data_7VUN
#
_model_server_result.job_id            f_aEiArSxOH5w9oSyou3XQ 
_model_server_result.datetime_utc      '2024-11-29 09:08:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vun 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    7VUN 
#
_exptl.entry_id    7VUN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              575.611 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S},3~{S})-2-[[6-[(3-cyanophenyl)methoxy]-2-(2-methyl-3-phenyl-phenyl)-1,3-bis(oxidanylidene)isoindol-5-yl]methylamino]-3-oxidanyl-butanoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VUN 
_cell.length_a            84.033 
_cell.length_b            97.864 
_cell.length_c            136.31 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VUN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 B CYS 40 1_555 A SG CYS 97 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 B SG CYS 23 A CYS 40 1_555 B SG CYS 97 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 C SG CYS 23 C CYS 40 1_555 C SG CYS 97 C CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 D SG CYS 23 D CYS 40 1_555 D SG CYS 97 D CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 E SG CYS 23 E CYS 40 1_555 E SG CYS 97 E CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 F SG CYS 23 F CYS 40 1_555 F SG CYS 97 F CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 G SG CYS 23 G CYS 40 1_555 G SG CYS 97 G CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 H SG CYS 23 H CYS 40 1_555 H SG CYS 97 H CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C34 H29 N3 O6' 
_chem_comp.formula_weight    575.611 
_chem_comp.id                8H7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S},3~{S})-2-[[6-[(3-cyanophenyl)methoxy]-2-(2-methyl-3-phenyl-phenyl)-1,3-bis(oxidanylidene)isoindol-5-yl]methylamino]-3-oxidanyl-butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O31 C29 8H7 doub 1 n n 
C25 C23 8H7 sing 2 n n 
C25 N26 8H7 sing 3 n n 
C29 C27 8H7 sing 4 n n 
C29 O30 8H7 sing 5 n n 
C27 N26 8H7 sing 6 n n 
C27 C28 8H7 sing 7 n n 
C23 C24 8H7 doub 8 n y 
C23 C22 8H7 sing 9 n y 
C24 C17 8H7 sing 10 n y 
O34 C22 8H7 sing 11 n n 
O34 C35 8H7 sing 12 n n 
C33 C28 8H7 sing 13 n n 
C22 C21 8H7 doub 14 n y 
C41 C40 8H7 doub 15 n y 
C41 C36 8H7 sing 16 n y 
O32 C28 8H7 sing 17 n n 
O19 C18 8H7 doub 18 n n 
C17 C18 8H7 sing 19 n n 
C17 C16 8H7 doub 20 n y 
C40 C39 8H7 sing 21 n y 
C18 N14 8H7 sing 22 n n 
C10 C09 8H7 doub 23 n y 
C10 C11 8H7 sing 24 n y 
C21 C16 8H7 sing 25 n y 
C16 C15 8H7 sing 26 n n 
C35 C36 8H7 sing 27 n n 
C09 C08 8H7 sing 28 n y 
C36 C37 8H7 doub 29 n y 
N14 C15 8H7 sing 30 n n 
N14 C11 8H7 sing 31 n n 
C15 O20 8H7 doub 32 n n 
C39 C38 8H7 doub 33 n y 
C11 C12 8H7 doub 34 n y 
C37 C38 8H7 sing 35 n y 
C08 C07 8H7 doub 36 n y 
C38 C42 8H7 sing 37 n n 
C12 C07 8H7 sing 38 n y 
C12 C13 8H7 sing 39 n n 
C07 C04 8H7 sing 40 n n 
C42 N43 8H7 trip 41 n n 
C04 C05 8H7 doub 42 n y 
C04 C03 8H7 sing 43 n y 
C05 C06 8H7 sing 44 n y 
C03 C02 8H7 doub 45 n y 
C06 C01 8H7 doub 46 n y 
C02 C01 8H7 sing 47 n y 
C01 H1 8H7 sing 48 n n 
C02 H2 8H7 sing 49 n n 
C03 H3 8H7 sing 50 n n 
C05 H4 8H7 sing 51 n n 
C06 H5 8H7 sing 52 n n 
C08 H6 8H7 sing 53 n n 
C09 H7 8H7 sing 54 n n 
C10 H8 8H7 sing 55 n n 
C13 H9 8H7 sing 56 n n 
C13 H10 8H7 sing 57 n n 
C13 H11 8H7 sing 58 n n 
C21 H12 8H7 sing 59 n n 
C24 H13 8H7 sing 60 n n 
C25 H14 8H7 sing 61 n n 
C25 H15 8H7 sing 62 n n 
C27 H16 8H7 sing 63 n n 
C28 H17 8H7 sing 64 n n 
C33 H18 8H7 sing 65 n n 
C33 H19 8H7 sing 66 n n 
C33 H20 8H7 sing 67 n n 
C35 H21 8H7 sing 68 n n 
C35 H22 8H7 sing 69 n n 
C37 H23 8H7 sing 70 n n 
C39 H24 8H7 sing 71 n n 
C40 H25 8H7 sing 72 n n 
C41 H26 8H7 sing 73 n n 
N26 H27 8H7 sing 74 n n 
O30 H29 8H7 sing 75 n n 
O32 H30 8H7 sing 76 n n 
#
_atom_sites.entry_id                     7VUN 
_atom_sites.fract_transf_matrix[1][1]    0.0119 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010218 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 8H7 C 1 201 1 8H7 CSX . 
J 2 8H7 D 1 201 3 8H7 CSX . 
K 2 8H7 F 1 201 2 8H7 CSX . 
L 2 8H7 H 1 201 4 8H7 CSX . 
M 3 HOH B 1 201 14 HOH HOH . 
M 3 HOH B 2 202 20 HOH HOH . 
M 3 HOH B 3 203 5 HOH HOH . 
M 3 HOH B 4 204 139 HOH HOH . 
M 3 HOH B 5 205 1 HOH HOH . 
M 3 HOH B 6 206 38 HOH HOH . 
M 3 HOH B 7 207 82 HOH HOH . 
N 3 HOH A 1 201 23 HOH HOH . 
N 3 HOH A 2 202 64 HOH HOH . 
N 3 HOH A 3 203 8 HOH HOH . 
N 3 HOH A 4 204 16 HOH HOH . 
N 3 HOH A 5 205 106 HOH HOH . 
N 3 HOH A 6 206 108 HOH HOH . 
O 3 HOH C 1 301 31 HOH HOH . 
O 3 HOH C 2 302 2 HOH HOH . 
O 3 HOH C 3 303 60 HOH HOH . 
O 3 HOH C 4 304 7 HOH HOH . 
O 3 HOH C 5 305 53 HOH HOH . 
O 3 HOH C 6 306 17 HOH HOH . 
O 3 HOH C 7 307 42 HOH HOH . 
O 3 HOH C 8 308 6 HOH HOH . 
O 3 HOH C 9 309 15 HOH HOH . 
O 3 HOH C 10 310 41 HOH HOH . 
O 3 HOH C 11 311 51 HOH HOH . 
O 3 HOH C 12 312 115 HOH HOH . 
P 3 HOH D 1 301 105 HOH HOH . 
P 3 HOH D 2 302 13 HOH HOH . 
P 3 HOH D 3 303 27 HOH HOH . 
P 3 HOH D 4 304 21 HOH HOH . 
P 3 HOH D 5 305 4 HOH HOH . 
P 3 HOH D 6 306 22 HOH HOH . 
P 3 HOH D 7 307 34 HOH HOH . 
P 3 HOH D 8 308 11 HOH HOH . 
P 3 HOH D 9 309 94 HOH HOH . 
P 3 HOH D 10 310 29 HOH HOH . 
P 3 HOH D 11 311 61 HOH HOH . 
P 3 HOH D 12 312 114 HOH HOH . 
Q 3 HOH E 1 201 26 HOH HOH . 
Q 3 HOH E 2 202 12 HOH HOH . 
Q 3 HOH E 3 203 47 HOH HOH . 
Q 3 HOH E 4 204 121 HOH HOH . 
R 3 HOH F 1 301 32 HOH HOH . 
R 3 HOH F 2 302 109 HOH HOH . 
R 3 HOH F 3 303 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 8H7 . . . I 2 33.812 -21.845 -29.558 1 22.68 ? C01 8H7 201 C 1 
HETATM 2 C C02 8H7 . . . I 2 34.334 -23.21 -30.005 1 23.18 ? C02 8H7 201 C 1 
HETATM 3 C C03 8H7 . . . I 2 34.275 -23.562 -31.272 1 23.81 ? C03 8H7 201 C 1 
HETATM 4 C C04 8H7 . . . I 2 33.675 -22.609 -32.306 1 24.42 ? C04 8H7 201 C 1 
HETATM 5 C C05 8H7 . . . I 2 33.234 -21.428 -31.918 1 23.36 ? C05 8H7 201 C 1 
HETATM 6 C C06 8H7 . . . I 2 33.305 -21.021 -30.448 1 22.97 ? C06 8H7 201 C 1 
HETATM 7 C C07 8H7 . . . I 2 33.607 -22.965 -33.801 1 26.03 ? C07 8H7 201 C 1 
HETATM 8 C C08 8H7 . . . I 2 34.32 -22.282 -34.677 1 26.4 ? C08 8H7 201 C 1 
HETATM 9 C C09 8H7 . . . I 2 34.256 -22.608 -36.168 1 27.48 ? C09 8H7 201 C 1 
HETATM 10 C C10 8H7 . . . I 2 33.483 -23.588 -36.592 1 28.53 ? C10 8H7 201 C 1 
HETATM 11 C C11 8H7 . . . I 2 32.66 -24.381 -35.584 1 29.09 ? C11 8H7 201 C 1 
HETATM 12 C C12 8H7 . . . I 2 32.725 -24.093 -34.289 1 26.89 ? C12 8H7 201 C 1 
HETATM 13 C C13 8H7 . . . I 2 31.94 -24.84 -33.22 1 26.39 ? C13 8H7 201 C 1 
HETATM 14 C C15 8H7 . . . I 2 30.435 -25.473 -35.804 1 33 ? C15 8H7 201 C 1 
HETATM 15 C C16 8H7 . . . I 2 29.878 -26.887 -36.432 1 34.33 ? C16 8H7 201 C 1 
HETATM 16 C C17 8H7 . . . I 2 31.115 -27.478 -36.963 1 34.95 ? C17 8H7 201 C 1 
HETATM 17 C C18 8H7 . . . I 2 32.178 -26.519 -36.655 1 34.6 ? C18 8H7 201 C 1 
HETATM 18 C C21 8H7 . . . I 2 28.665 -27.489 -36.517 1 35.23 ? C21 8H7 201 C 1 
HETATM 19 C C22 8H7 . . . I 2 28.595 -28.738 -37.16 1 37.26 ? C22 8H7 201 C 1 
HETATM 20 C C23 8H7 . . . I 2 29.793 -29.335 -37.696 1 37.66 ? C23 8H7 201 C 1 
HETATM 21 C C24 8H7 . . . I 2 31.05 -28.693 -37.582 1 36.16 ? C24 8H7 201 C 1 
HETATM 22 C C25 8H7 . . . I 2 29.706 -30.694 -38.383 1 39.41 ? C25 8H7 201 C 1 
HETATM 23 C C27 8H7 . . . I 2 29.668 -33.033 -37.84 1 41.66 ? C27 8H7 201 C 1 
HETATM 24 C C28 8H7 . . . I 2 30.335 -34.037 -36.899 1 42.4 ? C28 8H7 201 C 1 
HETATM 25 C C29 8H7 . . . I 2 28.141 -33.247 -37.912 1 41.37 ? C29 8H7 201 C 1 
HETATM 26 C C33 8H7 . . . I 2 31.823 -34.082 -37.222 1 43.15 ? C33 8H7 201 C 1 
HETATM 27 C C35 8H7 . . . I 2 26.373 -28.875 -36.399 1 37.08 ? C35 8H7 201 C 1 
HETATM 28 C C36 8H7 . . . I 2 25.279 -29.907 -36.164 1 37.02 ? C36 8H7 201 C 1 
HETATM 29 C C37 8H7 . . . I 2 24.614 -29.985 -34.793 1 37.1 ? C37 8H7 201 C 1 
HETATM 30 C C38 8H7 . . . I 2 23.653 -30.868 -34.573 1 37.64 ? C38 8H7 201 C 1 
HETATM 31 C C39 8H7 . . . I 2 23.206 -31.815 -35.685 1 36.81 ? C39 8H7 201 C 1 
HETATM 32 C C40 8H7 . . . I 2 23.785 -31.744 -36.867 1 36.36 ? C40 8H7 201 C 1 
HETATM 33 C C41 8H7 . . . I 2 24.895 -30.722 -37.129 1 36.47 ? C41 8H7 201 C 1 
HETATM 34 C C42 8H7 . . . I 2 23.01 -30.926 -33.186 1 38.53 ? C42 8H7 201 C 1 
HETATM 35 N N14 8H7 . . . I 2 31.798 -25.464 -36.023 1 32.38 ? N14 8H7 201 C 1 
HETATM 36 N N26 8H7 . . . I 2 30.017 -31.698 -37.378 1 40.42 ? N26 8H7 201 C 1 
HETATM 37 N N43 8H7 . . . I 2 22.55 -30.95 -32.154 1 38.83 ? N43 8H7 201 C 1 
HETATM 38 O O19 8H7 . . . I 2 33.525 -26.721 -37.006 1 35.69 ? O19 8H7 201 C 1 
HETATM 39 O O20 8H7 . . . I 2 29.673 -24.504 -35.141 1 32.47 ? O20 8H7 201 C 1 
HETATM 40 O O30 8H7 . . . I 2 27.357 -32.728 -37.065 1 41 ? O30 8H7 201 C 1 
HETATM 41 O O31 8H7 . . . I 2 27.657 -33.962 -38.836 1 41.59 ? O31 8H7 201 C 1 
HETATM 42 O O32 8H7 . . . I 2 29.792 -35.309 -37.101 1 43.15 ? O32 8H7 201 C 1 
HETATM 43 O O34 8H7 . . . I 2 27.35 -29.383 -37.268 1 38.06 ? O34 8H7 201 C 1 
#
_model_server_stats.io_time_ms              217 
_model_server_stats.parse_time_ms           55 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           1166 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#