data_7VV5 # _model_server_result.job_id aRd4lzoY4G3qguuNai0gKw _model_server_result.datetime_utc '2024-10-11 00:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7VV5 # _exptl.entry_id 7VV5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 519.718 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-methoxy-3-[[2-methoxy-3-[[2-methoxy-5-[2-(methylamino)ethyl]phenyl]methyl]-5-[2-(methylamino)ethyl]phenyl]methyl]phenyl]-~{N}-methyl-ethanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VV5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 139 B CYS 121 1_555 B SG CYS 167 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 D SG CYS 197 S CYS 147 1_555 D SG CYS 267 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 E SG CYS 26 R CYS 26 1_555 E SG CYS 258 R CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 E SG CYS 168 R CYS 168 1_555 E SG CYS 180 R CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C32 H45 N3 O3' _chem_comp.formula_weight 519.718 _chem_comp.id 6IB _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-methoxy-3-[[2-methoxy-3-[[2-methoxy-5-[2-(methylamino)ethyl]phenyl]methyl]-5-[2-(methylamino)ethyl]phenyl]methyl]phenyl]-~{N}-methyl-ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VV5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 301 CLR CLR . G 7 6IB R 1 402 401 6IB LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6IB . . . G 7 101.49 68.077 83.018 1 111.2 ? C10 6IB 402 R 1 HETATM 2 C C13 6IB . . . G 7 97.299 67.894 82.05 1 111.2 ? C13 6IB 402 R 1 HETATM 3 C C15 6IB . . . G 7 96.774 69.885 83.559 1 111.2 ? C15 6IB 402 R 1 HETATM 4 C C17 6IB . . . G 7 101.908 67.135 84.124 1 111.2 ? C17 6IB 402 R 1 HETATM 5 C C20 6IB . . . G 7 101.012 66.377 84.898 1 111.2 ? C20 6IB 402 R 1 HETATM 6 C C21 6IB . . . G 7 98.454 62.087 80.803 1 111.2 ? C21 6IB 402 R 1 HETATM 7 C C22 6IB . . . G 7 101.376 65.49 85.937 1 111.2 ? C22 6IB 402 R 1 HETATM 8 C C24 6IB . . . G 7 103.264 66.988 84.413 1 111.2 ? C24 6IB 402 R 1 HETATM 9 C C26 6IB . . . G 7 100.376 64.683 86.763 1 111.2 ? C26 6IB 402 R 1 HETATM 10 C C28 6IB . . . G 7 102.739 65.392 86.172 1 111.2 ? C28 6IB 402 R 1 HETATM 11 C C7 6IB . . . G 7 98.14 66.957 81.45 1 111.2 ? C7 6IB 402 R 1 HETATM 12 C C8 6IB . . . G 7 100.029 68 82.652 1 111.2 ? C8 6IB 402 R 1 HETATM 13 C C9 6IB . . . G 7 97.567 65.908 80.512 1 111.2 ? C9 6IB 402 R 1 HETATM 14 C C11 6IB . . . G 7 97.75 68.885 82.94 1 111.2 ? C11 6IB 402 R 1 HETATM 15 C C12 6IB . . . G 7 99.507 67.03 81.78 1 111.2 ? C12 6IB 402 R 1 HETATM 16 C C14 6IB . . . G 7 99.125 68.903 83.218 1 111.2 ? C14 6IB 402 R 1 HETATM 17 C C16 6IB . . . G 7 97.664 64.462 81.019 1 111.2 ? C16 6IB 402 R 1 HETATM 18 C C18 6IB . . . G 7 96.934 70.172 85.069 1 111.2 ? C18 6IB 402 R 1 HETATM 19 C C19 6IB . . . G 7 98.348 63.422 80.347 1 111.2 ? C19 6IB 402 R 1 HETATM 20 C C23 6IB . . . G 7 97.062 64.108 82.238 1 111.2 ? C23 6IB 402 R 1 HETATM 21 C C25 6IB . . . G 7 99.189 60.967 80.063 1 111.2 ? C25 6IB 402 R 1 HETATM 22 C C27 6IB . . . G 7 97.826 61.812 82.019 1 111.2 ? C27 6IB 402 R 1 HETATM 23 C C29 6IB . . . G 7 97.149 62.801 82.715 1 111.2 ? C29 6IB 402 R 1 HETATM 24 C C30 6IB . . . G 7 103.658 66.123 85.429 1 111.2 ? C30 6IB 402 R 1 HETATM 25 C C31 6IB . . . G 7 98.615 59.522 80.243 1 111.2 ? C31 6IB 402 R 1 HETATM 26 C C32 6IB . . . G 7 98.916 64.567 86.216 1 111.2 ? C32 6IB 402 R 1 HETATM 27 C C33 6IB . . . G 7 100.324 66.108 79.797 1 111.2 ? C33 6IB 402 R 1 HETATM 28 C C34 6IB . . . G 7 98.73 71.549 84.217 1 111.2 ? C34 6IB 402 R 1 HETATM 29 C C35 6IB . . . G 7 96.939 65.244 84.269 1 111.2 ? C35 6IB 402 R 1 HETATM 30 C C36 6IB . . . G 7 105.318 68.117 84.395 1 111.2 ? C36 6IB 402 R 1 HETATM 31 C C37 6IB . . . G 7 98.888 57.445 81.563 1 111.2 ? C37 6IB 402 R 1 HETATM 32 C C38 6IB . . . G 7 97.035 62.953 85.969 1 111.2 ? C38 6IB 402 R 1 HETATM 33 N N4 6IB . . . G 7 98.182 70.867 85.398 1 111.2 ? N4 6IB 402 R 1 HETATM 34 N N5 6IB . . . G 7 99.574 58.558 80.867 1 111.2 ? N5 6IB 402 R 1 HETATM 35 N N6 6IB . . . G 7 98.13 63.444 86.818 1 111.2 ? N6 6IB 402 R 1 HETATM 36 O O1 6IB . . . G 7 100.358 66.124 81.212 1 111.2 ? O1 6IB 402 R 1 HETATM 37 O O2 6IB . . . G 7 96.384 65.035 82.981 1 111.2 ? O2 6IB 402 R 1 HETATM 38 O O3 6IB . . . G 7 104.169 67.701 83.687 1 111.2 ? O3 6IB 402 R 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #