data_7VUR # _model_server_result.job_id P5zOaM14LGrxV73gWvNNWw _model_server_result.datetime_utc '2024-11-29 18:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":102}' # _entry.id 7VUR # _exptl.entry_id 7VUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VUR _cell.length_a 27.376 _cell.length_b 58.711 _cell.length_c 87.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 15 A ARG 15 1_555 F CA CA . A CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A OD1 ASP 18 A ASP 18 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A O ASP 18 A ASP 18 1_555 F CA CA . A CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A OD1 ASP 20 A ASP 20 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A OD1 ASN 22 A ASN 22 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc6 A O TYR 24 A TYR 24 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 A OE1 GLU 29 A GLU 29 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc8 A OE2 GLU 29 A GLU 29 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc9 A OD1 ASP 54 A ASP 54 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 A OD1 ASP 56 A ASP 56 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc11 A OD1 ASP 58 A ASP 58 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc12 A O GLN 60 A GLN 60 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 A OE1 GLU 65 A GLU 65 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc14 A OE2 GLU 65 A GLU 65 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc15 F CA CA . A CA 104 4_465 B OE1 GLU 64 B GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc16 F CA CA . A CA 104 4_465 B OE2 GLU 64 B GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc17 B OD1 ASP 18 B ASP 18 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc18 B OD1 ASP 20 B ASP 20 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc19 B OD1 ASN 22 B ASN 22 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc20 B O TYR 24 B TYR 24 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc21 B OE1 GLU 29 B GLU 29 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc22 B OE2 GLU 29 B GLU 29 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc23 B OD1 ASP 54 B ASP 54 1_555 I CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc24 B OD1 ASP 56 B ASP 56 1_555 I CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc25 B OD1 ASP 58 B ASP 58 1_555 I CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc26 B O GLN 60 B GLN 60 1_555 I CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc27 B OE1 GLU 65 B GLU 65 1_555 I CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc28 B OE2 GLU 65 B GLU 65 1_555 I CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VUR _atom_sites.fract_transf_matrix[1][1] 0.036528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 101 101 MPD MPD . D 3 CA A 1 102 3 CA CA . E 3 CA A 1 103 4 CA CA . F 3 CA A 1 104 5 CA CA . G 2 MPD B 1 101 101 MPD MPD . H 3 CA B 1 102 1 CA CA . I 3 CA B 1 103 2 CA CA . J 4 HOH A 1 201 84 HOH HOH . J 4 HOH A 2 202 54 HOH HOH . J 4 HOH A 3 203 86 HOH HOH . J 4 HOH A 4 204 88 HOH HOH . J 4 HOH A 5 205 92 HOH HOH . J 4 HOH A 6 206 36 HOH HOH . J 4 HOH A 7 207 26 HOH HOH . J 4 HOH A 8 208 45 HOH HOH . J 4 HOH A 9 209 65 HOH HOH . J 4 HOH A 10 210 10 HOH HOH . J 4 HOH A 11 211 17 HOH HOH . J 4 HOH A 12 212 73 HOH HOH . J 4 HOH A 13 213 71 HOH HOH . J 4 HOH A 14 214 18 HOH HOH . J 4 HOH A 15 215 7 HOH HOH . J 4 HOH A 16 216 4 HOH HOH . J 4 HOH A 17 217 9 HOH HOH . J 4 HOH A 18 218 15 HOH HOH . J 4 HOH A 19 219 23 HOH HOH . J 4 HOH A 20 220 70 HOH HOH . J 4 HOH A 21 221 90 HOH HOH . J 4 HOH A 22 222 11 HOH HOH . J 4 HOH A 23 223 74 HOH HOH . J 4 HOH A 24 224 77 HOH HOH . J 4 HOH A 25 225 58 HOH HOH . J 4 HOH A 26 226 16 HOH HOH . J 4 HOH A 27 227 6 HOH HOH . J 4 HOH A 28 228 28 HOH HOH . J 4 HOH A 29 229 81 HOH HOH . J 4 HOH A 30 230 82 HOH HOH . J 4 HOH A 31 231 51 HOH HOH . J 4 HOH A 32 232 66 HOH HOH . J 4 HOH A 33 233 31 HOH HOH . J 4 HOH A 34 234 68 HOH HOH . J 4 HOH A 35 235 8 HOH HOH . J 4 HOH A 36 236 42 HOH HOH . J 4 HOH A 37 237 63 HOH HOH . J 4 HOH A 38 238 49 HOH HOH . J 4 HOH A 39 239 60 HOH HOH . J 4 HOH A 40 240 91 HOH HOH . J 4 HOH A 41 241 33 HOH HOH . J 4 HOH A 42 242 41 HOH HOH . J 4 HOH A 43 243 32 HOH HOH . J 4 HOH A 44 244 78 HOH HOH . K 4 HOH B 1 201 72 HOH HOH . K 4 HOH B 2 202 55 HOH HOH . K 4 HOH B 3 203 19 HOH HOH . K 4 HOH B 4 204 27 HOH HOH . K 4 HOH B 5 205 30 HOH HOH . K 4 HOH B 6 206 13 HOH HOH . K 4 HOH B 7 207 37 HOH HOH . K 4 HOH B 8 208 14 HOH HOH . K 4 HOH B 9 209 76 HOH HOH . K 4 HOH B 10 210 3 HOH HOH . K 4 HOH B 11 211 34 HOH HOH . K 4 HOH B 12 212 5 HOH HOH . K 4 HOH B 13 213 50 HOH HOH . K 4 HOH B 14 214 85 HOH HOH . K 4 HOH B 15 215 47 HOH HOH . K 4 HOH B 16 216 79 HOH HOH . K 4 HOH B 17 217 1 HOH HOH . K 4 HOH B 18 218 20 HOH HOH . K 4 HOH B 19 219 57 HOH HOH . K 4 HOH B 20 220 22 HOH HOH . K 4 HOH B 21 221 43 HOH HOH . K 4 HOH B 22 222 67 HOH HOH . K 4 HOH B 23 223 12 HOH HOH . K 4 HOH B 24 224 25 HOH HOH . K 4 HOH B 25 225 69 HOH HOH . K 4 HOH B 26 226 89 HOH HOH . K 4 HOH B 27 227 83 HOH HOH . K 4 HOH B 28 228 52 HOH HOH . K 4 HOH B 29 229 44 HOH HOH . K 4 HOH B 30 230 80 HOH HOH . K 4 HOH B 31 231 38 HOH HOH . K 4 HOH B 32 232 39 HOH HOH . K 4 HOH B 33 233 40 HOH HOH . K 4 HOH B 34 234 59 HOH HOH . K 4 HOH B 35 235 87 HOH HOH . K 4 HOH B 36 236 2 HOH HOH . K 4 HOH B 37 237 29 HOH HOH . K 4 HOH B 38 238 24 HOH HOH . K 4 HOH B 39 239 35 HOH HOH . K 4 HOH B 40 240 56 HOH HOH . K 4 HOH B 41 241 21 HOH HOH . K 4 HOH B 42 242 53 HOH HOH . K 4 HOH B 43 243 62 HOH HOH . K 4 HOH B 44 244 75 HOH HOH . K 4 HOH B 45 245 48 HOH HOH . K 4 HOH B 46 246 64 HOH HOH . K 4 HOH B 47 247 46 HOH HOH . K 4 HOH B 48 248 61 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.286 _atom_site.Cartn_y 47.362 _atom_site.Cartn_z 12.25 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 5.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #