data_7VWF # _model_server_result.job_id fecuEAnyKV_0h-v4uIHfWA _model_server_result.datetime_utc '2025-01-12 09:42:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7VWF # _exptl.entry_id 7VWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.325 _cell.angle_gamma 90 _cell.entry_id 7VWF _cell.length_a 39.557 _cell.length_b 94.248 _cell.length_c 96.308 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C24 H27 F4 N O4' _chem_comp.formula_weight 469.469 _chem_comp.id K55 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-2-{4-butoxy-3-[(2-fluoro-4-trifluoromethylbenzoylamino)methyl]benzyl} butyric acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C1 K55 sing 218 n n O26 C1 K55 doub 219 n n C1 C2 K55 sing 220 n n C2 C3 K55 sing 221 n n C2 C5 K55 sing 222 n n C3 C4 K55 sing 223 n n C5 C6 K55 sing 224 n n C6 C7 K55 doub 225 n y C6 C11 K55 sing 226 n y C7 C8 K55 sing 227 n y C8 C9 K55 doub 228 n y C8 C12 K55 sing 229 n n C9 C10 K55 sing 230 n y C9 O33 K55 sing 231 n n C10 C11 K55 doub 232 n y O33 C21 K55 sing 233 n n C21 C22 K55 sing 234 n n C22 C23 K55 sing 235 n n C23 C24 K55 sing 236 n n C12 N27 K55 sing 237 n n N27 C13 K55 sing 238 n n C13 O28 K55 doub 239 n n C13 C14 K55 sing 240 n n C14 C15 K55 doub 241 n y C14 C19 K55 sing 242 n y C15 C16 K55 sing 243 n y C15 F29 K55 sing 244 n n C16 C17 K55 doub 245 n y C17 C18 K55 sing 246 n y C17 C20 K55 sing 247 n n C18 C19 K55 doub 248 n y C20 F30 K55 sing 249 n n C20 F31 K55 sing 250 n n C20 F32 K55 sing 251 n n O25 HO25 K55 sing 252 n n C2 H2 K55 sing 253 n n C3 H3 K55 sing 254 n n C3 H3A K55 sing 255 n n C4 H4 K55 sing 256 n n C4 H4A K55 sing 257 n n C4 H4B K55 sing 258 n n C5 H5 K55 sing 259 n n C5 H5A K55 sing 260 n n C7 H7 K55 sing 261 n n C10 H10 K55 sing 262 n n C11 H11 K55 sing 263 n n C21 H21 K55 sing 264 n n C21 H21A K55 sing 265 n n C22 H22 K55 sing 266 n n C22 H22A K55 sing 267 n n C23 H23 K55 sing 268 n n C23 H23A K55 sing 269 n n C24 H24 K55 sing 270 n n C24 H24A K55 sing 271 n n C24 H24B K55 sing 272 n n C12 H12 K55 sing 273 n n C12 H12A K55 sing 274 n n N27 HN27 K55 sing 275 n n C16 H16 K55 sing 276 n n C18 H18 K55 sing 277 n n C19 H19 K55 sing 278 n n # _atom_sites.entry_id 7VWF _atom_sites.fract_transf_matrix[1][1] 0.02528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 501 921 B7G B7G . D 3 K55 A 1 502 922 K55 K55 . E 2 B7G B 1 501 920 B7G B7G . F 3 K55 B 1 502 923 K55 K55 . G 4 HOH A 1 601 212 HOH HOH . G 4 HOH A 2 602 156 HOH HOH . G 4 HOH A 3 603 130 HOH HOH . G 4 HOH A 4 604 54 HOH HOH . G 4 HOH A 5 605 211 HOH HOH . G 4 HOH A 6 606 61 HOH HOH . G 4 HOH A 7 607 168 HOH HOH . G 4 HOH A 8 608 122 HOH HOH . G 4 HOH A 9 609 118 HOH HOH . G 4 HOH A 10 610 155 HOH HOH . G 4 HOH A 11 611 152 HOH HOH . G 4 HOH A 12 612 185 HOH HOH . G 4 HOH A 13 613 18 HOH HOH . G 4 HOH A 14 614 8 HOH HOH . G 4 HOH A 15 615 81 HOH HOH . G 4 HOH A 16 616 7 HOH HOH . G 4 HOH A 17 617 55 HOH HOH . G 4 HOH A 18 618 139 HOH HOH . G 4 HOH A 19 619 64 HOH HOH . G 4 HOH A 20 620 123 HOH HOH . G 4 HOH A 21 621 145 HOH HOH . G 4 HOH A 22 622 90 HOH HOH . G 4 HOH A 23 623 191 HOH HOH . G 4 HOH A 24 624 127 HOH HOH . G 4 HOH A 25 625 49 HOH HOH . G 4 HOH A 26 626 109 HOH HOH . G 4 HOH A 27 627 66 HOH HOH . G 4 HOH A 28 628 128 HOH HOH . G 4 HOH A 29 629 43 HOH HOH . G 4 HOH A 30 630 178 HOH HOH . G 4 HOH A 31 631 45 HOH HOH . G 4 HOH A 32 632 194 HOH HOH . G 4 HOH A 33 633 40 HOH HOH . G 4 HOH A 34 634 91 HOH HOH . G 4 HOH A 35 635 112 HOH HOH . G 4 HOH A 36 636 116 HOH HOH . G 4 HOH A 37 637 15 HOH HOH . G 4 HOH A 38 638 63 HOH HOH . G 4 HOH A 39 639 135 HOH HOH . G 4 HOH A 40 640 4 HOH HOH . G 4 HOH A 41 641 96 HOH HOH . G 4 HOH A 42 642 65 HOH HOH . G 4 HOH A 43 643 202 HOH HOH . G 4 HOH A 44 644 204 HOH HOH . G 4 HOH A 45 645 193 HOH HOH . G 4 HOH A 46 646 114 HOH HOH . G 4 HOH A 47 647 80 HOH HOH . G 4 HOH A 48 648 71 HOH HOH . G 4 HOH A 49 649 165 HOH HOH . G 4 HOH A 50 650 197 HOH HOH . G 4 HOH A 51 651 42 HOH HOH . G 4 HOH A 52 652 86 HOH HOH . G 4 HOH A 53 653 50 HOH HOH . G 4 HOH A 54 654 70 HOH HOH . G 4 HOH A 55 655 94 HOH HOH . G 4 HOH A 56 656 151 HOH HOH . G 4 HOH A 57 657 47 HOH HOH . G 4 HOH A 58 658 162 HOH HOH . G 4 HOH A 59 659 17 HOH HOH . G 4 HOH A 60 660 19 HOH HOH . G 4 HOH A 61 661 133 HOH HOH . G 4 HOH A 62 662 180 HOH HOH . G 4 HOH A 63 663 147 HOH HOH . G 4 HOH A 64 664 149 HOH HOH . G 4 HOH A 65 665 144 HOH HOH . G 4 HOH A 66 666 161 HOH HOH . G 4 HOH A 67 667 205 HOH HOH . G 4 HOH A 68 668 77 HOH HOH . G 4 HOH A 69 669 21 HOH HOH . G 4 HOH A 70 670 163 HOH HOH . G 4 HOH A 71 671 134 HOH HOH . G 4 HOH A 72 672 143 HOH HOH . G 4 HOH A 73 673 158 