data_7VWE # _model_server_result.job_id lpgh9t_8qp1fe0fYts-dng _model_server_result.datetime_utc '2024-11-12 20:51:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7VWE # _exptl.entry_id 7VWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.055 _cell.angle_gamma 90 _cell.entry_id 7VWE _cell.length_a 39.123 _cell.length_b 92.303 _cell.length_c 96.088 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 135 n n C5 C4 B7G sing 136 n n C5 C6 B7G sing 137 n n C5 H5 B7G sing 138 n n O5 C1 B7G sing 139 n n C1 C2 B7G sing 140 n n C1 O1 B7G sing 141 n n C1 H1 B7G sing 142 n n C2 C3 B7G sing 143 n n C2 O2 B7G sing 144 n n C2 H2 B7G sing 145 n n C3 C4 B7G sing 146 n n C3 O3 B7G sing 147 n n C3 H3 B7G sing 148 n n C4 O4 B7G sing 149 n n C4 H4 B7G sing 150 n n C6 O6 B7G sing 151 n n C6 H61 B7G sing 152 n n C6 H62 B7G sing 153 n n O1 C7 B7G sing 154 n n C7 C8 B7G sing 155 n n C7 H71 B7G sing 156 n n C7 H72 B7G sing 157 n n C8 C9 B7G sing 158 n n C8 H81 B7G sing 159 n n C8 H82 B7G sing 160 n n C9 C10 B7G sing 161 n n C9 H91 B7G sing 162 n n C9 H92 B7G sing 163 n n C10 C11 B7G sing 164 n n C10 H101 B7G sing 165 n n C10 H102 B7G sing 166 n n C11 C12 B7G sing 167 n n C11 H111 B7G sing 168 n n C11 H112 B7G sing 169 n n C12 C13 B7G sing 170 n n C12 H121 B7G sing 171 n n C12 H122 B7G sing 172 n n O2 HO2 B7G sing 173 n n O3 HO3 B7G sing 174 n n O4 HO4 B7G sing 175 n n O6 HO6 B7G sing 176 n n C13 H131 B7G sing 177 n n C13 H132 B7G sing 178 n n C13 H133 B7G sing 179 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7VWE _atom_sites.fract_transf_matrix[1][1] 0.02556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003617 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 501 920 B7G B7G . D 3 81O A 1 502 922 81O JJC . E 2 B7G B 1 501 921 B7G B7G . F 3 81O B 1 502 923 81O JJC . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 3 HOH HOH . G 4 HOH A 3 603 4 HOH HOH . G 4 HOH A 4 604 2 HOH HOH . H 4 HOH B 1 601 5 HOH HOH . H 4 HOH B 2 602 9 HOH HOH . H 4 HOH B 3 603 6 HOH HOH . H 4 HOH B 4 604 7 HOH HOH . H 4 HOH B 5 605 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . E 2 22.494 -18.04 22.859 1 73.43 ? C5 B7G 501 B 1 HETATM 2 O O5 B7G . . . E 2 21.908 -18.959 21.861 1 77.04 ? O5 B7G 501 B 1 HETATM 3 C C1 B7G . . . E 2 22.655 -20.23 21.775 1 67.2 ? C1 B7G 501 B 1 HETATM 4 C C2 B7G . . . E 2 24.129 -19.975 21.517 1 67.75 ? C2 B7G 501 B 1 HETATM 5 C C3 B7G . . . E 2 24.689 -19.142 22.6 1 75.3 ? C3 B7G 501 B 1 HETATM 6 C C4 B7G . . . E 2 23.989 -17.844 22.656 1 77.31 ? C4 B7G 501 B 1 HETATM 7 C C6 B7G . . . E 2 21.824 -16.711 22.782 1 64.55 ? C6 B7G 501 B 1 HETATM 8 O O1 B7G . . . E 2 22.112 -21.027 20.786 1 59.35 ? O1 B7G 501 B 1 HETATM 9 C C7 B7G . . . E 2 20.919 -21.666 21.182 1 52.34 ? C7 B7G 501 B 1 HETATM 10 C C8 B7G . . . E 2 20.738 -22.953 20.406 1 44.49 ? C8 B7G 501 B 1 HETATM 11 C C9 B7G . . . E 2 19.518 -22.838 19.518 1 41.69 ? C9 B7G 501 B 1 HETATM 12 C C10 B7G . . . E 2 18.318 -23.482 20.178 1 37.18 ? C10 B7G 501 B 1 HETATM 13 C C11 B7G . . . E 2 17.075 -22.692 19.83 1 38.24 ? C11 B7G 501 B 1 HETATM 14 C C12 B7G . . . E 2 15.876 -23.609 19.705 1 36.31 ? C12 B7G 501 B 1 HETATM 15 O O2 B7G . . . E 2 24.838 -21.228 21.44 1 63.39 ? O2 B7G 501 B 1 HETATM 16 O O3 B7G . . . E 2 26.12 -18.913 22.387 1 71.4 ? O3 B7G 501 B 1 HETATM 17 O O4 B7G . . . E 2 24.518 -17.069 23.75 1 74.06 ? O4 B7G 501 B 1 HETATM 18 O O6 B7G . . . E 2 20.686 -16.782 21.95 1 56.78 ? O6 B7G 501 B 1 HETATM 19 C C13 B7G . . . E 2 14.751 -22.883 18.997 1 42.06 ? C13 B7G 501 B 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #