1 HETATM 17 H H171 C8E . . . C 3 -5.274 -5.858 9.371 1 68.98 ? H171 C8E 501 A 1 HETATM 18 H H172 C8E . . . C 3 -5.376 -7.031 10.682 1 68.98 ? H172 C8E 501 A 1 HETATM 19 H H191 C8E . . . C 3 -5.823 -6.392 12.488 1 64.84 ? H191 C8E 501 A 1 HETATM 20 H H192 C8E . . . C 3 -7.527 -5.961 12.624 1 64.84 ? H192 C8E 501 A 1 HETATM 21 H H201 C8E . . . C 3 -7.069 -3.727 13.144 1 61.82 ? H201 C8E 501 A 1 HETATM 22 H H202 C8E . . . C 3 -5.542 -3.723 12.263 1 61.82 ? H202 C8E 501 A 1 HETATM 23 H HO2 C8E . . . C 3 -5.241 -3.725 14.554 1 61.06 ? HO2 C8E 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #