data_7VWB # _model_server_result.job_id dDTGAa9QUDtNTIZzY_TPpg _model_server_result.datetime_utc '2024-11-22 10:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7VWB # _exptl.entry_id 7VWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.13 _cell.angle_gamma 90 _cell.entry_id 7VWB _cell.length_a 37.69 _cell.length_b 60.39 _cell.length_c 82.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 NDG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NDG 1 C 1 NDG AaA 201 DRG 2 n C GAL 2 C 2 GAL AaA 201 DRG 2 n D NDG 1 D 1 NDG BaB 201 DRG 2 n D GAL 2 D 2 GAL BaB 201 DRG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 C O4 NDG . C NDG 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale2 D O4 NDG . D NDG 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7VWB _atom_sites.fract_transf_matrix[1][1] 0.026532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 301 301 EDO EDO . F 4 HOH A 1 401 106 HOH HOH . F 4 HOH A 2 402 131 HOH HOH . F 4 HOH A 3 403 82 HOH HOH . F 4 HOH A 4 404 104 HOH HOH . F 4 HOH A 5 405 122 HOH HOH . F 4 HOH A 6 406 3 HOH HOH . F 4 HOH A 7 407 4 HOH HOH . F 4 HOH A 8 408 22 HOH HOH . F 4 HOH A 9 409 110 HOH HOH . F 4 HOH A 10 410 52 HOH HOH . F 4 HOH A 11 411 42 HOH HOH . F 4 HOH A 12 412 28 HOH HOH . F 4 HOH A 13 413 5 HOH HOH . F 4 HOH A 14 414 68 HOH HOH . F 4 HOH A 15 415 31 HOH HOH . F 4 HOH A 16 416 3 HOH HOH . F 4 HOH A 17 417 72 HOH HOH . F 4 HOH A 18 418 23 HOH HOH . F 4 HOH A 19 419 99 HOH HOH . F 4 HOH A 20 420 35 HOH HOH . F 4 HOH A 21 421 157 HOH HOH . F 4 HOH A 22 422 100 HOH HOH . F 4 HOH A 23 423 116 HOH HOH . F 4 HOH A 24 424 30 HOH HOH . F 4 HOH A 25 425 32 HOH HOH . F 4 HOH A 26 426 160 HOH HOH . F 4 HOH A 27 427 36 HOH HOH . F 4 HOH A 28 428 87 HOH HOH . F 4 HOH A 29 429 25 HOH HOH . F 4 HOH A 30 430 53 HOH HOH . F 4 HOH A 31 431 4 HOH HOH . F 4 HOH A 32 432 29 HOH HOH . F 4 HOH A 33 433 88 HOH HOH . F 4 HOH A 34 434 16 HOH HOH . F 4 HOH A 35 435 33 HOH HOH . F 4 HOH A 36 436 143 HOH HOH . F 4 HOH A 37 437 88 HOH HOH . F 4 HOH A 38 438 2 HOH HOH . F 4 HOH A 39 439 49 HOH HOH . F 4 HOH A 40 440 40 HOH HOH . F 4 HOH A 41 441 114 HOH HOH . F 4 HOH A 42 442 7 HOH HOH . F 4 HOH A 43 443 101 HOH HOH . F 4 HOH A 44 444 20 HOH HOH . F 4 HOH A 45 445 2 HOH HOH . F 4 HOH A 46 446 67 HOH HOH . F 4 HOH A 47 447 66 HOH HOH . F 4 HOH A 48 448 69 HOH HOH . F 4 HOH A 49 449 19 HOH HOH . F 4 HOH A 50 450 13 HOH HOH . F 4 HOH A 51 451 113 HOH HOH . F 4 HOH A 52 452 129 HOH HOH . F 4 HOH A 53 453 23 HOH HOH . F 4 HOH A 54 454 24 HOH HOH . F 4 HOH A 55 455 30 HOH HOH . F 4 HOH A 56 456 159 HOH HOH . F 4 HOH A 57 457 110 HOH HOH . F 4 HOH A 58 458 77 HOH HOH . F 4 HOH A 59 459 115 HOH HOH . F 4 HOH A 60 460 32 HOH HOH . F 4 HOH A 61 461 108 HOH HOH . F 4 HOH A 62 462 10 HOH HOH . F 4 HOH A 63 463 41 HOH HOH . F 4 HOH A 64 464 5 HOH HOH . F 4 HOH A 65 465 86 HOH HOH . F 4 HOH A 66 466 124 HOH HOH . F 4 HOH A 67 467 92 HOH HOH . F 4 HOH A 68 468 16 HOH HOH . F 4 HOH A 69 469 9 HOH HOH . F 4 HOH A 70 470 101 HOH HOH . F 4 HOH A 71 471 71 HOH HOH . F 4 HOH A 72 472 75 HOH HOH . F 4 HOH A 73 473 78 HOH HOH . F 4 HOH A 74 474 145 HOH HOH . F 4 HOH A 75 475 18 HOH HOH . F 4 HOH A 76 476 132 HOH HOH . F 4 HOH A 77 477 54 HOH HOH . F 4 HOH A 78 478 65 HOH HOH . F 4 HOH A 79 479 111 HOH HOH . F 4 HOH A 80 480 12 HOH HOH . F 4 HOH A 81 481 136 HOH HOH . F 4 HOH A 82 482 7 HOH HOH . F 4 HOH A 83 483 14 HOH HOH . F 4 HOH A 84 484 34 HOH HOH . F 4 HOH A 85 485 80 HOH HOH . F 4 HOH A 86 486 41 HOH HOH . F 4 HOH A 87 487 85 HOH HOH . F 4 HOH A 88 488 83 HOH HOH . F 4 HOH A 89 489 75 HOH HOH . F 4 HOH A 90 490 68 HOH HOH . F 4 HOH A 91 491 97 HOH HOH . F 4 HOH A 92 492 40 HOH HOH . F 4 HOH A 93 493 60 HOH HOH . F 4 HOH A 94 494 44 HOH HOH . F 4 HOH A 95 495 74 HOH HOH . F 4 HOH A 96 496 26 HOH HOH . F 4 HOH A 97 497 134 HOH HOH . F 4 HOH A 98 498 60 HOH HOH . F 4 HOH A 99 499 95 HOH HOH . F 4 HOH A 100 500 121 HOH HOH . F 4 HOH A 101 501 117 HOH HOH . F 4 HOH A 102 502 97 HOH HOH . F 4 HOH A 103 503 152 HOH HOH . F 4 HOH A 104 504 79 HOH HOH . F 4 HOH A 105 505 120 HOH HOH . F 4 HOH A 106 506 81 HOH HOH . F 4 HOH A 107 507 91 HOH HOH . F 4 HOH A 108 508 116 HOH HOH . F 4 HOH A 109 509 125 HOH HOH . F 4 HOH A 110 510 142 HOH HOH . F 4 HOH A 111 511 113 HOH HOH . F 4 HOH A 112 512 122 HOH HOH . F 4 HOH A 113 513 58 HOH HOH . F 4 HOH A 114 514 61 HOH HOH . F 4 HOH A 115 515 112 HOH HOH . G 4 HOH B 1 201 71 HOH HOH . G 4 HOH B 2 202 81 HOH HOH . G 4 HOH B 3 203 63 HOH HOH . G 4 HOH B 4 204 63 HOH HOH . G 4 HOH B 5 205 102 HOH HOH . G 4 HOH B 6 206 82 HOH HOH . G 4 HOH B 7 207 25 HOH HOH . G 4 HOH B 8 208 100 HOH HOH . G 4 HOH B 9 209 57 HOH HOH . G 4 HOH B 10 210 112 HOH HOH . G 4 HOH B 11 211 55 HOH HOH . G 4 HOH B 12 212 90 HOH HOH . G 4 HOH B 13 213 72 HOH HOH . G 4 HOH B 14 214 1 HOH HOH . G 4 HOH B 15 215 61 HOH HOH . G 4 HOH B 16 216 105 HOH HOH . G 4 HOH B 17 217 31 HOH HOH . G 4 HOH B 18 218 21 HOH HOH . G 4 HOH B 19 219 107 HOH HOH . G 4 HOH B 20 220 73 HOH HOH . G 4 HOH B 21 221 158 HOH HOH . G 4 HOH B 22 222 137 HOH HOH . G 4 HOH B 23 223 13 HOH HOH . G 4 HOH B 24 224 90 HOH HOH . G 4 HOH B 25 225 29 HOH HOH . G 4 HOH B 26 226 89 HOH HOH . G 4 HOH B 27 227 50 HOH HOH . G 4 HOH B 28 228 56 HOH HOH . G 4 HOH B 29 229 45 HOH HOH . G 4 HOH B 30 230 162 HOH HOH . G 4 HOH B 31 231 105 HOH HOH . G 4 HOH B 32 232 1 HOH HOH . G 4 HOH B 33 233 130 HOH HOH . G 4 HOH B 34 234 15 HOH HOH . G 4 HOH B 35 235 12 HOH HOH . G 4 HOH B 36 236 161 HOH HOH . G 4 HOH B 37 237 9 HOH HOH . G 4 HOH B 38 238 69 HOH HOH . G 4 HOH B 39 239 6 HOH HOH . G 4 HOH B 40 240 27 HOH HOH . G 4 HOH B 41 241 43 HOH HOH . G 4 HOH B 42 242 47 HOH HOH . G 4 HOH B 43 243 17 HOH HOH . G 4 HOH B 44 244 89 HOH HOH . G 4 HOH B 45 245 66 HOH HOH . G 4 HOH B 46 246 77 HOH HOH . G 4 HOH B 47 247 156 HOH HOH . G 4 HOH B 48 248 95 HOH HOH . G 4 HOH B 49 249 20 HOH HOH . G 4 HOH B 50 250 42 HOH HOH . G 4 HOH B 51 251 44 HOH HOH . G 4 HOH B 52 252 57 HOH HOH . G 4 HOH B 53 253 123 HOH HOH . G 4 HOH B 54 254 14 HOH HOH . G 4 HOH B 55 255 149 HOH HOH . G 4 HOH B 56 256 133 HOH HOH . G 4 HOH B 57 257 18 HOH HOH . G 4 HOH B 58 258 43 HOH HOH . G 4 HOH B 59 259 48 HOH HOH . G 4 HOH B 60 260 70 HOH HOH . G 4 HOH B 61 261 39 HOH HOH . G 4 HOH B 62 262 51 HOH HOH . G 4 HOH B 63 263 155 HOH HOH . G 4 HOH B 64 264 78 HOH HOH . G 4 HOH B 65 265 70 HOH HOH . G 4 HOH B 66 266 141 HOH HOH . G 4 HOH B 67 267 37 HOH HOH . G 4 HOH B 68 268 36 HOH HOH . G 4 HOH B 69 269 22 HOH HOH . G 4 HOH B 70 270 103 HOH HOH . G 4 HOH B 71 271 55 HOH HOH . G 4 HOH B 72 272 10 HOH HOH . G 4 HOH B 73 273 98 HOH HOH . G 4 HOH B 74 274 127 HOH HOH . G 4 HOH B 75 275 28 HOH HOH . G 4 HOH B 76 276 144 HOH HOH . G 4 HOH B 77 277 24 HOH HOH . G 4 HOH B 78 278 120 HOH HOH . G 4 HOH B 79 279 106 HOH HOH . G 4 HOH B 80 280 53 HOH HOH . G 4 HOH B 81 281 11 HOH HOH . G 4 HOH B 82 282 76 HOH HOH . G 4 HOH B 83 283 37 HOH HOH . G 4 HOH B 84 284 56 HOH HOH . G 4 HOH B 85 285 59 HOH HOH . G 4 HOH B 86 286 147 HOH HOH . G 4 HOH B 87 287 67 HOH HOH . G 4 HOH B 88 288 62 HOH HOH . G 4 HOH B 89 289 27 HOH HOH . G 4 HOH B 90 290 46 HOH HOH . G 4 HOH B 91 291 15 HOH HOH . G 4 HOH B 92 292 94 HOH HOH . G 4 HOH B 93 293 47 HOH HOH . G 4 HOH B 94 294 119 HOH HOH . G 4 HOH B 95 295 87 HOH HOH . G 4 HOH B 96 296 74 HOH HOH . G 4 HOH B 97 297 64 HOH HOH . G 4 HOH B 98 298 8 HOH HOH . G 4 HOH B 99 299 59 HOH HOH . G 4 HOH B 100 300 26 HOH HOH . G 4 HOH B 101 301 39 HOH HOH . G 4 HOH B 102 302 19 HOH HOH . G 4 HOH B 103 303 64 HOH HOH . G 4 HOH B 104 304 48 HOH HOH . G 4 HOH B 105 305 58 HOH HOH . G 4 HOH B 106 306 123 HOH HOH . G 4 HOH B 107 307 6 HOH HOH . G 4 HOH B 108 308 94 HOH HOH . G 4 HOH B 109 309 65 HOH HOH . G 4 HOH B 110 310 76 HOH HOH . G 4 HOH B 111 311 35 HOH HOH . G 4 HOH B 112 312 150 HOH HOH . G 4 HOH B 113 313 34 HOH HOH . G 4 HOH B 114 314 114 HOH HOH . G 4 HOH B 115 315 119 HOH HOH . G 4 HOH B 116 316 153 HOH HOH . G 4 HOH B 117 317 73 HOH HOH . G 4 HOH B 118 318 146 HOH HOH . G 4 HOH B 119 319 108 HOH HOH . G 4 HOH B 120 320 151 HOH HOH . G 4 HOH B 121 321 51 HOH HOH . G 4 HOH B 122 322 118 HOH HOH . G 4 HOH B 123 323 107 HOH HOH . G 4 HOH B 124 324 84 HOH HOH . G 4 HOH B 125 325 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 9.09 16.985 31.513 1 19.59 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . E 3 7.885 17.451 30.959 1 19.42 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . E 3 9.047 15.565 31.974 1 21.07 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . E 3 8.325 14.705 31.094 1 22.51 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #