data_7VXS
#
_model_server_result.job_id            0xiaQW-jfslk18j9m3Vmvg 
_model_server_result.datetime_utc      '2024-12-21 16:59:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":201}' 
#
_entry.id    7VXS 
#
_exptl.entry_id    7VXS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VXS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 EA N N 
? 30 HA N N 
? 30 KA N N 
? 30 QA N N 
? 30 RA N N 
? 30 TA N N 
? 30 VA N N 
? 30 YA N N 
? 30 AB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VXS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 CDL V 1 201 201 CDL CDL . 
EA 30 CDL V 1 202 203 CDL CDL . 
FA 31 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 30 CDL a 1 201 201 CDL CDL . 
IA 31 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 30 CDL i 1 401 401 CDL CDL . 
LA 31 PEE i 1 402 718 PEE PEE . 
MA 31 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 PEE l 1 701 207 PEE PEE . 
QA 30 CDL l 1 702 712 CDL CDL . 
RA 30 CDL l 1 703 713 CDL CDL . 
SA 31 PEE l 1 704 719 PEE PEE . 
TA 30 CDL m 1 201 101 CDL CDL . 
UA 33 PLX n 1 101 101 PLX PLX . 
VA 30 CDL n 1 102 102 CDL CDL . 
WA 31 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 201 PLX PLX . 
YA 30 CDL r 1 503 714 CDL CDL . 
ZA 31 PEE s 1 401 201 PEE PEE . 
AB 30 CDL s 1 402 201 CDL CDL . 
BB 31 PEE s 1 403 401 PEE PEE . 
CB 34 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . DA 30 176.14 188.05 152.153 1 90.99 ? C1 CDL 201 V 1 
HETATM 2 O O1 CDL . . . DA 30 177.262 188.791 152.532 1 92.59 ? O1 CDL 201 V 1 
HETATM 3 C CA2 CDL . . . DA 30 174.884 188.942 152.342 1 90.5 ? CA2 CDL 201 V 1 
HETATM 4 O OA2 CDL . . . DA 30 174.706 189.734 151.174 1 94.52 ? OA2 CDL 201 V 1 
HETATM 5 P PA1 CDL . . . DA 30 173.851 191.149 151.31 1 108.8 ? PA1 CDL 201 V 1 
HETATM 6 O OA3 CDL . . . DA 30 172.7 190.948 152.263 1 96.93 ? OA3 CDL 201 V 1 
HETATM 7 O OA4 CDL . . . DA 30 174.752 192.226 151.838 1 95.26 ? OA4 CDL 201 V 1 
HETATM 8 O OA5 CDL . . . DA 30 173.264 191.598 149.82 1 90.48 ? OA5 CDL 201 V 1 
HETATM 9 C CA3 CDL . . . DA 30 174.016 192.512 149.036 1 87.26 ? CA3 CDL 201 V 1 
HETATM 10 C CA4 CDL . . . DA 30 174.613 191.764 147.848 1 92.88 ? CA4 CDL 201 V 1 
HETATM 11 O OA6 CDL . . . DA 30 174.41 192.473 146.647 1 93.63 ? OA6 CDL 201 V 1 
HETATM 12 C CA5 CDL . . . DA 30 173.133 192.339 146.024 1 91.04 ? CA5 CDL 201 V 1 
HETATM 13 O OA7 CDL . . . DA 30 172.153 192.76 146.556 1 93.32 ? OA7 CDL 201 V 1 
HETATM 14 C C11 CDL . . . DA 30 173.009 191.644 144.63 1 85.36 ? C11 CDL 201 V 1 
HETATM 15 C C12 CDL . . . DA 30 172.431 192.574 143.559 1 86.83 ? C12 CDL 201 V 1 
HETATM 16 C C13 CDL . . . DA 30 172.215 191.859 142.227 1 84.66 ? C13 CDL 201 V 1 
HETATM 17 C C14 CDL . . . DA 30 172.98 192.533 141.072 1 86.62 ? C14 CDL 201 V 1 
HETATM 18 C C15 CDL . . . DA 30 172.984 191.665 139.781 1 88.41 ? C15 CDL 201 V 1 
HETATM 19 C C16 CDL . . . DA 30 173.633 192.396 138.579 1 91.93 ? C16 CDL 201 V 1 
HETATM 20 C C17 CDL . . . DA 30 172.746 192.336 137.298 1 90.25 ? C17 CDL 201 V 1 
HETATM 21 C C18 CDL . . . DA 30 173.197 193.356 136.221 1 87.83 ? C18 CDL 201 V 1 
HETATM 22 C C19 CDL . . . DA 30 172.27 193.348 134.972 1 88.51 ? C19 CDL 201 V 1 
HETATM 23 C C20 CDL . . . DA 30 172.702 194.389 133.91 1 90.98 ? C20 CDL 201 V 1 
HETATM 24 C C21 CDL . . . DA 30 171.768 194.393 132.67 1 85.62 ? C21 CDL 201 V 1 
HETATM 25 C C22 CDL . . . DA 30 172.282 195.334 131.544 1 86.11 ? C22 CDL 201 V 1 
HETATM 26 C C23 CDL . . . DA 30 171.283 195.442 130.369 1 88.83 ? C23 CDL 201 V 1 
HETATM 27 C C24 CDL . . . DA 30 171.417 194.273 129.359 1 88.83 ? C24 CDL 201 V 1 
HETATM 28 C C25 CDL . . . DA 30 172.641 194.43 128.439 1 88.46 ? C25 CDL 201 V 1 
HETATM 29 C CA6 CDL . . . DA 30 174.015 190.344 147.757 1 95.4 ? CA6 CDL 201 V 1 
HETATM 30 O OA8 CDL . . . DA 30 174.888 189.55 146.978 1 99.09 ? OA8 CDL 201 V 1 
HETATM 31 C CA7 CDL . . . DA 30 174.373 188.259 146.643 1 93.18 ? CA7 CDL 201 V 1 
HETATM 32 O OA9 CDL . . . DA 30 173.787 187.625 147.45 1 90.97 ? OA9 CDL 201 V 1 
HETATM 33 C C31 CDL . . . DA 30 174.582 187.699 145.223 1 87.74 ? C31 CDL 201 V 1 
HETATM 34 C C32 CDL . . . DA 30 176.014 187.219 145.003 1 88.18 ? C32 CDL 201 V 1 
HETATM 35 C C33 CDL . . . DA 30 176.921 188.339 144.471 1 90.09 ? C33 CDL 201 V 1 
HETATM 36 C C34 CDL . . . DA 30 177.291 188.165 142.978 1 93.76 ? C34 CDL 201 V 1 
HETATM 37 C C35 CDL . . . DA 30 177.225 186.688 142.506 1 91.09 ? C35 CDL 201 V 1 
HETATM 38 C C36 CDL . . . DA 30 176.168 186.463 141.399 1 89.5 ? C36 CDL 201 V 1 
HETATM 39 C C37 CDL . . . DA 30 176.277 187.488 140.257 1 91.17 ? C37 CDL 201 V 1 
HETATM 40 C C38 CDL . . . DA 30 174.982 187.582 139.442 1 88.19 ? C38 CDL 201 V 1 
HETATM 41 C C39 CDL . . . DA 30 175.08 188.603 138.292 1 87.29 ? C39 CDL 201 V 1 
HETATM 42 C C40 CDL . . . DA 30 175.095 187.916 136.908 1 91.6 ? C40 CDL 201 V 1 
HETATM 43 C C41 CDL . . . DA 30 174.716 188.895 135.744 1 94.24 ? C41 CDL 201 V 1 
HETATM 44 C C42 CDL . . . DA 30 174.469 188.141 134.409 1 94.05 ? C42 CDL 201 V 1 
HETATM 45 C C43 CDL . . . DA 30 173.442 188.867 133.492 1 93.43 ? C43 CDL 201 V 1 
HETATM 46 C C44 CDL . . . DA 30 173.944 190.259 133.026 1 90.94 ? C44 CDL 201 V 1 
HETATM 47 C C45 CDL . . . DA 30 172.954 190.945 132.088 1 89.88 ? C45 CDL 201 V 1 
HETATM 48 C C46 CDL . . . DA 30 172.684 190.127 130.81 1 88.12 ? C46 CDL 201 V 1 
HETATM 49 C C47 CDL . . . DA 30 173.952 189.884 129.998 1 87.63 ? C47 CDL 201 V 1 
HETATM 50 C CB2 CDL . . . DA 30 176.341 187.586 150.669 1 90.75 ? CB2 CDL 201 V 1 
HETATM 51 O OB2 CDL . . . DA 30 175.118 187.038 150.193 1 96.57 ? OB2 CDL 201 V 1 
HETATM 52 P PB2 CDL . . . DA 30 174.791 185.42 150.497 1 113.53 ? PB2 CDL 201 V 1 
HETATM 53 O OB3 CDL . . . DA 30 175.812 184.863 151.473 1 92.97 ? OB3 CDL 201 V 1 
HETATM 54 O OB4 CDL . . . DA 30 173.406 185.289 151.086 1 97.03 ? OB4 CDL 201 V 1 
HETATM 55 O OB5 CDL . . . DA 30 174.871 184.557 149.062 1 94.06 ? OB5 CDL 201 V 1 
HETATM 56 C CB3 CDL . . . DA 30 173.654 184.169 148.439 1 89.47 ? CB3 CDL 201 V 1 
HETATM 57 C CB4 CDL . . . DA 30 173.803 182.721 147.955 1 90.13 ? CB4 CDL 201 V 1 
HETATM 58 O OB6 CDL . . . DA 30 175.168 182.394 147.869 1 93.87 ? OB6 CDL 201 V 1 
HETATM 59 C CB5 CDL . . . DA 30 175.46 181.062 148.273 1 92.24 ? CB5 CDL 201 V 1 
HETATM 60 O OB7 CDL . . . DA 30 175.005 180.632 149.279 1 92.32 ? OB7 CDL 201 V 1 
HETATM 61 C C51 CDL . . . DA 30 176.365 180.177 147.392 1 88.43 ? C51 CDL 201 V 1 
HETATM 62 C C52 CDL . . . DA 30 176.11 180.419 145.895 1 83.19 ? C52 CDL 201 V 1 
HETATM 63 C C53 CDL . . . DA 30 177.163 179.746 145.003 1 84.83 ? C53 CDL 201 V 1 
HETATM 64 C C54 CDL . . . DA 30 176.992 178.213 144.961 1 86.31 ? C54 CDL 201 V 1 
HETATM 65 C C55 CDL . . . DA 30 176.601 177.708 143.563 1 86.63 ? C55 CDL 201 V 1 
HETATM 66 C C56 CDL . . . DA 30 175.303 178.378 143.042 1 84.76 ? C56 CDL 201 V 1 
HETATM 67 C C57 CDL . . . DA 30 175.409 178.794 141.561 1 84.2 ? C57 CDL 201 V 1 
HETATM 68 C C58 CDL . . . DA 30 174.191 178.314 140.736 1 83.41 ? C58 CDL 201 V 1 
HETATM 69 C C59 CDL . . . DA 30 174.463 178.341 139.213 1 85.34 ? C59 CDL 201 V 1 
HETATM 70 C C60 CDL . . . DA 30 174.758 179.765 138.708 1 88.15 ? C60 CDL 201 V 1 
HETATM 71 C C61 CDL . . . DA 30 173.659 180.309 137.755 1 89.96 ? C61 CDL 201 V 1 
HETATM 72 C C62 CDL . . . DA 30 172.958 179.199 136.942 1 86.54 ? C62 CDL 201 V 1 
HETATM 73 C C63 CDL . . . DA 30 172.404 179.727 135.611 1 85.14 ? C63 CDL 201 V 1 
HETATM 74 C C64 CDL . . . DA 30 171.852 178.615 134.704 1 90.41 ? C64 CDL 201 V 1 
HETATM 75 C C65 CDL . . . DA 30 172.444 177.246 135.016 1 89.33 ? C65 CDL 201 V 1 
HETATM 76 C C66 CDL . . . DA 30 171.906 176.162 134.091 1 87.05 ? C66 CDL 201 V 1 
HETATM 77 C C67 CDL . . . DA 30 172.961 175.104 133.778 1 84.8 ? C67 CDL 201 V 1 
HETATM 78 C CB6 CDL . . . DA 30 173.16 182.57 146.58 1 88.09 ? CB6 CDL 201 V 1 
HETATM 79 O OB8 CDL . . . DA 30 174.095 182.984 145.589 1 92.96 ? OB8 CDL 201 V 1 
HETATM 80 C CB7 CDL . . . DA 30 173.492 183.487 144.41 1 89.86 ? CB7 CDL 201 V 1 
HETATM 81 O OB9 CDL . . . DA 30 172.941 184.537 144.428 1 94.08 ? OB9 CDL 201 V 1 
HETATM 82 C C71 CDL . . . DA 30 173.551 182.668 143.099 1 84.75 ? C71 CDL 201 V 1 
HETATM 83 C C72 CDL . . . DA 30 173.814 183.548 141.869 1 88.15 ? C72 CDL 201 V 1 
HETATM 84 C C73 CDL . . . DA 30 173.738 182.745 140.56 1 87.75 ? C73 CDL 201 V 1 
HETATM 85 C C74 CDL . . . DA 30 172.828 183.402 139.51 1 88.57 ? C74 CDL 201 V 1 
HETATM 86 C C75 CDL . . . DA 30 173.63 184.229 138.469 1 89.74 ? C75 CDL 201 V 1 
HETATM 87 C C76 CDL . . . DA 30 172.713 185.003 137.486 1 90.44 ? C76 CDL 201 V 1 
HETATM 88 C C77 CDL . . . DA 30 172.799 184.45 136.032 1 90.84 ? C77 CDL 201 V 1 
HETATM 89 C C78 CDL . . . DA 30 171.443 184.467 135.313 1 89.48 ? C78 CDL 201 V 1 
HETATM 90 C C79 CDL . . . DA 30 171.458 183.616 134.025 1 89.64 ? C79 CDL 201 V 1 
HETATM 91 C C80 CDL . . . DA 30 170.197 183.834 133.149 1 91.37 ? C80 CDL 201 V 1 
HETATM 92 C C81 CDL . . . DA 30 170.056 185.277 132.665 1 94.14 ? C81 CDL 201 V 1 
HETATM 93 C C82 CDL . . . DA 30 168.683 185.538 131.979 1 89.08 ? C82 CDL 201 V 1 
HETATM 94 C C83 CDL . . . DA 30 168.611 186.929 131.321 1 85.44 ? C83 CDL 201 V 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           94 
#