data_7VXS # _model_server_result.job_id IK0gs4VyqXCqib8gYFLLYg _model_server_result.datetime_utc '2024-12-21 16:54:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":201}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . HA 30 250.424 192.46 113.578 1 85.27 ? C1 CDL 201 a 1 HETATM 2 O O1 CDL . . . HA 30 250.468 191.335 112.752 1 85.78 ? O1 CDL 201 a 1 HETATM 3 C CA2 CDL . . . HA 30 251.71 192.465 114.443 1 84.76 ? CA2 CDL 201 a 1 HETATM 4 O OA2 CDL . . . HA 30 252.624 193.388 113.865 1 86.92 ? OA2 CDL 201 a 1 HETATM 5 P PA1 CDL . . . HA 30 254.241 193.023 113.881 1 93.54 ? PA1 CDL 201 a 1 HETATM 6 O OA3 CDL . . . HA 30 254.563 192.114 112.722 1 85.53 ? OA3 CDL 201 a 1 HETATM 7 O OA4 CDL . . . HA 30 255.042 194.284 113.761 1 87.51 ? OA4 CDL 201 a 1 HETATM 8 O OA5 CDL . . . HA 30 254.621 192.266 115.308 1 81.47 ? OA5 CDL 201 a 1 HETATM 9 C CA3 CDL . . . HA 30 254.656 193.05 116.488 1 83.26 ? CA3 CDL 201 a 1 HETATM 10 C CA4 CDL . . . HA 30 255.181 192.186 117.623 1 82.97 ? CA4 CDL 201 a 1 HETATM 11 O OA6 CDL . . . HA 30 254.614 192.608 118.832 1 85.28 ? OA6 CDL 201 a 1 HETATM 12 C CA5 CDL . . . HA 30 253.367 191.999 119.142 1 84.25 ? CA5 CDL 201 a 1 HETATM 13 O OA7 CDL . . . HA 30 252.968 191.083 118.492 1 88.14 ? OA7 CDL 201 a 1 HETATM 14 C C11 CDL . . . HA 30 252.52 192.534 120.337 1 82.48 ? C11 CDL 201 a 1 HETATM 15 C C12 CDL . . . HA 30 252.695 191.68 121.597 1 82.27 ? C12 CDL 201 a 1 HETATM 16 C C13 CDL . . . HA 30 251.376 191.077 122.072 1 82.05 ? C13 CDL 201 a 1 HETATM 17 C C14 CDL . . . HA 30 251.228 191.128 123.604 1 81.47 ? C14 CDL 201 a 1 HETATM 18 C C15 CDL . . . HA 30 249.739 191.216 124.045 1 85.12 ? C15 CDL 201 a 1 HETATM 19 C C16 CDL . . . HA 30 249.504 190.598 125.445 1 86.97 ? C16 CDL 201 a 1 HETATM 20 C C17 CDL . . . HA 30 248.057 190.04 125.608 1 88.62 ? C17 CDL 201 a 1 HETATM 21 C C18 CDL . . . HA 30 248.039 188.618 126.223 1 89.16 ? C18 CDL 201 a 1 HETATM 22 C C19 CDL . . . HA 30 246.725 188.322 127.001 1 82.72 ? C19 CDL 201 a 1 HETATM 23 C C20 CDL . . . HA 30 246.978 188.109 128.513 1 81.78 ? C20 CDL 201 a 1 HETATM 24 C C21 CDL . . . HA 30 247.752 189.291 129.155 1 84.04 ? C21 CDL 201 a 1 HETATM 25 C C22 CDL . . . HA 30 248.049 189.059 130.663 1 85.51 ? C22 CDL 201 a 1 HETATM 26 C C23 CDL . . . HA 30 248.869 190.21 131.291 1 86.86 ? C23 CDL 201 a 1 HETATM 27 C C24 CDL . . . HA 30 250.392 189.918 131.32 1 88.64 ? C24 CDL 201 a 1 HETATM 28 C C25 CDL . . . HA 30 251.102 190.325 130.016 1 87.13 ? C25 CDL 201 a 1 HETATM 29 C C26 CDL . . . HA 30 252.639 190.204 130.122 1 86.74 ? C26 CDL 201 a 1 HETATM 30 C C27 CDL . . . HA 30 253.209 191.009 131.296 1 83.72 ? C27 CDL 201 a 1 HETATM 31 C CA6 CDL . . . HA 30 256.709 192.345 117.7 1 82.51 ? CA6 CDL 201 a 1 HETATM 32 O OA8 CDL . . . HA 30 257.009 193.719 117.564 1 87.46 ? OA8 CDL 201 a 1 HETATM 33 C CA7 CDL . . . HA 