data_7VWG # _model_server_result.job_id d6XRXbrliiXZjOprHt3yjA _model_server_result.datetime_utc '2024-11-26 20:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vwg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7VWG # _exptl.entry_id 7VWG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.372 _cell.angle_gamma 90 _cell.entry_id 7VWG _cell.length_a 39.5 _cell.length_b 94.314 _cell.length_c 96.247 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VWG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 128 n n C5 C4 B7G sing 129 n n C5 C6 B7G sing 130 n n C5 H5 B7G sing 131 n n O5 C1 B7G sing 132 n n C1 C2 B7G sing 133 n n C1 O1 B7G sing 134 n n C1 H1 B7G sing 135 n n C2 C3 B7G sing 136 n n C2 O2 B7G sing 137 n n C2 H2 B7G sing 138 n n C3 C4 B7G sing 139 n n C3 O3 B7G sing 140 n n C3 H3 B7G sing 141 n n C4 O4 B7G sing 142 n n C4 H4 B7G sing 143 n n C6 O6 B7G sing 144 n n C6 H61 B7G sing 145 n n C6 H62 B7G sing 146 n n O1 C7 B7G sing 147 n n C7 C8 B7G sing 148 n n C7 H71 B7G sing 149 n n C7 H72 B7G sing 150 n n C8 C9 B7G sing 151 n n C8 H81 B7G sing 152 n n C8 H82 B7G sing 153 n n C9 C10 B7G sing 154 n n C9 H91 B7G sing 155 n n C9 H92 B7G sing 156 n n C10 C11 B7G sing 157 n n C10 H101 B7G sing 158 n n C10 H102 B7G sing 159 n n C11 C12 B7G sing 160 n n C11 H111 B7G sing 161 n n C11 H112 B7G sing 162 n n C12 C13 B7G sing 163 n n C12 H121 B7G sing 164 n n C12 H122 B7G sing 165 n n O2 HO2 B7G sing 166 n n O3 HO3 B7G sing 167 n n O4 HO4 B7G sing 168 n n O6 HO6 B7G sing 169 n n C13 H131 B7G sing 170 n n C13 H132 B7G sing 171 n n C13 H133 B7G sing 172 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7VWG _atom_sites.fract_transf_matrix[1][1] 0.025316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003275 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 501 921 B7G B7G . D 3 820 A 1 502 922 820 JJF . E 2 B7G A 1 503 920 B7G B7G . F 3 820 B 1 501 923 820 JJF . G 4 HOH A 1 601 40 HOH HOH . G 4 HOH A 2 602 32 HOH HOH . G 4 HOH A 3 603 17 HOH HOH . G 4 HOH A 4 604 62 HOH HOH . G 4 HOH A 5 605 35 HOH HOH . G 4 HOH A 6 606 69 HOH HOH . G 4 HOH A 7 607 39 HOH HOH . G 4 HOH A 8 608 72 HOH HOH . G 4 HOH A 9 609 70 HOH HOH . G 4 HOH A 10 610 60 HOH HOH . G 4 HOH A 11 611 75 HOH HOH . G 4 HOH A 12 612 38 HOH HOH . G 4 HOH A 13 613 15 HOH HOH . G 4 HOH A 14 614 50 HOH HOH . G 4 HOH A 15 615 71 HOH HOH . G 4 HOH A 16 616 51 HOH HOH . G 4 HOH A 17 617 74 HOH HOH . G 4 HOH A 18 618 14 HOH HOH . G 4 HOH A 19 619 48 HOH HOH . G 4 HOH A 20 620 34 HOH HOH . G 4 HOH A 21 621 52 HOH HOH . G 4 HOH A 22 622 65 HOH HOH . G 4 HOH A 23 623 33 HOH HOH . G 4 HOH A 24 624 73 HOH HOH . G 4 HOH A 25 625 49 HOH HOH . G 4 HOH A 26 626 57 HOH HOH . G 4 HOH A 27 627 66 HOH HOH . G 4 HOH A 28 628 78 HOH HOH . G 4 HOH A 29 629 43 HOH HOH . G 4 HOH A 30 630 47 HOH HOH . G 4 HOH A 31 631 59 HOH HOH . G 4 HOH A 32 632 30 HOH HOH . G 4 HOH A 33 633 76 HOH HOH . G 4 HOH A 34 634 55 HOH HOH . G 4 HOH A 35 635 44 HOH HOH . G 4 HOH A 36 636 31 HOH HOH . G 4 HOH A 37 637 16 HOH HOH . H 4 HOH B 1 601 7 HOH HOH . H 4 HOH B 2 602 61 HOH HOH . H 4 HOH B 3 603 12 HOH HOH . H 4 HOH B 4 604 19 HOH HOH . H 4 HOH B 5 605 3 HOH HOH . H 4 HOH B 6 606 68 HOH HOH . H 4 HOH B 7 607 41 HOH HOH . H 4 HOH B 8 608 23 HOH HOH . H 4 HOH B 9 609 45 HOH HOH . H 4 HOH B 10 610 10 HOH HOH . H 4 HOH B 11 611 27 HOH HOH . H 4 HOH B 12 612 26 HOH HOH . H 4 HOH B 13 613 2 HOH HOH . H 4 HOH B 14 614 5 HOH HOH . H 4 HOH B 15 615 54 HOH HOH . H 4 HOH B 16 616 37 HOH HOH . H 4 HOH B 17 617 21 HOH HOH . H 4 HOH B 18 618 25 HOH HOH . H 4 HOH B 19 619 24 HOH HOH . H 4 HOH B 20 620 9 HOH HOH . H 4 HOH B 21 621 13 HOH HOH . H 4 HOH B 22 622 4 HOH HOH . H 4 HOH B 23 623 67 HOH HOH . H 4 HOH B 24 624 42 HOH HOH . H 4 HOH B 25 625 64 HOH HOH . H 4 HOH B 26 626 20 HOH HOH . H 4 HOH B 27 627 63 HOH HOH . H 4 HOH B 28 628 77 HOH HOH . H 4 HOH B 29 629 36 HOH HOH . H 4 HOH B 30 630 1 HOH HOH . H 4 HOH B 31 631 22 HOH HOH . H 4 HOH B 32 632 6 HOH HOH . H 4 HOH B 33 633 28 HOH HOH . H 4 HOH B 34 634 11 HOH HOH . H 4 HOH B 35 635 8 HOH HOH . H 4 HOH B 36 636 56 HOH HOH . H 4 HOH B 37 637 29 HOH HOH . H 4 HOH B 38 638 53 HOH HOH . H 4 HOH B 39 639 18 HOH HOH . H 4 HOH B 40 640 58 HOH HOH . H 4 HOH B 41 641 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . C 2 21.765 -17.965 26.416 1 51.14 ? C5 B7G 501 A 1 HETATM 2 O O5 B7G . . . C 2 21.126 -16.937 27.257 1 52.11 ? O5 B7G 501 A 1 HETATM 3 C C1 B7G . . . C 2 21.916 -15.694 27.309 1 50.46 ? C1 B7G 501 A 1 HETATM 4 C C2 B7G . . . C 2 23.343 -15.953 27.756 1 52.02 ? C2 B7G 501 A 1 HETATM 5 C C3 B7G . . . C 2 24.003 -16.999 26.947 1 55.58 ? C3 B7G 501 A 1 HETATM 6 C C4 B7G . . . C 2 23.201 -18.235 26.829 1 55.68 ? C4 B7G 501 A 1 HETATM 7 C C6 B7G . . . C 2 20.99 -19.23 26.527 1 44.55 ? C6 B7G 501 A 1 HETATM 8 O O1 B7G . . . C 2 21.31 -14.805 28.181 1 50.66 ? O1 B7G 501 A 1 HETATM 9 C C7 B7G . . . C 2 20.547 -13.817 27.526 1 45.12 ? C7 B7G 501 A 1 HETATM 10 C C8 B7G . . . C 2 19.405 -13.361 28.41 1 44.24 ? C8 B7G 501 A 1 HETATM 11 C C9 B7G . . . C 2 18.379 -12.647 27.556 1 34.06 ? C9 B7G 501 A 1 HETATM 12 C C10 B7G . . . C 2 17.063 -12.572 28.295 1 32.7 ? C10 B7G 501 A 1 HETATM 13 C C11 B7G . . . C 2 16.003 -11.986 27.39 1 32.44 ? C11 B7G 501 A 1 HETATM 14 C C12 B7G . . . C 2 14.861 -12.97 27.246 1 40.34 ? C12 B7G 501 A 1 HETATM 15 O O2 B7G . . . C 2 24.098 -14.732 27.633 1 49.3 ? O2 B7G 501 A 1 HETATM 16 O O3 B7G . . . C 2 25.283 -17.335 27.57 1 55.46 ? O3 B7G 501 A 1 HETATM 17 O O4 B7G . . . C 2 23.813 -19.094 25.845 1 57.36 ? O4 B7G 501 A 1 HETATM 18 O O6 B7G . . . C 2 19.698 -19.033 26 1 48.72 ? O6 B7G 501 A 1 HETATM 19 C C13 B7G . . . C 2 14.271 -13.277 28.606 1 40.36 ? C13 B7G 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 408 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #