data_7VXS
#
_model_server_result.job_id            45jWCemGT0e7he_nqRBc2Q 
_model_server_result.datetime_utc      '2024-12-30 17:40:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":201}' 
#
_entry.id    7VXS 
#
_exptl.entry_id    7VXS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VXS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 JA N N 
? 33 NA N N 
? 33 OA N N 
? 33 UA N N 
? 33 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VXS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 CDL V 1 201 201 CDL CDL . 
EA 30 CDL V 1 202 203 CDL CDL . 
FA 31 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 30 CDL a 1 201 201 CDL CDL . 
IA 31 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 30 CDL i 1 401 401 CDL CDL . 
LA 31 PEE i 1 402 718 PEE PEE . 
MA 31 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 PEE l 1 701 207 PEE PEE . 
QA 30 CDL l 1 702 712 CDL CDL . 
RA 30 CDL l 1 703 713 CDL CDL . 
SA 31 PEE l 1 704 719 PEE PEE . 
TA 30 CDL m 1 201 101 CDL CDL . 
UA 33 PLX n 1 101 101 PLX PLX . 
VA 30 CDL n 1 102 102 CDL CDL . 
WA 31 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 201 PLX PLX . 
YA 30 CDL r 1 503 714 CDL CDL . 
ZA 31 PEE s 1 401 201 PEE PEE . 
AB 30 CDL s 1 402 201 CDL CDL . 
BB 31 PEE s 1 403 401 PEE PEE . 
CB 34 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . JA 33 199.164 159.985 131.052 1 79.19 ? C23 PLX 201 g 1 
HETATM 2 C C22 PLX . . . JA 33 199.669 158.514 131.13 1 78.59 ? C22 PLX 201 g 1 
HETATM 3 C C21 PLX . . . JA 33 198.541 157.484 130.798 1 78.74 ? C21 PLX 201 g 1 
HETATM 4 C C20 PLX . . . JA 33 199.081 156.017 130.753 1 80.84 ? C20 PLX 201 g 1 
HETATM 5 C C19 PLX . . . JA 33 197.932 154.96 130.641 1 82.8 ? C19 PLX 201 g 1 
HETATM 6 C C18 PLX . . . JA 33 198.372 153.555 131.194 1 84.36 ? C18 PLX 201 g 1 
HETATM 7 C C17 PLX . . . JA 33 199.658 153.001 130.462 1 87 ? C17 PLX 201 g 1 
HETATM 8 C C16 PLX . . . JA 33 199.881 151.472 130.73 1 85.09 ? C16 PLX 201 g 1 
HETATM 9 C C15 PLX . . . JA 33 198.574 150.629 130.475 1 79.92 ? C15 PLX 201 g 1 
HETATM 10 C C14 PLX . . . JA 33 198.766 149.559 129.347 1 80.1 ? C14 PLX 201 g 1 
HETATM 11 C C13 PLX . . . JA 33 198.185 150.046 127.967 1 80.8 ? C13 PLX 201 g 1 
HETATM 12 C C12 PLX . . . JA 33 197.304 148.954 127.273 1 85.23 ? C12 PLX 201 g 1 
HETATM 13 C C11 PLX . . . JA 33 195.807 149.398 127.144 1 83.33 ? C11 PLX 201 g 1 
HETATM 14 C C10 PLX . . . JA 33 195.175 149.022 125.765 1 81.31 ? C10 PLX 201 g 1 
HETATM 15 C C9 PLX . . . JA 33 196.029 147.975 124.958 1 77.57 ? C9 PLX 201 g 1 
HETATM 16 C C8 PLX . . . JA 33 195.139 146.878 124.257 1 75.68 ? C8 PLX 201 g 1 
HETATM 17 C C7 PLX . . . JA 33 193.645 147.345 124.048 1 79.94 ? C7 PLX 201 g 1 
HETATM 18 C C6 PLX . . . JA 33 193.415 147.99 122.655 1 87.04 ? C6 PLX 201 g 1 
HETATM 19 O O7 PLX . . . JA 33 192.707 147.117 121.859 1 90.41 ? O7 PLX 201 g 1 
HETATM 20 O O6 PLX . . . JA 33 192.685 149.198 122.796 1 85.78 ? O6 PLX 201 g 1 
HETATM 21 C C4 PLX . . . JA 33 192.391 149.826 121.573 1 79.12 ? C4 PLX 201 g 1 
HETATM 22 C C3 PLX . . . JA 33 190.962 150.389 121.61 1 79.14 ? C3 PLX 201 g 1 
HETATM 23 O O4 PLX . . . JA 33 190.598 150.758 120.277 1 82.17 ? O4 PLX 201 g 1 
HETATM 24 P P1 PLX . . . JA 33 189.057 151.352 119.994 1 102.16 ? P1 PLX 201 g 1 
HETATM 25 O O1 PLX . . . JA 33 188.759 152.671 120.973 1 91.26 ? O1 PLX 201 g 1 
HETATM 26 C C2 PLX . . . JA 33 187.393 153.016 121.219 1 81.9 ? C2 PLX 201 g 1 
HETATM 27 C C1 PLX . . . JA 33 187.348 154.321 122.086 1 77.33 ? C1 PLX 201 g 1 
HETATM 28 N N1 PLX . . . JA 33 187.812 155.518 121.307 1 83.86 ? N1 PLX 201 g 1 
HETATM 29 C C1C PLX . . . JA 33 186.869 156.612 121.607 1 84.69 ? C1C PLX 201 g 1 
HETATM 30 C C1B PLX . . . JA 33 189.176 155.837 121.822 1 80.26 ? C1B PLX 201 g 1 
HETATM 31 C C1A PLX . . . JA 33 187.914 155.459 119.826 1 80.44 ? C1A PLX 201 g 1 
HETATM 32 O O2 PLX . . . JA 33 188.021 150.289 120.286 1 85.61 ? O2 PLX 201 g 1 
HETATM 33 C C5 PLX . . . JA 33 193.384 150.978 121.334 1 79.75 ? C5 PLX 201 g 1 
HETATM 34 O O8 PLX . . . JA 33 194.018 151.291 122.576 1 88.87 ? O8 PLX 201 g 1 
HETATM 35 C C24 PLX . . . JA 33 193.637 152.532 123.134 1 84.89 ? C24 PLX 201 g 1 
HETATM 36 O O9 PLX . . . JA 33 192.668 153.134 122.342 1 83.72 ? O9 PLX 201 g 1 
HETATM 37 C C25 PLX . . . JA 33 194.87 153.454 123.225 1 79.95 ? C25 PLX 201 g 1 
HETATM 38 C C26 PLX . . . JA 33 195.827 153.049 124.39 1 77.31 ? C26 PLX 201 g 1 
HETATM 39 C C27 PLX . . . JA 33 197.129 153.909 124.406 1 78.84 ? C27 PLX 201 g 1 
HETATM 40 C C28 PLX . . . JA 33 197.306 154.692 125.751 1 79.06 ? C28 PLX 201 g 1 
HETATM 41 C C29 PLX . . . JA 33 198.417 155.786 125.651 1 77.2 ? C29 PLX 201 g 1 
HETATM 42 C C30 PLX . . . JA 33 197.82 157.243 125.626 1 76.29 ? C30 PLX 201 g 1 
HETATM 43 C C31 PLX . . . JA 33 198.535 158.189 126.662 1 77.85 ? C31 PLX 201 g 1 
HETATM 44 C C32 PLX . . . JA 33 198.378 159.717 126.298 1 82.32 ? C32 PLX 201 g 1 
HETATM 45 C C33 PLX . . . JA 33 199.685 160.324 125.646 1 78.38 ? C33 PLX 201 g 1 
HETATM 46 C C34 PLX . . . JA 33 200.708 160.851 126.729 1 77.3 ? C34 PLX 201 g 1 
HETATM 47 C C35 PLX . . . JA 33 202.018 159.958 126.785 1 79.53 ? C35 PLX 201 g 1 
HETATM 48 C C36 PLX . . . JA 33 201.884 158.78 127.812 1 79.71 ? C36 PLX 201 g 1 
HETATM 49 C C37 PLX . . . JA 33 203.146 157.846 127.829 1 74.32 ? C37 PLX 201 g 1 
HETATM 50 C C38 PLX . . . JA 33 202.895 156.552 128.665 1 83.4 ? C38 PLX 201 g 1 
HETATM 51 C C39 PLX . . . JA 33 204.212 155.917 129.177 1 82.42 ? C39 PLX 201 g 1 
HETATM 52 O O3 PLX . . . JA 33 188.944 151.765 118.541 1 75.8 ? O3 PLX 201 g 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           52 
#