30 258.234 194.107 118.189 1 87.9 ? CA7 CDL 201 a 1 HETATM 34 O OA9 CDL . . . HA 30 258.801 193.351 118.899 1 89.02 ? OA9 CDL 201 a 1 HETATM 35 C C31 CDL . . . HA 30 258.813 195.513 117.944 1 83.06 ? C31 CDL 201 a 1 HETATM 36 C C32 CDL . . . HA 30 258.481 196.478 119.078 1 83.05 ? C32 CDL 201 a 1 HETATM 37 C C33 CDL . . . HA 30 259.729 197.197 119.611 1 84.27 ? C33 CDL 201 a 1 HETATM 38 C C34 CDL . . . HA 30 260.657 197.681 118.472 1 85.58 ? C34 CDL 201 a 1 HETATM 39 C C35 CDL . . . HA 30 261.234 199.093 118.749 1 83.87 ? C35 CDL 201 a 1 HETATM 40 C C36 CDL . . . HA 30 262.779 199.088 118.829 1 82.81 ? C36 CDL 201 a 1 HETATM 41 C C37 CDL . . . HA 30 263.3 198.376 120.087 1 85.92 ? C37 CDL 201 a 1 HETATM 42 C C38 CDL . . . HA 30 264.567 197.558 119.808 1 84.23 ? C38 CDL 201 a 1 HETATM 43 C C39 CDL . . . HA 30 265.598 198.352 118.984 1 82.84 ? C39 CDL 201 a 1 HETATM 44 C C40 CDL . . . HA 30 266.958 198.48 119.705 1 85.83 ? C40 CDL 201 a 1 HETATM 45 C C41 CDL . . . HA 30 267.93 197.298 119.364 1 88.47 ? C41 CDL 201 a 1 HETATM 46 C C42 CDL . . . HA 30 268.633 197.492 117.993 1 88 ? C42 CDL 201 a 1 HETATM 47 C C43 CDL . . . HA 30 269.667 198.655 118.011 1 87.89 ? C43 CDL 201 a 1 HETATM 48 C C44 CDL . . . HA 30 270.776 198.447 119.076 1 87.14 ? C44 CDL 201 a 1 HETATM 49 C C45 CDL . . . HA 30 271.922 199.444 118.92 1 87.66 ? C45 CDL 201 a 1 HETATM 50 C C46 CDL . . . HA 30 271.616 200.803 119.579 1 88.02 ? C46 CDL 201 a 1 HETATM 51 C C47 CDL . . . HA 30 272.272 201.965 118.837 1 82.36 ? C47 CDL 201 a 1 HETATM 52 C CB2 CDL . . . HA 30 249.104 192.384 114.419 1 84.47 ? CB2 CDL 201 a 1 HETATM 53 O OB2 CDL . . . HA 30 249.407 191.875 115.71 1 87.71 ? OB2 CDL 201 a 1 HETATM 54 P PB2 CDL . . . HA 30 248.125 191.563 116.747 1 90.43 ? PB2 CDL 201 a 1 HETATM 55 O OB3 CDL . . . HA 30 246.824 191.631 115.97 1 86.87 ? OB3 CDL 201 a 1 HETATM 56 O OB4 CDL . . . HA 30 248.283 190.183 117.337 1 82.47 ? OB4 CDL 201 a 1 HETATM 57 O OB5 CDL . . . HA 30 248.103 192.701 117.977 1 87.77 ? OB5 CDL 201 a 1 HETATM 58 C CB3 CDL . . . HA 30 248.359 192.264 119.305 1 82.7 ? CB3 CDL 201 a 1 HETATM 59 C CB4 CDL . . . HA 30 247.998 193.399 120.273 1 85.89 ? CB4 CDL 201 a 1 HETATM 60 O OB6 CDL . . . HA 30 249.03 193.546 121.219 1 93.65 ? OB6 CDL 201 a 1 HETATM 61 C CB5 CDL . . . HA 30 249.146 194.855 121.769 1 88.44 ? CB5 CDL 201 a 1 HETATM 62 O OB7 CDL . . . HA 30 248.781 195.065 122.877 1 86.3 ? OB7 CDL 201 a 1 HETATM 63 C C51 CDL . . . HA 30 249.752 195.999 120.933 1 85.02 ? C51 CDL 201 a 1 HETATM 64 C C52 CDL . . . HA 30 249.846 197.313 121.729 1 85.99 ? C52 CDL 201 a 1 HETATM 65 C C53 CDL . . . HA 30 250.568 198.423 120.948 1 85.13 ? C53 CDL 201 a 1 HETATM 66 C C54 CDL . . . HA 30 250.133 199.831 121.407 1 84.05 ? C54 CDL 201 a 1 HETATM 67 C C55 CDL . . . HA 30 251.323 200.777 121.626 1 83.72 ? C55 CDL 201 a 1 HETATM 68 C C56 CDL . . . HA 30 251.002 201.892 122.658 1 85.5 ? C56 CDL 201 a 1 HETATM 69 C C57 CDL . . . HA 30 250.344 203.128 122.009 1 84.5 ? C57 CDL 201 a 1 HETATM 70 C C58 CDL . . . HA 30 249.426 203.89 122.995 1 86.01 ? C58 CDL 201 a 1 HETATM 71 C C59 CDL . . . HA 30 248.496 204.898 122.276 1 84.21 ? C59 CDL 201 a 1 HETATM 72 C C60 CDL . . . HA 30 247.464 205.528 123.23 1 81.36 ? C60 CDL 201 a 1 HETATM 73 C C61 CDL . . . HA 30 248.078 206.648 124.114 1 81.13 ? C61 CDL 201 a 1 HETATM 74 C C62 CDL . . . HA 30 247.066 207.225 125.128 1 84.5 ? C62 CDL 201 a 1 HETATM 75 C C63 CDL . . . HA 30 247.364 206.803 126.576 1 89.12 ? C63 CDL 201 a 1 HETATM 76 C C64 CDL . . . HA 30 247.068 205.317 126.835 1 94.2 ? C64 CDL 201 a 1 HETATM 77 C C65 CDL . . . HA 30 248.335 204.503 127.073 1 92.24 ? C65 CDL 201 a 1 HETATM 78 C C66 CDL . . . HA 30 248.041 203.022 127.286 1 83.24 ? C66 CDL 201 a 1 HETATM 79 C C67 CDL . . . HA 30 249.13 202.124 126.702 1 80.18 ? C67 CDL 201 a 1 HETATM 80 C CB6 CDL . . . HA 30 246.7 193.049 120.993 1 88.29 ? CB6 CDL 201 a 1 HETATM 81 O OB8 CDL . . . HA 30 246.812 191.721 121.496 1 91.25 ? OB8 CDL 201 a 1 HETATM 82 C CB7 CDL . . . HA 30 245.568 191.096 121.756 1 89.56 ? CB7 CDL 201 a 1 HETATM 83 O OB9 CDL . . . HA 30 244.685 191.194 120.969 1 94.84 ? OB9 CDL 201 a 1 HETATM 84 C C71 CDL . . . HA 30 245.354 190.286 123.056 1 81.94 ? C71 CDL 201 a 1 HETATM 85 C C72 CDL . . . HA 30 244.14 190.786 123.853 1 81.2 ? C72 CDL 201 a 1 HETATM 86 C C73 CDL . . . HA 30 243.954 190.04 125.186 1 85.39 ? C73 CDL 201 a 1 HETATM 87 C C74 CDL . . . HA 30 243.741 191.002 126.366 1 87.48 ? C74 CDL 201 a 1 HETATM 88 C C75 CDL . . . HA 30 243.021 190.32 127.562 1 87.25 ? C75 CDL 201 a 1 HETATM 89 C C76 CDL . . . HA 30 243.874 190.319 128.858 1 86.6 ? C76 CDL 201 a 1 HETATM 90 C C77 CDL . . . HA 30 243.591 189.077 129.755 1 80.65 ? C77 CDL 201 a 1 HETATM 91 C C78 CDL . . . HA 30 242.936 189.455 131.091 1 80.4 ? C78 CDL 201 a 1 HETATM 92 C C79 CDL . . . HA 30 243.736 190.532 131.854 1 82.67 ? C79 CDL 201 a 1 HETATM 93 C C80 CDL . . . HA 30 242.992 191.043 133.115 1 82.82 ? C80 CDL 201 a 1 HETATM 94 C C81 CDL . . . HA 30 243.867 191.958 133.973 1 85.27 ? C81 CDL 201 a 1 HETATM 95 C C82 CDL . . . HA 30 243.151 192.41 135.28 1 85.87 ? C82 CDL 201 a 1 HETATM 96 C C83 CDL . . . HA 30 244.118 193.072 136.281 1 89.7 ? C83 CDL 201 a 1 HETATM 97 C C84 CDL . . . HA 30 245.16 192.071 136.839 1 90.01 ? C84 CDL 201 a 1 HETATM 98 C C85 CDL . . . HA 30 246.447 192.771 137.317 1 88.09 ? C85 CDL 201 a 1 HETATM 99 C C86 CDL . . . HA 30 247.618 191.796 137.47 1 86.29 ? C86 CDL 201 a 1 HETATM 100 C C87 CDL . . . HA 30 248.411 191.64 136.173 1 83.74 ? C87 CDL 201 a 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 162 _model_server_stats.query_time_ms 586 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 100 #