data_7VW6 # _model_server_result.job_id JhidN88ZlVjr2TeCdKvlbQ _model_server_result.datetime_utc '2025-02-05 18:07:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1603}' # _entry.id 7VW6 # _exptl.entry_id 7VW6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VW6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 102 A CYS 102 1_555 E FE2 FES . A FES 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A SG CYS 115 A CYS 115 1_555 E FE2 FES . A FES 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A SG CYS 118 A CYS 118 1_555 E FE1 FES . A FES 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 A SG CYS 132 A CYS 132 1_555 E FE1 FES . A FES 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A SG CYS 213 A CYS 213 1_555 C FE4 SF4 . A SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 A SG CYS 216 A CYS 216 1_555 C FE2 SF4 . A SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc7 A SG CYS 219 A CYS 219 1_555 C FE1 SF4 . A SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 A SG CYS 223 A CYS 223 1_555 D FE4 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 A SG CYS 256 A CYS 256 1_555 D FE1 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc10 A SG CYS 259 A CYS 259 1_555 D FE2 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 A SG CYS 262 A CYS 262 1_555 D FE3 SF4 . A SF4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc12 A SG CYS 266 A CYS 266 1_555 C FE3 SF4 . A SF4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc13 A SG CYS 295 A CYS 295 1_555 F FE3 SF4 . A SF4 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc14 A SG CYS 298 A CYS 298 1_555 F FE2 SF4 . A SF4 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc15 A SG CYS 302 A CYS 302 1_555 F FE4 SF4 . A SF4 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc16 A SG CYS 329 A CYS 329 1_555 F FE1 SF4 . A SF4 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc17 A SG CYS 436 A CYS 436 1_555 I W W . A W 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc18 G S12 MGD . A MGD 1005 1_555 I W W . A W 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc19 G S13 MGD . A MGD 1005 1_555 I W W . A W 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc20 H S12 MGD . A MGD 1006 1_555 I W W . A W 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc21 H S13 MGD . A MGD 1006 1_555 I W W . A W 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc22 B SG CYS 113 B CYS 1134 1_555 K FE2 FES . B FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc23 B SG CYS 118 B CYS 1139 1_555 K FE2 FES . B FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc24 B SG CYS 146 B CYS 1167 1_555 K FE1 FES . B FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc25 B SG CYS 150 B CYS 1171 1_555 K FE1 FES . B FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc26 B SG CYS 502 B CYS 1523 1_555 L FE1 SF4 . B SF4 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc27 B SG CYS 505 B CYS 1526 1_555 L FE2 SF4 . B SF4 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc28 B SG CYS 508 B CYS 1529 1_555 L FE3 SF4 . B SF4 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc29 B SG CYS 542 B CYS 1563 1_555 L FE4 SF4 . B SF4 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 87 n n N1 C10 FMN doub 88 n n C2 O2 FMN doub 89 n n C2 N3 FMN sing 90 n n N3 C4 FMN sing 91 n n N3 HN3 FMN sing 92 n n C4 O4 FMN doub 93 n n C4 C4A FMN sing 94 n n C4A N5 FMN doub 95 n n C4A C10 FMN sing 96 n n N5 C5A FMN sing 97 n n C5A C6 FMN doub 98 n y C5A C9A FMN sing 99 n y C6 C7 FMN sing 100 n y C6 H6 FMN sing 101 n n C7 C7M FMN sing 102 n n C7 C8 FMN doub 103 n y C7M HM71 FMN sing 104 n n C7M HM72 FMN sing 105 n n C7M HM73 FMN sing 106 n n C8 C8M FMN sing 107 n n C8 C9 FMN sing 108 n y C8M HM81 FMN sing 109 n n C8M HM82 FMN sing 110 n n C8M HM83 FMN sing 111 n n C9 C9A FMN doub 112 n y C9 H9 FMN sing 113 n n C9A N10 FMN sing 114 n n N10 C10 FMN sing 115 n n N10 C1' FMN sing 116 n n C1' C2' FMN sing 117 n n C1' "H1'1" FMN sing 118 n n C1' "H1'2" FMN sing 119 n n C2' O2' FMN sing 120 n n C2' C3' FMN sing 121 n n C2' H2' FMN sing 122 n n O2' HO2' FMN sing 123 n n C3' O3' FMN sing 124 n n C3' C4' FMN sing 125 n n C3' H3' FMN sing 126 n n O3' HO3' FMN sing 127 n n C4' O4' FMN sing 128 n n C4' C5' FMN sing 129 n n C4' H4' FMN sing 130 n n O4' HO4' FMN sing 131 n n C5' O5' FMN sing 132 n n C5' "H5'1" FMN sing 133 n n C5' "H5'2" FMN sing 134 n n O5' P FMN sing 135 n n P O1P FMN doub 136 n n P O2P FMN sing 137 n n P O3P FMN sing 138 n n O2P HOP2 FMN sing 139 n n O3P HOP3 FMN sing 140 n n # _atom_sites.entry_id 7VW6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SF4 A 1 1001 1002 SF4 SF4 . D 3 SF4 A 1 1002 1011 SF4 SF4 . E 4 FES A 1 1003 1012 FES FES . F 3 SF4 A 1 1004 1013 SF4 SF4 . G 5 MGD A 1 1005 1014 MGD MGD . H 5 MGD A 1 1006 1015 MGD MGD . I 6 W A 1 1007 1016 W W . J 7 UNX A 1 1008 1017 UNX UNX . K 4 FES B 1 1601 1601 FES FES . L 3 SF4 B 1 1602 1602 SF4 SF4 . M 8 FMN B 1 1603 1603 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . M 8 76.764 103.32 100.587 1 19.65 ? N1 FMN 1603 B 1 HETATM 2 C C2 FMN . . . M 8 75.838 104.056 101.233 1 19.65 ? C2 FMN 1603 B 1 HETATM 3 O O2 FMN . . . M 8 75.048 103.53 102.013 1 19.65 ? O2 FMN 1603 B 1 HETATM 4 N N3 FMN . . . M 8 75.731 105.395 101.053 1 19.65 ? N3 FMN 1603 B 1 HETATM 5 C C4 FMN . . . M 8 76.56 106.08 100.201 1 19.65 ? C4 FMN 1603 B 1 HETATM 6 O O4 FMN . . . M 8 76.431 107.285 100.069 1 19.65 ? O4 FMN 1603 B 1 HETATM 7 C C4A FMN . . . M 8 77.547 105.352 99.516 1 19.65 ? C4A FMN 1603 B 1 HETATM 8 N N5 FMN . . . M 8 78.353 105.991 98.708 1 19.65 ? N5 FMN 1603 B 1 HETATM 9 C C5A FMN . . . M 8 79.31 105.256 98.061 1 19.65 ? C5A FMN 1603 B 1 HETATM 10 C C6 FMN . . . M 8 80.194 105.926 97.198 1 19.65 ? C6 FMN 1603 B 1 HETATM 11 C C7 FMN . . . M 8 81.183 105.255 96.52 1 19.65 ? C7 FMN 1603 B 1 HETATM 12 C C7M FMN . . . M 8 82.115 106.008 95.605 1 19.65 ? C7M FMN 1603 B 1 HETATM 13 C C8 FMN . . . M 8 81.312 103.854 96.685 1 19.65 ? C8 FMN 1603 B 1 HETATM 14 C C8M FMN . . . M 8 82.383 103.093 95.947 1 19.65 ? C8M FMN 1603 B 1 HETATM 15 C C9 FMN . . . M 8 80.448 103.184 97.526 1 19.65 ? C9 FMN 1603 B 1 HETATM 16 C C9A FMN . . . M 8 79.44 103.862 98.23 1 19.65 ? C9A FMN 1603 B 1 HETATM 17 N N10 FMN . . . M 8 78.552 103.22 99.091 1 19.65 ? N10 FMN 1603 B 1 HETATM 18 C C10 FMN . . . M 8 77.586 103.937 99.767 1 19.65 ? C10 FMN 1603 B 1 HETATM 19 C C1' FMN . . . M 8 78.657 101.768 99.314 1 19.65 ? C1' FMN 1603 B 1 HETATM 20 C C2' FMN . . . M 8 79.496 101.454 100.539 1 19.65 ? C2' FMN 1603 B 1 HETATM 21 O O2' FMN . . . M 8 80.88 101.448 100.211 1 19.65 ? O2' FMN 1603 B 1 HETATM 22 C C3' FMN . . . M 8 79.081 100.127 101.178 1 19.65 ? C3' FMN 1603 B 1 HETATM 23 O O3' FMN . . . M 8 79.197 99.085 100.22 1 19.65 ? O3' FMN 1603 B 1 HETATM 24 C C4' FMN . . . M 8 77.646 100.151 101.707 1 19.65 ? C4' FMN 1603 B 1 HETATM 25 O O4' FMN . . . M 8 77.514 101.155 102.715 1 19.65 ? O4' FMN 1603 B 1 HETATM 26 C C5' FMN . . . M 8 77.204 98.82 102.263 1 19.65 ? C5' FMN 1603 B 1 HETATM 27 O O5' FMN . . . M 8 75.762 98.89 102.412 1 19.65 ? O5' FMN 1603 B 1 HETATM 28 P P FMN . . . M 8 74.954 97.553 102.767 1 19.65 ? P FMN 1603 B 1 HETATM 29 O O1P FMN . . . M 8 75.25 96.581 101.647 1 19.65 ? O1P FMN 1603 B 1 HETATM 30 O O2P FMN . . . M 8 73.501 97.963 102.834 1 19.65 ? O2P FMN 1603 B 1 HETATM 31 O O3P FMN . . . M 8 75.501 97.096 104.095 1 19.65 ? O3P FMN 1603 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 94 _model_server_stats.query_time_ms 1223 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 31 #