data_7VUK
#
_model_server_result.job_id            HRsaqGy22-7jCIEhdpgXog 
_model_server_result.datetime_utc      '2024-10-19 20:17:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vuk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":506}' 
#
_entry.id    7VUK 
#
_exptl.entry_id    7VUK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VUK 
_cell.length_a            133.654 
_cell.length_b            133.654 
_cell.length_c            197.461 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VUK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,EA 1 1 
B,T,U,V,W,X,Y,Z,AA,BA,CA,DA,FA 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_455 -x-1/2,y+1/2,-z+1/4 -1 0 0 0 1 0 0 0 -1 -66.827 66.827 49.36525 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 322 A THR 322 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc2 C MG MG . A MG 501 1_555 S O2B ADP . A ADP 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc3 B OE1 GLU 9 B GLU 9 1_555 X NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? 
metalc ? metalc4 B OG1 THR 322 B THR 322 1_555 T MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc5 T MG MG . B MG 501 1_555 DA O2B ADP . B ADP 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc6 X NA NA . B NA 505 1_555 FA O HOH . B HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VUK 
_atom_sites.fract_transf_matrix[1][1]    0.007482 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007482 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 501 2 MG MG . 
D 2 MG A 1 502 4 MG MG . 
E 2 MG A 1 503 5 MG MG . 
F 3 NA A 1 504 3 NA NA . 
G 3 NA A 1 505 4 NA NA . 
H 3 NA A 1 506 5 NA NA . 
I 3 NA A 1 507 6 NA NA . 
J 3 NA A 1 508 7 NA NA . 
K 4 CL A 1 509 2 CL CL . 
L 4 CL A 1 510 3 CL CL . 
M 5 PEG A 1 511 2 PEG PEG . 
N 5 PEG A 1 512 3 PEG PEG . 
O 5 PEG A 1 513 5 PEG PEG . 
P 5 PEG A 1 514 8 PEG PEG . 
Q 5 PEG A 1 515 9 PEG PEG . 
R 5 PEG A 1 516 10 PEG PEG . 
S 6 ADP A 1 517 2 ADP ADP . 
T 2 MG B 1 501 1 MG MG . 
U 2 MG B 1 502 3 MG MG . 
V 3 NA B 1 503 1 NA NA . 
W 3 NA B 1 504 2 NA NA . 
X 3 NA B 1 505 8 NA NA . 
Y 4 CL B 1 506 1 CL CL . 
Z 5 PEG B 1 507 1 PEG PEG . 
AA 5 PEG B 1 508 4 PEG PEG . 
BA 5 PEG B 1 509 6 PEG PEG . 
CA 5 PEG B 1 510 7 PEG PEG . 
DA 6 ADP B 1 511 1 ADP ADP . 
EA 7 HOH A 1 601 43 HOH HOH . 
EA 7 HOH A 2 602 10 HOH HOH . 
EA 7 HOH A 3 603 15 HOH HOH . 
EA 7 HOH A 4 604 44 HOH HOH . 
EA 7 HOH A 5 605 61 HOH HOH . 
EA 7 HOH A 6 606 62 HOH HOH . 
EA 7 HOH A 7 607 52 HOH HOH . 
EA 7 HOH A 8 608 2 HOH HOH . 
EA 7 HOH A 9 609 69 HOH HOH . 
EA 7 HOH A 10 610 14 HOH HOH . 
EA 7 HOH A 11 611 71 HOH HOH . 
EA 7 HOH A 12 612 72 HOH HOH . 
EA 7 HOH A 13 613 59 HOH HOH . 
EA 7 HOH A 14 614 31 HOH HOH . 
EA 7 HOH A 15 615 54 HOH HOH . 
EA 7 HOH A 16 616 33 HOH HOH . 
EA 7 HOH A 17 617 11 HOH HOH . 
EA 7 HOH A 18 618 65 HOH HOH . 
EA 7 HOH A 19 619 12 HOH HOH . 
EA 7 HOH A 20 620 21 HOH HOH . 
EA 7 HOH A 21 621 37 HOH HOH . 
EA 7 HOH A 22 622 38 HOH HOH . 
EA 7 HOH A 23 623 41 HOH HOH . 
EA 7 HOH A 24 624 27 HOH HOH . 
EA 7 HOH A 25 625 68 HOH HOH . 
EA 7 HOH A 26 626 30 HOH HOH . 
FA 7 HOH B 1 601 74 HOH HOH . 
FA 7 HOH B 2 602 25 HOH HOH . 
FA 7 HOH B 3 603 32 HOH HOH . 
FA 7 HOH B 4 604 34 HOH HOH . 
FA 7 HOH B 5 605 17 HOH HOH . 
FA 7 HOH B 6 606 3 HOH HOH . 
FA 7 HOH B 7 607 23 HOH HOH . 
FA 7 HOH B 8 608 47 HOH HOH . 
FA 7 HOH B 9 609 55 HOH HOH . 
FA 7 HOH B 10 610 35 HOH HOH . 
FA 7 HOH B 11 611 26 HOH HOH . 
FA 7 HOH B 12 612 63 HOH HOH . 
FA 7 HOH B 13 613 46 HOH HOH . 
FA 7 HOH B 14 614 39 HOH HOH . 
FA 7 HOH B 15 615 24 HOH HOH . 
FA 7 HOH B 16 616 29 HOH HOH . 
FA 7 HOH B 17 617 56 HOH HOH . 
FA 7 HOH B 18 618 40 HOH HOH . 
FA 7 HOH B 19 619 13 HOH HOH . 
FA 7 HOH B 20 620 1 HOH HOH . 
FA 7 HOH B 21 621 5 HOH HOH . 
FA 7 HOH B 22 622 48 HOH HOH . 
FA 7 HOH B 23 623 53 HOH HOH . 
FA 7 HOH B 24 624 51 HOH HOH . 
FA 7 HOH B 25 625 70 HOH HOH . 
FA 7 HOH B 26 626 36 HOH HOH . 
FA 7 HOH B 27 627 64 HOH HOH . 
FA 7 HOH B 28 628 75 HOH HOH . 
FA 7 HOH B 29 629 66 HOH HOH . 
FA 7 HOH B 30 630 67 HOH HOH . 
FA 7 HOH B 31 631 19 HOH HOH . 
FA 7 HOH B 32 632 22 HOH HOH . 
FA 7 HOH B 33 633 73 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               4.311 
_atom_site.Cartn_y               59.845 
_atom_site.Cartn_z               15.829 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.13 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           506 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#