data_7VU3 # _model_server_result.job_id ktBp2_fbJbL3t1XMkDiOKg _model_server_result.datetime_utc '2024-10-19 10:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 7VU3 # _exptl.entry_id 7VU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VU3 _cell.length_a 73.24 _cell.length_b 73.24 _cell.length_c 213.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 2 5 4 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 2 6 5 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 U 1 NAG U 1 NAG 2 n B NAG 2 U 2 NAG U 2 NAG 2 n B NAG 3 U 3 NAG U 3 NAG 2 n B NAG 4 U 4 NAG U 4 NAG 2 n B NAG 5 U 5 NAG U 5 NAG 2 n B NAG 6 U 6 NAG U 6 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 NAG . U NAG 1 1_555 B C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 B O4 NAG . U NAG 2 1_555 B C1 NAG . U NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B O4 NAG . U NAG 3 1_555 B C1 NAG . U NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 B O4 NAG . U NAG 4 1_555 B C1 NAG . U NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale5 B O4 NAG . U NAG 5 1_555 B C1 NAG . U NAG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OD1 ASP 402 A ASP 402 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 A O ASN 403 A ASN 403 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A OD1 ASP 420 A ASP 420 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc4 A OD2 ASP 420 A ASP 420 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 H CA CA . A CA 506 1_555 I O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VU3 _atom_sites.fract_transf_matrix[1][1] 0.013654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 C8E A 1 501 501 C8E C8E . D 3 C8E A 1 502 601 C8E C8E . E 3 C8E A 1 503 701 C8E C8E . F 3 C8E A 1 504 801 C8E C8E . G 3 C8E A 1 505 901 C8E C8E . H 4 CA A 1 506 1 CA CA . I 5 HOH A 1 601 83 HOH HOH . I 5 HOH A 2 602 41 HOH HOH . I 5 HOH A 3 603 37 HOH HOH . I 5 HOH A 4 604 40 HOH HOH . I 5 HOH A 5 605 10 HOH HOH . I 5 HOH A 6 606 46 HOH HOH . I 5 HOH A 7 607 84 HOH HOH . I 5 HOH A 8 608 27 HOH HOH . I 5 HOH A 9 609 85 HOH HOH . I 5 HOH A 10 610 48 HOH HOH . I 5 HOH A 11 611 29 HOH HOH . I 5 HOH A 12 612 22 HOH HOH . I 5 HOH A 13 613 81 HOH HOH . I 5 HOH A 14 614 49 HOH HOH . I 5 HOH A 15 615 87 HOH HOH . I 5 HOH A 16 616 52 HOH HOH . I 5 HOH A 17 617 86 HOH HOH . I 5 HOH A 18 618 75 HOH HOH . I 5 HOH A 19 619 79 HOH HOH . I 5 HOH A 20 620 21 HOH HOH . I 5 HOH A 21 621 36 HOH HOH . I 5 HOH A 22 622 12 HOH HOH . I 5 HOH A 23 623 45 HOH HOH . I 5 HOH A 24 624 26 HOH HOH . I 5 HOH A 25 625 88 HOH HOH . I 5 HOH A 26 626 44 HOH HOH . I 5 HOH A 27 627 61 HOH HOH . I 5 HOH A 28 628 15 HOH HOH . I 5 HOH A 29 629 42 HOH HOH . I 5 HOH A 30 630 69 HOH HOH . I 5 HOH A 31 631 2 HOH HOH . I 5 HOH A 32 632 65 HOH HOH . I 5 HOH A 33 633 33 HOH HOH . I 5 HOH A 34 634 34 HOH HOH . I 5 HOH A 35 635 6 HOH HOH . I 5 HOH A 36 636 78 HOH HOH . I 5 HOH A 37 637 28 HOH HOH . I 5 HOH A 38 638 24 HOH HOH . I 5 HOH A 39 639 4 HOH HOH . I 5 HOH A 40 640 20 HOH HOH . I 5 HOH A 41 641 70 HOH HOH . I 5 HOH A 42 642 9 HOH HOH . I 5 HOH A 43 643 53 HOH HOH . I 5 HOH A 44 644 32 HOH HOH . I 5 HOH A 45 645 58 HOH HOH . I 5 HOH A 46 646 1 HOH HOH . I 5 HOH A 47 647 66 HOH HOH . I 5 HOH A 48 648 50 HOH HOH . I 5 HOH A 49 649 8 HOH HOH . I 5 HOH A 50 650 3 HOH HOH . I 5 HOH A 51 651 5 HOH HOH . I 5 HOH A 52 652 56 HOH HOH . I 5 HOH A 53 653 7 HOH HOH . I 5 HOH A 54 654 39 HOH HOH . I 5 HOH A 55 655 80 HOH HOH . I 5 HOH A 56 656 47 HOH HOH . I 5 HOH A 57 657 17 HOH HOH . I 5 HOH A 58 658 16 HOH HOH . I 5 HOH A 59 659 19 HOH HOH . I 5 HOH A 60 660 89 HOH HOH . I 5 HOH A 61 661 76 HOH HOH . I 5 HOH A 62 662 60 HOH HOH . I 5 HOH A 63 663 31 HOH HOH . I 5 HOH A 64 664 14 HOH HOH . I 5 HOH A 65 665 82 HOH HOH . I 5 HOH A 66 666 23 HOH HOH . I 5 HOH A 67 667 13 HOH HOH . I 5 HOH A 68 668 63 HOH HOH . I 5 HOH A 69 669 43 HOH HOH . I 5 HOH A 70 670 71 HOH HOH . I 5 HOH A 71 671 68 HOH HOH . I 5 HOH A 72 672 18 HOH HOH . I 5 HOH A 73 673 25 HOH HOH . I 5 HOH A 74 674 30 HOH HOH . I 5 HOH A 75 675 62 HOH HOH . I 5 HOH A 76 676 35 HOH HOH . I 5 HOH A 77 677 11 HOH HOH . I 5 HOH A 78 678 38 HOH HOH . I 5 HOH A 79 679 64 HOH HOH . I 5 HOH A 80 680 55 HOH HOH . I 5 HOH A 81 681 73 HOH HOH . I 5 HOH A 82 682 77 HOH HOH . I 5 HOH A 83 683 51 HOH HOH . I 5 HOH A 84 684 54 HOH HOH . I 5 HOH A 85 685 67 HOH HOH . I 5 HOH A 86 686 72 HOH HOH . I 5 HOH A 87 687 74 HOH HOH . I 5 HOH A 88 688 59 HOH HOH . I 5 HOH A 89 689 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -28.797 _atom_site.Cartn_y 25.367 _atom_site.Cartn_z -23.573 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 506 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #