data_7VUT # _model_server_result.job_id 9d_xApgw8nVCkhvWtmzZEQ _model_server_result.datetime_utc '2024-10-10 03:20:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 7VUT # _exptl.entry_id 7VUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VUT _cell.length_a 27.313 _cell.length_b 50.499 _cell.length_c 88.246 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 12 A GLU 12 1_555 E CA CA . A CA 103 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc2 A OE2 GLU 12 A GLU 12 1_555 E CA CA . A CA 103 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc3 A OD1 ASP 18 A ASP 18 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A OD1 ASP 20 A ASP 20 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 A OD1 ASN 22 A ASN 22 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc6 A O TYR 24 A TYR 24 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 A OE1 GLU 29 A GLU 29 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc8 A OE2 GLU 29 A GLU 29 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc9 A OE1 GLU 52 A GLU 52 1_555 E CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc10 A OD1 ASP 54 A ASP 54 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc11 A OD1 ASP 56 A ASP 56 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc12 A OD1 ASP 58 A ASP 58 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc13 A O GLN 60 A GLN 60 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 A OE1 GLU 64 A GLU 64 1_555 H CA CA . B CA 103 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc15 A OE2 GLU 64 A GLU 64 1_555 H CA CA . B CA 103 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc16 A OE1 GLU 65 A GLU 65 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc17 A OE2 GLU 65 A GLU 65 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc18 I O HOH . A HOH 251 4_456 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc19 B O ARG 15 B ARG 15 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc20 B OD1 ASP 18 B ASP 18 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc21 B O ASP 18 B ASP 18 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc22 B OD1 ASP 20 B ASP 20 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc23 B OD1 ASN 22 B ASN 22 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc24 B O TYR 24 B TYR 24 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc25 B OE1 GLU 29 B GLU 29 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc26 B OE2 GLU 29 B GLU 29 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc27 B OD1 ASP 54 B ASP 54 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc28 B OD1 ASP 56 B ASP 56 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc29 B OD1 ASP 58 B ASP 58 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc30 B O GLN 60 B GLN 60 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc31 B OE1 GLU 65 B GLU 65 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc32 B OE2 GLU 65 B GLU 65 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VUT _atom_sites.fract_transf_matrix[1][1] 0.036613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 101 1 CA CA . D 2 CA A 1 102 2 CA CA . E 2 CA A 1 103 7 CA CA . F 2 CA B 1 101 4 CA CA . G 2 CA B 1 102 5 CA CA . H 2 CA B 1 103 6 CA CA . I 3 HOH A 1 201 122 HOH HOH . I 3 HOH A 2 202 91 HOH HOH . I 3 HOH A 3 203 39 HOH HOH . I 3 HOH A 4 204 155 HOH HOH . I 3 HOH A 5 205 117 HOH HOH . I 3 HOH A 6 206 3 HOH HOH . I 3 HOH A 7 207 121 HOH HOH . I 3 HOH A 8 208 48 HOH HOH . I 3 HOH A 9 209 12 HOH HOH . I 3 HOH A 10 210 80 HOH HOH . I 3 HOH A 11 211 18 HOH HOH . I 3 HOH A 12 212 40 HOH HOH . I 3 HOH A 13 213 41 HOH HOH . I 3 HOH A 14 214 46 HOH HOH . I 3 HOH A 15 215 44 HOH HOH . I 3 HOH A 16 216 16 HOH HOH . I 3 HOH A 17 217 34 HOH HOH . I 3 HOH A 18 218 70 HOH HOH . I 3 HOH A 19 219 71 HOH HOH . I 3 HOH A 20 220 33 HOH HOH . I 3 HOH A 21 221 35 HOH HOH . I 3 HOH A 22 222 50 HOH HOH . I 3 HOH A 23 223 53 HOH HOH . I 3 HOH A 24 224 84 HOH HOH . I 3 HOH A 25 225 114 HOH HOH . I 3 HOH A 26 226 95 HOH HOH . I 3 HOH A 27 227 13 HOH HOH . I 3 HOH A 28 228 137 HOH HOH . I 3 HOH A 29 229 23 HOH HOH . I 3 HOH A 30 230 62 HOH HOH . I 3 HOH A 31 231 110 HOH HOH . I 3 HOH A 32 232 79 HOH HOH . I 3 HOH A 33 233 22 HOH HOH . I 3 HOH A 34 234 14 HOH HOH . I 3 HOH A 35 235 113 HOH HOH . I 3 HOH A 36 236 17 HOH HOH . I 3 HOH A 37 237 64 HOH HOH . I 3 HOH A 38 238 81 HOH HOH . I 3 HOH A 39 239 103 HOH HOH . I 3 HOH A 40 240 29 HOH HOH . I 3 HOH A 41 241 52 HOH HOH . I 3 HOH A 42 242 67 HOH HOH . I 3 HOH A 43 243 31 HOH HOH . I 3 HOH A 44 244 58 HOH HOH . I 3 HOH A 45 245 38 HOH HOH . I 3 HOH A 46 246 6 HOH HOH . I 3 HOH A 47 247 112 HOH HOH . I 3 HOH A 48 248 90 HOH HOH . I 3 HOH A 49 249 60 HOH HOH . I 3 HOH A 50 250 69 HOH HOH . I 3 HOH A 51 251 42 HOH HOH . I 3 HOH A 52 252 86 HOH HOH . I 3 HOH A 53 253 161 HOH HOH . I 3 HOH A 54 254 109 HOH HOH . I 3 HOH A 55 255 124 HOH HOH . I 3 HOH A 56 256 130 HOH HOH . I 3 HOH A 57 257 20 HOH HOH . I 3 HOH A 58 258 128 HOH HOH . I 3 HOH A 59 259 127 HOH HOH . I 3 HOH A 60 260 105 HOH HOH . I 3 HOH A 61 261 36 HOH HOH . I 3 HOH A 62 262 131 HOH HOH . I 3 HOH A 63 263 146 HOH HOH . I 3 HOH A 64 264 74 HOH HOH . I 3 HOH A 65 265 126 HOH HOH . J 3 HOH B 1 201 51 HOH HOH . J 3 HOH B 2 202 21 HOH HOH . J 3 HOH B 3 203 49 HOH HOH . J 3 HOH B 4 204 10 HOH HOH . J 3 HOH B 5 205 61 HOH HOH . J 3 HOH B 6 206 132 HOH HOH . J 3 HOH B 7 207 65 HOH HOH . J 3 HOH B 8 208 4 HOH HOH . J 3 HOH B 9 209 68 HOH HOH . J 3 HOH B 10 210 115 HOH HOH . J 3 HOH B 11 211 7 HOH HOH . J 3 HOH B 12 212 85 HOH HOH . J 3 HOH B 13 213 100 HOH HOH . J 3 HOH B 14 214 66 HOH HOH . J 3 HOH B 15 215 78 HOH HOH . J 3 HOH B 16 216 15 HOH HOH . J 3 HOH B 17 217 25 HOH HOH . J 3 HOH B 18 218 19 HOH HOH . J 3 HOH B 19 219 8 HOH HOH . J 3 HOH B 20 220 158 HOH HOH . J 3 HOH B 21 221 54 HOH HOH . J 3 HOH B 22 222 89 HOH HOH . J 3 HOH B 23 223 118 HOH HOH . J 3 HOH B 24 224 9 HOH HOH . J 3 HOH B 25 225 2 HOH HOH . J 3 HOH B 26 226 1 HOH HOH . J 3 HOH B 27 227 32 HOH HOH . J 3 HOH B 28 228 5 HOH HOH . J 3 HOH B 29 229 11 HOH HOH . J 3 HOH B 30 230 43 HOH HOH . J 3 HOH B 31 231 37 HOH HOH . J 3 HOH B 32 232 45 HOH HOH . J 3 HOH B 33 233 76 HOH HOH . J 3 HOH B 34 234 55 HOH HOH . J 3 HOH B 35 235 153 HOH HOH . J 3 HOH B 36 236 107 HOH HOH . J 3 HOH B 37 237 24 HOH HOH . J 3 HOH B 38 238 56 HOH HOH . J 3 HOH B 39 239 92 HOH HOH . J 3 HOH B 40 240 119 HOH HOH . J 3 HOH B 41 241 73 HOH HOH . J 3 HOH B 42 242 77 HOH HOH . J 3 HOH B 43 243 59 HOH HOH . J 3 HOH B 44 244 123 HOH HOH . J 3 HOH B 45 245 96 HOH HOH . J 3 HOH B 46 246 154 HOH HOH . J 3 HOH B 47 247 111 HOH HOH . J 3 HOH B 48 248 57 HOH HOH . J 3 HOH B 49 249 27 HOH HOH . J 3 HOH B 50 250 28 HOH HOH . J 3 HOH B 51 251 47 HOH HOH . J 3 HOH B 52 252 72 HOH HOH . J 3 HOH B 53 253 99 HOH HOH . J 3 HOH B 54 254 98 HOH HOH . J 3 HOH B 55 255 162 HOH HOH . J 3 HOH B 56 256 75 HOH HOH . J 3 HOH B 57 257 139 HOH HOH . J 3 HOH B 58 258 156 HOH HOH . J 3 HOH B 59 259 63 HOH HOH . J 3 HOH B 60 260 147 HOH HOH . J 3 HOH B 61 261 157 HOH HOH . J 3 HOH B 62 262 93 HOH HOH . J 3 HOH B 63 263 30 HOH HOH . J 3 HOH B 64 264 83 HOH HOH . J 3 HOH B 65 265 26 HOH HOH . J 3 HOH B 66 266 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.634 _atom_site.Cartn_y 18.219 _atom_site.Cartn_z 42.229 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 3.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #