data_7VXS # _model_server_result.job_id 6271hGqfGW4e1tkidDkJpw _model_server_result.datetime_utc '2024-12-21 17:25:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":102}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . VA 30 217.66 161.947 115.345 1 95.67 ? C1 CDL 102 n 1 HETATM 2 O O1 CDL . . . VA 30 216.91 160.994 116.106 1 88.31 ? O1 CDL 102 n 1 HETATM 3 C CA2 CDL . . . VA 30 219.045 161.375 115.088 1 93.36 ? CA2 CDL 102 n 1 HETATM 4 O OA2 CDL . . . VA 30 219.599 161.002 116.344 1 102.07 ? OA2 CDL 102 n 1 HETATM 5 P PA1 CDL . . . VA 30 220.226 159.537 116.531 1 119.03 ? PA1 CDL 102 n 1 HETATM 6 O OA3 CDL . . . VA 30 219.295 158.552 115.87 1 96.59 ? OA3 CDL 102 n 1 HETATM 7 O OA4 CDL . . . VA 30 221.68 159.586 116.135 1 108.44 ? OA4 CDL 102 n 1 HETATM 8 O OA5 CDL . . . VA 30 220.138 159.331 118.122 1 96.25 ? OA5 CDL 102 n 1 HETATM 9 C CA3 CDL . . . VA 30 219.705 158.08 118.646 1 92.94 ? CA3 CDL 102 n 1 HETATM 10 C CA4 CDL . . . VA 30 219.803 158.091 120.163 1 94.62 ? CA4 CDL 102 n 1 HETATM 11 O OA6 CDL . . . VA 30 219.317 159.348 120.631 1 99.96 ? OA6 CDL 102 n 1 HETATM 12 C CA5 CDL . . . VA 30 219.837 159.752 121.928 1 95.4 ? CA5 CDL 102 n 1 HETATM 13 O OA7 CDL . . . VA 30 220.124 158.907 122.757 1 91.82 ? OA7 CDL 102 n 1 HETATM 14 C C11 CDL . . . VA 30 220.02 161.216 122.242 1 91.54 ? C11 CDL 102 n 1 HETATM 15 C C12 CDL . . . VA 30 220.106 161.392 123.752 1 87.52 ? C12 CDL 102 n 1 HETATM 16 C C13 CDL . . . VA 30 218.782 161.025 124.409 1 89.71 ? C13 CDL 102 n 1 HETATM 17 C CA6 CDL . . . VA 30 221.269 157.908 120.523 1 92.06 ? CA6 CDL 102 n 1 HETATM 18 O OA8 CDL . . . VA 30 221.362 156.992 121.609 1 96.51 ? OA8 CDL 102 n 1 HETATM 19 C CA7 CDL . . . VA 30 222.465 156.048 121.655 1 96.91 ? CA7 CDL 102 n 1 HETATM 20 O OA9 CDL . . . VA 30 223.346 156.126 120.816 1 96.8 ? OA9 CDL 102 n 1 HETATM 21 C C31 CDL . . . VA 30 222.509 154.987 122.727 1 89.89 ? C31 CDL 102 n 1 HETATM 22 C C32 CDL . . . VA 30 223.721 154.092 122.498 1 85.13 ? C32 CDL 102 n 1 HETATM 23 C CB2 CDL . . . VA 30 217.788 163.281 116.078 1 94.47 ? CB2 CDL 102 n 1 HETATM 24 O OB2 CDL . . . VA 30 216.714 163.466 116.996 1 100.28 ? OB2 CDL 102 n 1 HETATM 25 P PB2 CDL . . . VA 30 215.451 164.366 116.585 1 103.39 ? PB2 CDL 102 n 1 HETATM 26 O OB3 CDL . . . VA 30 215.969 165.692 116.087 1 93.18 ? OB3 CDL 102 n 1 HETATM 27 O OB4 CDL . . . VA 30 214.558 163.53 115.704 1 92.42 ? OB4 CDL 102 n 1 HETATM 28 O OB5 CDL . . . VA 30 214.709 164.601 117.992 1 92.02 ? OB5 CDL 102 n 1 HETATM 29 C CB3 CDL . . . VA 30 213.484 163.929 118.273 1 87.09 ? CB3 CDL 102 n 1 HETATM 30 C CB4 CDL . . . VA 30 212.48 164.863 118.937 1 87.38 ? CB4 CDL 102 n 1 HETATM 31 O OB6 CDL . . . VA 30 213.15 165.858 119.709 1 96.25 ? OB6 CDL 102 n 1 HETATM 32 C CB5 CDL . . . VA 30 212.344 167.051 119.928 1 90.23 ? CB5 CDL 102 n 1 HETATM 33 O OB7 CDL . . . VA 30 211.226 167.124 119.453 1 88.01 ? OB7 CDL 102 n 1 HETATM 34 C C51 CDL . . . VA 30 212.901 168.203 120.727 1 89.92 ? C51 CDL 102 n 1 HETATM 35 C C52 CDL . . . VA 30 211.839 168.745 121.674 1 84.69 ? C52 CDL 102 n 1 HETATM 36 C C53 CDL . . . VA 30 211.99 168.107 123.049 1 88.7 ? C53 CDL 102 n 1 HETATM 37 C C54 CDL . . . VA 30 211.373 168.972 124.141 1 91.53 ? C54 CDL 102 n 1 HETATM 38 C C55 CDL . . . VA 30 209.922 168.585 124.393 1 92.22 ? C55 CDL 102 n 1 HETATM 39 C C56 CDL . . . VA 30 209.339 169.37 125.561 1 90.11 ? C56 CDL 102 n 1 HETATM 40 C C57 CDL . . . VA 30 210.399 169.626 126.622 1 90.65 ? C57 CDL 102 n 1 HETATM 41 C C58 CDL . . . VA 30 209.759 169.965 127.961 1 90.8 ? C58 CDL 102 n 1 HETATM 42 C C59 CDL . . . VA 30 210.801 170.502 128.932 1 88.94 ? C59 CDL 102 n 1 HETATM 43 C C60 CDL . . . VA 30 212.013 169.581 128.998 1 89.68 ? C60 CDL 102 n 1 HETATM 44 C CB6 CDL . . . VA 30 211.569 164.043 119.839 1 85.65 ? CB6 CDL 102 n 1 HETATM 45 O OB8 CDL . . . VA 30 212.344 163.479 120.892 1 87.16 ? OB8 CDL 102 n 1 HETATM 46 C CB7 CDL . . . VA 30 211.727 163.245 122.185 1 90.83 ? CB7 CDL 102 n 1 HETATM 47 O OB9 CDL . . . VA 30 210.523 163.386 122.298 1 89.83 ? OB9 CDL 102 n 1 HETATM 48 C C71 CDL . . . VA 30 212.562 162.847 123.376 1 89.5 ? C71 CDL 102 n 1 HETATM 49 C C72 CDL . . . VA 30 213.752 163.786 123.504 1 88.52 ? C72 CDL 102 n 1 HETATM 50 C C73 CDL . . . VA 30 214.472 163.559 124.826 1 87.15 ? C73 CDL 102 n 1 HETATM 51 C C74 CDL . . . VA 30 213.766 164.289 125.961 1 87.67 ? C74 CDL 102 n 1 HETATM 52 C C75 CDL . . . VA 30 214.072 165.78 125.919 1 87.44 ? C75 CDL 102 n 1 HETATM 53 C C76 CDL . . . VA 30 213.402 166.516 127.072 1 92.1 ? C76 CDL 102 n 1 HETATM 54 C C77 CDL . . . VA 30 213.73 165.862 128.408 1 92.77 ? C77 CDL 102 n 1 HETATM 55 C C78 CDL . . . VA 30 215.226 165.899 128.69 1 91.76 ? C78 CDL 102 n 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 181 _model_server_stats.query_time_ms 930 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 55 #