data_7VU9
#
_model_server_result.job_id            vE8KV8o3gif39N3auvmpIw 
_model_server_result.datetime_utc      '2024-10-18 17:23:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vu9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":201}' 
#
_entry.id    7VU9 
#
_exptl.entry_id    7VU9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VU9 
_cell.length_a            126.739 
_cell.length_b            127.057 
_cell.length_c            39.418 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VU9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        21 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,M,N,O,S,T,U 1 1 
D,E,F,J,K,L,P,Q,R,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n G NAG 1 G 1 NAG AaA 101 NAG 
2 n G NAG 2 G 2 NAG AbA 102 NAG 
2 n G FUC 3 G 3 FUC AcA 103 FUC 
2 n H NAG 1 H 1 NAG BaB 101 NAG 
2 n H NAG 2 H 2 NAG BbB 102 NAG 
2 n H FUC 3 H 3 FUC BcB 103 FUC 
2 n I NAG 1 I 1 NAG CaC 101 NAG 
2 n I NAG 2 I 2 NAG CbC 102 NAG 
2 n I FUC 3 I 3 FUC CcC 103 FUC 
2 n J NAG 1 J 1 NAG DaD 101 NAG 
2 n J NAG 2 J 2 NAG DbD 102 NAG 
2 n J FUC 3 J 3 FUC DcD 103 FUC 
2 n K NAG 1 K 1 NAG EaE 101 NAG 
2 n K NAG 2 K 2 NAG EbE 102 NAG 
2 n K FUC 3 K 3 FUC EcE 103 FUC 
2 n L NAG 1 L 1 NAG FaF 101 NAG 
2 n L NAG 2 L 2 NAG FbF 102 NAG 
2 n L FUC 3 L 3 FUC FcF 103 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 17 A CYS 17 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 B SG CYS 10 B CYS 10 1_555 B SG CYS 17 B CYS 17 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf3 C SG CYS 10 C CYS 10 1_555 C SG CYS 17 C CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
disulf ? disulf4 D SG CYS 10 D CYS 10 1_555 D SG CYS 17 D CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? 
disulf ? disulf5 F SG CYS 10 F CYS 10 1_555 F SG CYS 17 F CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
covale ? covale1 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? 
covale ? covale2 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale4 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale5 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale6 I O6 NAG . I NAG 1 1_555 I C1 FUC . I FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? 
covale ? covale8 J O6 NAG . J NAG 1 1_555 J C1 FUC . J FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale9 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale10 K O6 NAG . K NAG 1 1_555 K C1 FUC . K FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale11 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale12 L O6 NAG . L NAG 1 1_555 L C1 FUC . L FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 41 n n 
C O2 FMT sing 42 n n 
C H FMT sing 43 n n 
O2 HO2 FMT sing 44 n n 
#
_atom_sites.entry_id                     7VU9 
_atom_sites.fract_transf_matrix[1][1]    0.00789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00787 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 FMT A 1 201 201 FMT FMT . 
N 3 FMT B 1 201 201 FMT FMT . 
O 3 FMT C 1 201 201 FMT FMT . 
P 3 FMT D 1 201 201 FMT FMT . 
Q 3 FMT E 1 201 201 FMT FMT . 
R 3 FMT F 1 201 201 FMT FMT . 
S 4 HOH A 1 301 9 HOH HOH . 
S 4 HOH A 2 302 48 HOH HOH . 
S 4 HOH A 3 303 46 HOH HOH . 
S 4 HOH A 4 304 39 HOH HOH . 
S 4 HOH A 5 305 107 HOH HOH . 
S 4 HOH A 6 306 26 HOH HOH . 
S 4 HOH A 7 307 1 HOH HOH . 
S 4 HOH A 8 308 13 HOH HOH . 
S 4 HOH A 9 309 56 HOH HOH . 
S 4 HOH A 10 310 33 HOH HOH . 
S 4 HOH A 11 311 1 HOH HOH . 
S 4 HOH A 12 312 77 HOH HOH . 
S 4 HOH A 13 313 97 HOH HOH . 
S 4 HOH A 14 314 11 HOH HOH . 
S 4 HOH A 15 315 51 HOH HOH . 
S 4 HOH A 16 316 11 HOH HOH . 
S 4 HOH A 17 317 85 HOH HOH . 
S 4 HOH A 18 318 42 HOH HOH . 
S 4 HOH A 19 319 18 HOH HOH . 
S 4 HOH A 20 320 21 HOH HOH . 
S 4 HOH A 21 321 8 HOH HOH . 
S 4 HOH A 22 322 38 HOH HOH . 
S 4 HOH A 23 323 40 HOH HOH . 
S 4 HOH A 24 324 25 HOH HOH . 
S 4 HOH A 25 325 82 HOH HOH . 
S 4 HOH A 26 326 44 HOH HOH . 
T 4 HOH B 1 301 132 HOH HOH . 
T 4 HOH B 2 302 144 HOH HOH . 
T 4 HOH B 3 303 30 HOH HOH . 
T 4 HOH B 4 304 109 HOH HOH . 
T 4 HOH B 5 305 6 HOH HOH . 
T 4 HOH B 6 306 105 HOH HOH . 
T 4 HOH B 7 307 43 HOH HOH . 
T 4 HOH B 8 308 24 HOH HOH . 
T 4 HOH B 9 309 16 HOH HOH . 
T 4 HOH B 10 310 90 HOH HOH . 
T 4 HOH B 11 311 89 HOH HOH . 
T 4 HOH B 12 312 54 HOH HOH . 
T 4 HOH B 13 313 32 HOH HOH . 
T 4 HOH B 14 314 73 HOH HOH . 
T 4 HOH B 15 315 65 HOH HOH . 
T 4 HOH B 16 316 30 HOH HOH . 
T 4 HOH B 17 317 9 HOH HOH . 
T 4 HOH B 18 318 13 HOH HOH . 
T 4 HOH B 19 319 74 HOH HOH . 
T 4 HOH B 20 320 67 HOH HOH . 
T 4 HOH B 21 321 68 HOH HOH . 
T 4 HOH B 22 322 71 HOH HOH . 
T 4 HOH B 23 323 131 HOH HOH . 
T 4 HOH B 24 324 69 HOH HOH . 
T 4 HOH B 25 325 140 HOH HOH . 
T 4 HOH B 26 326 53 HOH HOH . 
T 4 HOH B 27 327 80 HOH HOH . 
T 4 HOH B 28 328 12 HOH HOH . 
T 4 HOH B 29 329 114 HOH HOH . 
U 4 HOH C 1 301 87 HOH HOH . 
U 4 HOH C 2 302 112 HOH HOH . 
U 4 HOH C 3 303 49 HOH HOH . 
U 4 HOH C 4 304 3 HOH HOH . 
U 4 HOH C 5 305 21 HOH HOH . 
U 4 HOH C 6 306 8 HOH HOH . 
U 4 HOH C 7 307 35 HOH HOH . 
U 4 HOH C 8 308 7 HOH HOH . 
U 4 HOH C 9 309 125 HOH HOH . 
U 4 HOH C 10 310 26 HOH HOH . 
U 4 HOH C 11 311 20 HOH HOH . 
U 4 HOH C 12 312 12 HOH HOH . 
U 4 HOH C 13 313 102 HOH HOH . 
U 4 HOH C 14 314 18 HOH HOH . 
U 4 HOH C 15 315 3 HOH HOH . 
U 4 HOH C 16 316 96 HOH HOH . 
U 4 HOH C 17 317 44 HOH HOH . 
U 4 HOH C 18 318 45 HOH HOH . 
U 4 HOH C 19 319 34 HOH HOH . 
U 4 HOH C 20 320 84 HOH HOH . 
U 4 HOH C 21 321 21 HOH HOH . 
U 4 HOH C 22 322 141 HOH HOH . 
U 4 HOH C 23 323 20 HOH HOH . 
U 4 HOH C 24 324 35 HOH HOH . 
U 4 HOH C 25 325 133 HOH HOH . 
V 4 HOH D 1 301 32 HOH HOH . 
V 4 HOH D 2 302 88 HOH HOH . 
V 4 HOH D 3 303 36 HOH HOH . 
V 4 HOH D 4 304 16 HOH HOH . 
V 4 HOH D 5 305 2 HOH HOH . 
V 4 HOH D 6 306 66 HOH HOH . 
V 4 HOH D 7 307 18 HOH HOH . 
V 4 HOH D 8 308 26 HOH HOH . 
V 4 HOH D 9 309 46 HOH HOH . 
V 4 HOH D 10 310 76 HOH HOH . 
V 4 HOH D 11 311 30 HOH HOH . 
V 4 HOH D 12 312 49 HOH HOH . 
V 4 HOH D 13 313 119 HOH HOH . 
V 4 HOH D 14 314 63 HOH HOH . 
V 4 HOH D 15 315 34 HOH HOH . 
V 4 HOH D 16 316 14 HOH HOH . 
V 4 HOH D 17 317 60 HOH HOH . 
V 4 HOH D 18 318 27 HOH HOH . 
V 4 HOH D 19 319 27 HOH HOH . 
V 4 HOH D 20 320 10 HOH HOH . 
V 4 HOH D 21 321 59 HOH HOH . 
V 4 HOH D 22 322 117 HOH HOH . 
V 4 HOH D 23 323 16 HOH HOH . 
V 4 HOH D 24 324 22 HOH HOH . 
V 4 HOH D 25 325 70 HOH HOH . 
V 4 HOH D 26 326 91 HOH HOH . 
W 4 HOH E 1 301 143 HOH HOH . 
W 4 HOH E 2 302 28 HOH HOH . 
W 4 HOH E 3 303 61 HOH HOH . 
W 4 HOH E 4 304 5 HOH HOH . 
W 4 HOH E 5 305 54 HOH HOH . 
W 4 HOH E 6 306 120 HOH HOH . 
W 4 HOH E 7 307 86 HOH HOH . 
W 4 HOH E 8 308 28 HOH HOH . 
W 4 HOH E 9 309 1 HOH HOH . 
W 4 HOH E 10 310 19 HOH HOH . 
W 4 HOH E 11 311 22 HOH HOH . 
W 4 HOH E 12 312 13 HOH HOH . 
W 4 HOH E 13 313 31 HOH HOH . 
W 4 HOH E 14 314 47 HOH HOH . 
W 4 HOH E 15 315 55 HOH HOH . 
W 4 HOH E 16 316 2 HOH HOH . 
W 4 HOH E 17 317 101 HOH HOH . 
W 4 HOH E 18 318 92 HOH HOH . 
W 4 HOH E 19 319 52 HOH HOH . 
W 4 HOH E 20 320 43 HOH HOH . 
W 4 HOH E 21 321 9 HOH HOH . 
W 4 HOH E 22 322 60 HOH HOH . 
X 4 HOH F 1 301 130 HOH HOH . 
X 4 HOH F 2 302 28 HOH HOH . 
X 4 HOH F 3 303 75 HOH HOH . 
X 4 HOH F 4 304 7 HOH HOH . 
X 4 HOH F 5 305 24 HOH HOH . 
X 4 HOH F 6 306 25 HOH HOH . 
X 4 HOH F 7 307 4 HOH HOH . 
X 4 HOH F 8 308 15 HOH HOH . 
X 4 HOH F 9 309 41 HOH HOH . 
X 4 HOH F 10 310 26 HOH HOH . 
X 4 HOH F 11 311 40 HOH HOH . 
X 4 HOH F 12 312 36 HOH HOH . 
X 4 HOH F 13 313 7 HOH HOH . 
X 4 HOH F 14 314 134 HOH HOH . 
X 4 HOH F 15 315 27 HOH HOH . 
X 4 HOH F 16 316 128 HOH HOH . 
X 4 HOH F 17 317 17 HOH HOH . 
X 4 HOH F 18 318 15 HOH HOH . 
X 4 HOH F 19 319 63 HOH HOH . 
X 4 HOH F 20 320 58 HOH HOH . 
X 4 HOH F 21 321 137 HOH HOH . 
X 4 HOH F 22 322 57 HOH HOH . 
X 4 HOH F 23 323 139 HOH HOH . 
X 4 HOH F 24 324 10 HOH HOH . 
X 4 HOH F 25 325 47 HOH HOH . 
X 4 HOH F 26 326 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . Q 3 38.121 12.583 53.215 1 44.2 ? C FMT 201 E 1 
HETATM 2 O O1 FMT . . . Q 3 36.952 12.857 53.013 1 45.33 ? O1 FMT 201 E 1 
HETATM 3 O O2 FMT . . . Q 3 38.685 11.445 52.874 1 35.6 ? O2 FMT 201 E 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           3 
#