HOH HOH . G 4 HOH A 74 674 111 HOH HOH . G 4 HOH A 75 675 154 HOH HOH . G 4 HOH A 76 676 110 HOH HOH . G 4 HOH A 77 677 188 HOH HOH . G 4 HOH A 78 678 206 HOH HOH . G 4 HOH A 79 679 157 HOH HOH . G 4 HOH A 80 680 131 HOH HOH . G 4 HOH A 81 681 192 HOH HOH . G 4 HOH A 82 682 95 HOH HOH . G 4 HOH A 83 683 12 HOH HOH . G 4 HOH A 84 684 68 HOH HOH . G 4 HOH A 85 685 176 HOH HOH . G 4 HOH A 86 686 167 HOH HOH . G 4 HOH A 87 687 115 HOH HOH . H 4 HOH B 1 601 209 HOH HOH . H 4 HOH B 2 602 141 HOH HOH . H 4 HOH B 3 603 214 HOH HOH . H 4 HOH B 4 604 89 HOH HOH . H 4 HOH B 5 605 198 HOH HOH . H 4 HOH B 6 606 213 HOH HOH . H 4 HOH B 7 607 34 HOH HOH . H 4 HOH B 8 608 76 HOH HOH . H 4 HOH B 9 609 166 HOH HOH . H 4 HOH B 10 610 129 HOH HOH . H 4 HOH B 11 611 44 HOH HOH . H 4 HOH B 12 612 30 HOH HOH . H 4 HOH B 13 613 56 HOH HOH . H 4 HOH B 14 614 108 HOH HOH . H 4 HOH B 15 615 24 HOH HOH . H 4 HOH B 16 616 59 HOH HOH . H 4 HOH B 17 617 83 HOH HOH . H 4 HOH B 18 618 200 HOH HOH . H 4 HOH B 19 619 16 HOH HOH . H 4 HOH B 20 620 2 HOH HOH . H 4 HOH B 21 621 92 HOH HOH . H 4 HOH B 22 622 146 HOH HOH . H 4 HOH B 23 623 216 HOH HOH . H 4 HOH B 24 624 60 HOH HOH . H 4 HOH B 25 625 199 HOH HOH . H 4 HOH B 26 626 22 HOH HOH . H 4 HOH B 27 627 142 HOH HOH . H 4 HOH B 28 628 97 HOH HOH . H 4 HOH B 29 629 153 HOH HOH . H 4 HOH B 30 630 138 HOH HOH . H 4 HOH B 31 631 87 HOH HOH . H 4 HOH B 32 632 140 HOH HOH . H 4 HOH B 33 633 14 HOH HOH . H 4 HOH B 34 634 62 HOH HOH . H 4 HOH B 35 635 1 HOH HOH . H 4 HOH B 36 636 58 HOH HOH . H 4 HOH B 37 637 26 HOH HOH . H 4 HOH B 38 638 181 HOH HOH . H 4 HOH B 39 639 93 HOH HOH . H 4 HOH B 40 640 23 HOH HOH . H 4 HOH B 41 641 120 HOH HOH . H 4 HOH B 42 642 9 HOH HOH . H 4 HOH B 43 643 132 HOH HOH . H 4 HOH B 44 644 126 HOH HOH . H 4 HOH B 45 645 11 HOH HOH . H 4 HOH B 46 646 6 HOH HOH . H 4 HOH B 47 647 29 HOH HOH . H 4 HOH B 48 648 48 HOH HOH . H 4 HOH B 49 649 88 HOH HOH . H 4 HOH B 50 650 82 HOH HOH . H 4 HOH B 51 651 46 HOH HOH . H 4 HOH B 52 652 125 HOH HOH . H 4 HOH B 53 653 105 HOH HOH . H 4 HOH B 54 654 113 HOH HOH . H 4 HOH B 55 655 148 HOH HOH . H 4 HOH B 56 656 27 HOH HOH . H 4 HOH B 57 657 107 HOH HOH . H 4 HOH B 58 658 208 HOH HOH . H 4 HOH B 59 659 183 HOH HOH . H 4 HOH B 60 660 53 HOH HOH . H 4 HOH B 61 661 98 HOH HOH . H 4 HOH B 62 662 196 HOH HOH . H 4 HOH B 63 663 203 HOH HOH . H 4 HOH B 64 664 117 HOH HOH . H 4 HOH B 65 665 28 HOH HOH . H 4 HOH B 66 666 150 HOH HOH . H 4 HOH B 67 667 136 HOH HOH . H 4 HOH B 68 668 159 HOH HOH . H 4 HOH B 69 669 33 HOH HOH . H 4 HOH B 70 670 10 HOH HOH . H 4 HOH B 71 671 119 HOH HOH . H 4 HOH B 72 672 67 HOH HOH . H 4 HOH B 73 673 13 HOH HOH . H 4 HOH B 74 674 35 HOH HOH . H 4 HOH B 75 675 182 HOH HOH . H 4 HOH B 76 676 79 HOH HOH . H 4 HOH B 77 677 121 HOH HOH . H 4 HOH B 78 678 124 HOH HOH . H 4 HOH B 79 679 160 HOH HOH . H 4 HOH B 80 680 72 HOH HOH . H 4 HOH B 81 681 75 HOH HOH . H 4 HOH B 82 682 106 HOH HOH . H 4 HOH B 83 683 169 HOH HOH . H 4 HOH B 84 684 38 HOH HOH . H 4 HOH B 85 685 175 HOH HOH . H 4 HOH B 86 686 174 HOH HOH . H 4 HOH B 87 687 36 HOH HOH . H 4 HOH B 88 688 103 HOH HOH . H 4 HOH B 89 689 5 HOH HOH . H 4 HOH B 90 690 186 HOH HOH . H 4 HOH B 91 691 78 HOH HOH . H 4 HOH B 92 692 25 HOH HOH . H 4 HOH B 93 693 215 HOH HOH . H 4 HOH B 94 694 102 HOH HOH . H 4 HOH B 95 695 99 HOH HOH . H 4 HOH B 96 696 101 HOH HOH . H 4 HOH B 97 697 20 HOH HOH . H 4 HOH B 98 698 207 HOH HOH . H 4 HOH B 99 699 85 HOH HOH . H 4 HOH B 100 700 51 HOH HOH . H 4 HOH B 101 701 177 HOH HOH . H 4 HOH B 102 702 73 HOH HOH . H 4 HOH B 103 703 41 HOH HOH . H 4 HOH B 104 704 39 HOH HOH . H 4 HOH B 105 705 74 HOH HOH . H 4 HOH B 106 706 100 HOH HOH . H 4 HOH B 107 707 184 HOH HOH . H 4 HOH B 108 708 137 HOH HOH . H 4 HOH B 109 709 37 HOH HOH . H 4 HOH B 110 710 190 HOH HOH . H 4 HOH B 111 711 164 HOH HOH . H 4 HOH B 112 712 31 HOH HOH . H 4 HOH B 113 713 52 HOH HOH . H 4 HOH B 114 714 172 HOH HOH . H 4 HOH B 115 715 187 HOH HOH . H 4 HOH B 116 716 84 HOH HOH . H 4 HOH B 117 717 57 HOH HOH . H 4 HOH B 118 718 201 HOH HOH . H 4 HOH B 119 719 210 HOH HOH . H 4 HOH B 120 720 69 HOH HOH . H 4 HOH B 121 721 189 HOH HOH . H 4 HOH B 122 722 171 HOH HOH . H 4 HOH B 123 723 3 HOH HOH . H 4 HOH B 124 724 104 HOH HOH . H 4 HOH B 125 725 179 HOH HOH . H 4 HOH B 126 726 170 HOH HOH . H 4 HOH B 127 727 195 HOH HOH . H 4 HOH B 128 728 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O25 K55 . . . D 3 18.487 -3.101 34.17 1 24.93 ? O25 K55 502 A 1 HETATM 2 O O26 K55 . . . D 3 20.53 -2.345 34.487 1 24.53 ? O26 K55 502 A 1 HETATM 3 C C1 K55 . . . D 3 19.29 -2.263 34.625 1 27.38 ? C1 K55 502 A 1 HETATM 4 C C2 K55 . . . D 3 18.717 -1.041 35.356 1 25.76 ? C2 K55 502 A 1 HETATM 5 C C3 K55 . . . D 3 19.609 -0.616 36.533 1 25.15 ? C3 K55 502 A 1 HETATM 6 C C4 K55 . . . D 3 19.7 -1.668 37.624 1 26.49 ? C4 K55 502 A 1 HETATM 7 C C5 K55 . . . D 3 18.521 0.086 34.336 1 29.69 ? C5 K55 502 A 1 HETATM 8 C C6 K55 . . . D 3 17.847 1.329 34.864 1 27.8 ? C6 K55 502 A 1 HETATM 9 C C7 K55 . . . D 3 16.505 1.321 35.245 1 24.7 ? C7 K55 502 A 1 HETATM 10 C C8 K55 . . . D 3 15.86 2.467 35.707 1 29.63 ? C8 K55 502 A 1 HETATM 11 C C9 K55 . . . D 3 16.597 3.653 35.774 1 27.52 ? C9 K55 502 A 1 HETATM 12 C C10 K55 . . . D 3 17.924 3.684 35.384 1 26.64 ? C10 K55 502 A 1 HETATM 13 C C11 K55 . . . D 3 18.534 2.529 34.934 1 28.25 ? C11 K55 502 A 1 HETATM 14 O O33 K55 . . . D 3 15.918 4.757 36.209 1 32.29 ? O33 K55 502 A 1 HETATM 15 C C21 K55 . . . D 3 16.55 6.034 36.053 1 35.27 ? C21 K55 502 A 1 HETATM 16 C C22 K55 . . . D 3 15.509 7.102 36.256 1 41.28 ? C22 K55 502 A 1 HETATM 17 C C23 K55 . . . D 3 14.484 7.205 35.154 1 37.26 ? C23 K55 502 A 1 HETATM 18 C C24 K55 . . . D 3 15.047 7.691 33.837 1 39.69 ? C24 K55 502 A 1 HETATM 19 C C12 K55 . . . D 3 14.412 2.442 36.12 1 24.57 ? C12 K55 502 A 1 HETATM 20 N N27 K55 . . . D 3 14.198 2.814 37.517 1 27.64 ? N27 K55 502 A 1 HETATM 21 C C13 K55 . . . D 3 13.085 2.468 38.168 1 30.03 ? C13 K55 502 A 1 HETATM 22 O O28 K55 . . . D 3 12.178 1.834 37.635 1 34.45 ? O28 K55 502 A 1 HETATM 23 C C14 K55 . . . D 3 12.967 2.885 39.602 1 26.71 ? C14 K55 502 A 1 HETATM 24 C C15 K55 . . . D 3 13.715 3.877 40.203 1 28.27 ? C15 K55 502 A 1 HETATM 25 C C16 K55 . . . D 3 13.569 4.231 41.524 1 30.19 ? C16 K55 502 A 1 HETATM 26 C C17 K55 . . . D 3 12.627 3.576 42.3 1 25.37 ? C17 K55 502 A 1 HETATM 27 C C18 K55 . . . D 3 11.849 2.586 41.728 1 26.11 ? C18 K55 502 A 1 HETATM 28 C C19 K55 . . . D 3 12.017 2.248 40.396 1 28.48 ? C19 K55 502 A 1 HETATM 29 C C20 K55 . . . D 3 12.443 3.954 43.732 1 30.73 ? C20 K55 502 A 1 HETATM 30 F F29 K55 . . . D 3 14.644 4.539 39.478 1 31.51 ? F29 K55 502 A 1 HETATM 31 F F30 K55 . . . D 3 11.184 4.248 44.019 1 34.35 ? F30 K55 502 A 1 HETATM 32 F F31 K55 . . . D 3 13.157 5.019 44.087 1 32.82 ? F31 K55 502 A 1 HETATM 33 F F32 K55 . . . D 3 12.795 2.982 44.565 1 37.33 ? F32 K55 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #