data_7VWH # _model_server_result.job_id qs2mwvVFuVwUR1sPUwnp2w _model_server_result.datetime_utc '2024-11-26 05:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vwh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 7VWH # _exptl.entry_id 7VWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.635 _cell.angle_gamma 90 _cell.entry_id 7VWH _cell.length_a 39.588 _cell.length_b 94.139 _cell.length_c 96.184 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 137 n n C5 C4 B7G sing 138 n n C5 C6 B7G sing 139 n n C5 H5 B7G sing 140 n n O5 C1 B7G sing 141 n n C1 C2 B7G sing 142 n n C1 O1 B7G sing 143 n n C1 H1 B7G sing 144 n n C2 C3 B7G sing 145 n n C2 O2 B7G sing 146 n n C2 H2 B7G sing 147 n n C3 C4 B7G sing 148 n n C3 O3 B7G sing 149 n n C3 H3 B7G sing 150 n n C4 O4 B7G sing 151 n n C4 H4 B7G sing 152 n n C6 O6 B7G sing 153 n n C6 H61 B7G sing 154 n n C6 H62 B7G sing 155 n n O1 C7 B7G sing 156 n n C7 C8 B7G sing 157 n n C7 H71 B7G sing 158 n n C7 H72 B7G sing 159 n n C8 C9 B7G sing 160 n n C8 H81 B7G sing 161 n n C8 H82 B7G sing 162 n n C9 C10 B7G sing 163 n n C9 H91 B7G sing 164 n n C9 H92 B7G sing 165 n n C10 C11 B7G sing 166 n n C10 H101 B7G sing 167 n n C10 H102 B7G sing 168 n n C11 C12 B7G sing 169 n n C11 H111 B7G sing 170 n n C11 H112 B7G sing 171 n n C12 C13 B7G sing 172 n n C12 H121 B7G sing 173 n n C12 H122 B7G sing 174 n n O2 HO2 B7G sing 175 n n O3 HO3 B7G sing 176 n n O4 HO4 B7G sing 177 n n O6 HO6 B7G sing 178 n n C13 H131 B7G sing 179 n n C13 H132 B7G sing 180 n n C13 H133 B7G sing 181 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7VWH _atom_sites.fract_transf_matrix[1][1] 0.02526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002938 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 82K A 1 501 922 82K JJI . D 3 B7G B 1 501 921 B7G B7G . E 3 B7G B 1 502 920 B7G B7G . F 2 82K B 1 503 923 82K JJI . G 4 HOH A 1 601 34 HOH HOH . G 4 HOH A 2 602 13 HOH HOH . G 4 HOH A 3 603 46 HOH HOH . G 4 HOH A 4 604 49 HOH HOH . G 4 HOH A 5 605 2 HOH HOH . G 4 HOH A 6 606 26 HOH HOH . G 4 HOH A 7 607 20 HOH HOH . G 4 HOH A 8 608 11 HOH HOH . G 4 HOH A 9 609 32 HOH HOH . G 4 HOH A 10 610 12 HOH HOH . G 4 HOH A 11 611 33 HOH HOH . G 4 HOH A 12 612 35 HOH HOH . G 4 HOH A 13 613 51 HOH HOH . G 4 HOH A 14 614 19 HOH HOH . G 4 HOH A 15 615 50 HOH HOH . G 4 HOH A 16 616 69 HOH HOH . G 4 HOH A 17 617 36 HOH HOH . G 4 HOH A 18 618 27 HOH HOH . G 4 HOH A 19 619 63 HOH HOH . G 4 HOH A 20 620 28 HOH HOH . G 4 HOH A 21 621 15 HOH HOH . G 4 HOH A 22 622 41 HOH HOH . G 4 HOH A 23 623 66 HOH HOH . G 4 HOH A 24 624 14 HOH HOH . G 4 HOH A 25 625 44 HOH HOH . G 4 HOH A 26 626 52 HOH HOH . H 4 HOH B 1 601 55 HOH HOH . H 4 HOH B 2 602 25 HOH HOH . H 4 HOH B 3 603 42 HOH HOH . H 4 HOH B 4 604 24 HOH HOH . H 4 HOH B 5 605 4 HOH HOH . H 4 HOH B 6 606 6 HOH HOH . H 4 HOH B 7 607 39 HOH HOH . H 4 HOH B 8 608 48 HOH HOH . H 4 HOH B 9 609 1 HOH HOH . H 4 HOH B 10 610 10 HOH HOH . H 4 HOH B 11 611 22 HOH HOH . H 4 HOH B 12 612 8 HOH HOH . H 4 HOH B 13 613 60 HOH HOH . H 4 HOH B 14 614 5 HOH HOH . H 4 HOH B 15 615 30 HOH HOH . H 4 HOH B 16 616 45 HOH HOH . H 4 HOH B 17 617 3 HOH HOH . H 4 HOH B 18 618 31 HOH HOH . H 4 HOH B 19 619 9 HOH HOH . H 4 HOH B 20 620 29 HOH HOH . H 4 HOH B 21 621 7 HOH HOH . H 4 HOH B 22 622 59 HOH HOH . H 4 HOH B 23 623 17 HOH HOH . H 4 HOH B 24 624 68 HOH HOH . H 4 HOH B 25 625 23 HOH HOH . H 4 HOH B 26 626 40 HOH HOH . H 4 HOH B 27 627 53 HOH HOH . H 4 HOH B 28 628 65 HOH HOH . H 4 HOH B 29 629 38 HOH HOH . H 4 HOH B 30 630 58 HOH HOH . H 4 HOH B 31 631 18 HOH HOH . H 4 HOH B 32 632 62 HOH HOH . H 4 HOH B 33 633 37 HOH HOH . H 4 HOH B 34 634 16 HOH HOH . H 4 HOH B 35 635 64 HOH HOH . H 4 HOH B 36 636 47 HOH HOH . H 4 HOH B 37 637 54 HOH HOH . H 4 HOH B 38 638 21 HOH HOH . H 4 HOH B 39 639 57 HOH HOH . H 4 HOH B 40 640 56 HOH HOH . H 4 HOH B 41 641 67 HOH HOH . H 4 HOH B 42 642 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . E 3 21.989 -18.479 22.461 1 49.13 ? C5 B7G 502 B 1 HETATM 2 O O5 B7G . . . E 3 21.54 -19.557 21.556 1 47.12 ? O5 B7G 502 B 1 HETATM 3 C C1 B7G . . . E 3 22.337 -20.794 21.665 1 46.91 ? C1 B7G 502 B 1 HETATM 4 C C2 B7G . . . E 3 23.818 -20.495 21.485 1 50.15 ? C2 B7G 502 B 1 HETATM 5 C C3 B7G . . . E 3 24.26 -19.523 22.514 1 51.95 ? C3 B7G 502 B 1 HETATM 6 C C4 B7G . . . E 3 23.496 -18.262 22.454 1 55.37 ? C4 B7G 502 B 1 HETATM 7 C C6 B7G . . . E 3 21.348 -17.208 22.031 1 47.87 ? C6 B7G 502 B 1 HETATM 8 O O1 B7G . . . E 3 21.901 -21.704 20.714 1 44.26 ? O1 B7G 502 B 1 HETATM 9 C C7 B7G . . . E 3 20.615 -22.241 20.959 1 38.53 ? C7 B7G 502 B 1 HETATM 10 C C8 B7G . . . E 3 20.355 -23.411 20.023 1 34.81 ? C8 B7G 502 B 1 HETATM 11 C C9 B7G . . . E 3 19.093 -24.158 20.411 1 34.58 ? C9 B7G 502 B 1 HETATM 12 C C10 B7G . . . E 3 17.854 -23.344 20.095 1 32.51 ? C10 B7G 502 B 1 HETATM 13 C C11 B7G . . . E 3 16.659 -24.271 20.092 1 29.8 ? C11 B7G 502 B 1 HETATM 14 C C12 B7G . . . E 3 15.377 -23.474 19.996 1 34.62 ? C12 B7G 502 B 1 HETATM 15 O O2 B7G . . . E 3 24.576 -21.718 21.586 1 42.65 ? O2 B7G 502 B 1 HETATM 16 O O3 B7G . . . E 3 25.667 -19.176 22.344 1 53.3 ? O3 B7G 502 B 1 HETATM 17 O O4 B7G . . . E 3 23.865 -17.445 23.588 1 51.04 ? O4 B7G 502 B 1 HETATM 18 O O6 B7G . . . E 3 20.009 -17.185 22.465 1 51.54 ? O6 B7G 502 B 1 HETATM 19 C C13 B7G . . . E 3 15.174 -22.979 18.578 1 36.1 ? C13 B7G 502 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #