data_7VXS # _model_server_result.job_id cuwkj4UmjpR0ersbz7PmbQ _model_server_result.datetime_utc '2024-12-21 17:04:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":201}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . TA 30 156.997 176.129 156.088 1 96.61 ? C1 CDL 201 m 1 HETATM 2 O O1 CDL . . . TA 30 155.898 175.916 155.254 1 98.26 ? O1 CDL 201 m 1 HETATM 3 C CA2 CDL . . . TA 30 157.445 177.604 155.922 1 99.62 ? CA2 CDL 201 m 1 HETATM 4 O OA2 CDL . . . TA 30 158.856 177.678 156.076 1 103.2 ? OA2 CDL 201 m 1 HETATM 5 P PA1 CDL . . . TA 30 159.496 179.078 156.694 1 116.84 ? PA1 CDL 201 m 1 HETATM 6 O OA3 CDL . . . TA 30 158.426 180.141 156.729 1 99.92 ? OA3 CDL 201 m 1 HETATM 7 O OA4 CDL . . . TA 30 160.004 178.829 158.083 1 94.27 ? OA4 CDL 201 m 1 HETATM 8 O OA5 CDL . . . TA 30 160.748 179.587 155.728 1 100.62 ? OA5 CDL 201 m 1 HETATM 9 C CA3 CDL . . . TA 30 160.576 180.779 154.978 1 95.27 ? CA3 CDL 201 m 1 HETATM 10 C CA4 CDL . . . TA 30 159.869 180.423 153.677 1 95.51 ? CA4 CDL 201 m 1 HETATM 11 O OA6 CDL . . . TA 30 159.991 179.043 153.424 1 97.77 ? OA6 CDL 201 m 1 HETATM 12 C CA5 CDL . . . TA 30 161.159 178.603 152.733 1 99.63 ? CA5 CDL 201 m 1 HETATM 13 O OA7 CDL . . . TA 30 162.252 178.851 153.143 1 101.52 ? OA7 CDL 201 m 1 HETATM 14 C C11 CDL . . . TA 30 161.001 177.767 151.425 1 93.84 ? C11 CDL 201 m 1 HETATM 15 C C12 CDL . . . TA 30 161.289 178.586 150.163 1 88.98 ? C12 CDL 201 m 1 HETATM 16 C C13 CDL . . . TA 30 160.58 178.009 148.94 1 92.61 ? C13 CDL 201 m 1 HETATM 17 C C14 CDL . . . TA 30 159.538 178.982 148.357 1 94.07 ? C14 CDL 201 m 1 HETATM 18 C C15 CDL . . . TA 30 158.703 178.335 147.214 1 93.06 ? C15 CDL 201 m 1 HETATM 19 C C16 CDL . . . TA 30 159.562 177.428 146.298 1 97.47 ? C16 CDL 201 m 1 HETATM 20 C C17 CDL . . . TA 30 159.371 177.759 144.786 1 99.59 ? C17 CDL 201 m 1 HETATM 21 C C18 CDL . . . TA 30 160.674 177.551 143.973 1 95.99 ? C18 CDL 201 m 1 HETATM 22 C C19 CDL . . . TA 30 161.925 178.128 144.697 1 94.11 ? C19 CDL 201 m 1 HETATM 23 C C20 CDL . . . TA 30 162.192 179.61 144.338 1 94.87 ? C20 CDL 201 m 1 HETATM 24 C C21 CDL . . . TA 30 161.568 180.588 145.368 1 93.81 ? C21 CDL 201 m 1 HETATM 25 C C22 CDL . . . TA 30 160.887 181.808 144.685 1 95.5 ? C22 CDL 201 m 1 HETATM 26 C C23 CDL . . . TA 30 161.846 183.008 144.517 1 94.24 ? C23 CDL 201 m 1 HETATM 27 C C24 CDL . . . TA 30 161.298 184.053 143.511 1 92.87 ? C24 CDL 201 m 1 HETATM 28 C C25 CDL . . . TA 30 161.13 183.459 142.102 1 94.46 ? C25 CDL 201 m 1 HETATM 29 C C26 CDL . . . TA 30 160.209 184.318 141.207 1 96.03 ? C26 CDL 201 m 1 HETATM 30 C C27 CDL . . . TA 30 158.792 184.438 141.778 1 94.99 ? C27 CDL 201 m 1 HETATM 31 C CA6 CDL . . . TA 30 160.448 181.259 152.516 1 96.45 ? CA6 CDL 201 m 1 HETATM 32 O OA8 CDL . . . TA 30 159.393 181.642 151.658 1 98.9 ? OA8 CDL 201 m 1 HETATM 33 C CA7 CDL . . . TA 30 159.709 182.773 150.842 1 94.98 ? CA7 CDL 201 m 1 HETATM 34 O OA9 CDL . . . TA 30 160.595 183.49 151.15 1 93.77 ? OA9 CDL 201 m 1 HETATM 35 C C31 CDL . . . TA 30 158.899 183.061 149.565 1 92.02 ? C31 CDL 201 m 1 HETATM 36 C C32 CDL . . . TA 30 159.66 183.962 148.597 1 91.17 ? C32 CDL 201 m 1 HETATM 37 C C33 CDL . . . TA 30 159.082 183.909 147.175 1 93.42 ? C33 CDL 201 m 1 HETATM 38 C C34 CDL . . . TA 30 159.172 185.275 146.456 1 96.96 ? C34 CDL 201 m 1 HETATM 39 C C35 CDL . . . TA 30 157.773 185.905 146.224 1 96.6 ? C35 CDL 201 m 1 HETATM 40 C C36 CDL . . . TA 30 157.642 186.553 144.826 1 95.68 ? C36 CDL 201 m 1 HETATM 41 C C37 CDL . . . TA 30 157.694 188.09 144.872 1 94.71 ? C37 CDL 201 m 1 HETATM 42 C C38 CDL . . . TA 30 158.154 188.697 143.54 1 95.82 ? C38 CDL 201 m 1 HETATM 43 C C39 CDL . . . TA 30 157.673 187.88 142.324 1 95.6 ? C39 CDL 201 m 1 HETATM 44 C C40 CDL . . . TA 30 157.606 188.716 141.028 1 95.52 ? C40 CDL 201 m 1 HETATM 45 C C41 CDL . . . TA 30 156.976 187.913 139.837 1 96.55 ? C41 CDL 201 m 1 HETATM 46 C C42 CDL . . . TA 30 157.358 188.508 138.454 1 94.52 ? C42 CDL 201 m 1 HETATM 47 C C43 CDL . . . TA 30 156.826 189.957 138.257 1 95.1 ? C43 CDL 201 m 1 HETATM 48 C C44 CDL . . . TA 30 157.916 190.917 137.71 1 97.45 ? C44 CDL 201 m 1 HETATM 49 C C45 CDL . . . TA 30 158.812 191.469 138.817 1 98.19 ? C45 CDL 201 m 1 HETATM 50 C C46 CDL . . . TA 30 158.008 192.162 139.935 1 95.51 ? C46 CDL 201 m 1 HETATM 51 C C47 CDL . . . TA 30 158.793 192.256 141.24 1 92.62 ? C47 CDL 201 m 1 HETATM 52 C CB2 CDL . . . TA 30 158.107 175.092 155.702 1 93.63 ? CB2 CDL 201 m 1 HETATM 53 O OB2 CDL . . . TA 30 157.505 173.804 155.68 1 98.08 ? OB2 CDL 201 m 1 HETATM 54 P PB2 CDL . . . TA 30 158.309 172.547 154.913 1 99.19 ? PB2 CDL 201 m 1 HETATM 55 O OB3 CDL . . . TA 30 159.806 172.741 155.062 1 98.83 ? OB3 CDL 201 m 1 HETATM 56 O OB4 CDL . . . TA 30 157.906 171.236 155.545 1 92.99 ? OB4 CDL 201 m 1 HETATM 57 O OB5 CDL . . . TA 30 157.908 172.533 153.285 1 91.51 ? OB5 CDL 201 m 1 HETATM 58 C CB3 CDL . . . TA 30 158.952 172.398 152.33 1 89.48 ? CB3 CDL 201 m 1 HETATM 59 C CB4 CDL . . . TA 30 158.365 172.655 150.935 1 92.39 ? CB4 CDL 201 m 1 HETATM 60 O OB6 CDL . . . TA 30 157.329 173.601 151.033 1 100.82 ? OB6 CDL 201 m 1 HETATM 61 C CB5 CDL . . . TA 30 157.729 174.918 150.67 1 97.54 ? CB5 CDL 201 m 1 HETATM 62 O OB7 CDL . . . TA 30 158.852 175.129 150.353 1 101.52 ? OB7 CDL 201 m 1 HETATM 63 C C51 CDL . . . TA 30 156.705 176.07 150.692 1 90.65 ? C51 CDL 201 m 1 HETATM 64 C C52 CDL . . . TA 30 155.316 175.615 150.212 1 87.91 ? C52 CDL 201 m 1 HETATM 65 C C53 CDL . . . TA 30 155.345 175.094 148.768 1 89.02 ? C53 CDL 201 m 1 HETATM 66 C C54 CDL . . . TA 30 153.929 174.873 148.197 1 92.28 ? C54 CDL 201 m 1 HETATM 67 C C55 CDL . . . TA 30 153.841 175.262 146.714 1 93.65 ? C55 CDL 201 m 1 HETATM 68 C C56 CDL . . . TA 30 154.698 174.323 145.825 1 92.07 ? C56 CDL 201 m 1 HETATM 69 C C57 CDL . . . TA 30 154.301 174.398 144.336 1 91.66 ? C57 CDL 201 m 1 HETATM 70 C C58 CDL . . . TA 30 155.427 175.01 143.468 1 96.1 ? C58 CDL 201 m 1 HETATM 71 C C59 CDL . . . TA 30 156.59 174.017 143.226 1 96.46 ? C59 CDL 201 m 1 HETATM 72 C C60 CDL . . . TA 30 157.593 174.525 142.172 1 93.31 ? C60 CDL 201 m 1 HETATM 73 C C61 CDL . . . TA 30 157.039 174.41 140.726 1 91.44 ? C61 CDL 201 m 1 HETATM 74 C C62 CDL . . . TA 30 156.63 175.777 140.136 1 96.01 ? C62 CDL 201 m 1 HETATM 75 C C63 CDL . . . TA 30 155.115 175.876 139.899 1 97.54 ? C63 CDL 201 m 1 HETATM 76 C C64 CDL . . . TA 30 154.743 176.05 138.417 1 93.91 ? C64 CDL 201 m 1 HETATM 77 C C65 CDL . . . TA 30 155.807 176.793 137.619 1 96.01 ? C65 CDL 201 m 1 HETATM 78 C C66 CDL . . . TA 30 155.414 176.961 136.156 1 96.7 ? C66 CDL 201 m 1 HETATM 79 C C67 CDL . . . TA 30 156.017 175.874 135.267 1 94.24 ? C67 CDL 201 m 1 HETATM 80 C CB6 CDL . . . TA 30 157.825 171.35 150.363 1 86.31 ? CB6 CDL 201 m 1 HETATM 81 O OB8 CDL . . . TA 30 156.658 171.611 149.588 1 92.52 ? OB8 CDL 201 m 1 HETATM 82 C CB7 CDL . . . TA 30 156.355 170.581 148.662 1 89.53 ? CB7 CDL 201 m 1 HETATM 83 O OB9 CDL . . . TA 30 156.585 169.452 148.941 1 87.56 ? OB9 CDL 201 m 1 HETATM 84 C C71 CDL . . . TA 30 155.719 170.918 147.293 1 89.93 ? C71 CDL 201 m 1 HETATM 85 C C72 CDL . . . TA 30 155.624 169.688 146.379 1 86.53 ? C72 CDL 201 m 1 HETATM 86 C C73 CDL . . . TA 30 154.967 170.001 145.024 1 89.33 ? C73 CDL 201 m 1 HETATM 87 C C74 CDL . . . TA 30 153.742 169.112 144.758 1 86.45 ? C74 CDL 201 m 1 HETATM 88 C C75 CDL . . . TA 30 153.033 169.419 143.409 1 88.63 ? C75 CDL 201 m 1 HETATM 89 C C76 CDL . . . TA 30 153.467 170.769 142.779 1 96.84 ? C76 CDL 201 m 1 HETATM 90 C C77 CDL . . . TA 30 153.317 170.765 141.228 1 97.28 ? C77 CDL 201 m 1 HETATM 91 C C78 CDL . . . TA 30 154.649 171.02 140.507 1 96.87 ? C78 CDL 201 m 1 HETATM 92 C C79 CDL . . . TA 30 154.527 170.844 138.978 1 94.6 ? C79 CDL 201 m 1 HETATM 93 C C80 CDL . . . TA 30 155.552 171.706 138.196 1 95.86 ? C80 CDL 201 m 1 HETATM 94 C C81 CDL . . . TA 30 157.001 171.42 138.593 1 94.66 ? C81 CDL 201 m 1 HETATM 95 C C82 CDL . . . TA 30 157.767 170.622 137.498 1 94.47 ? C82 CDL 201 m 1 HETATM 96 C C83 CDL . . . TA 30 159.296 170.729 137.653 1 91.92 ? C83 CDL 201 m 1 HETATM 97 C C84 CDL . . . TA 30 160.048 169.63 136.863 1 92.07 ? C84 CDL 201 m 1 HETATM 98 C C85 CDL . . . TA 30 160.365 170.058 135.417 1 94.28 ? C85 CDL 201 m 1 HETATM 99 C C86 CDL . . . TA 30 161.206 169.017 134.671 1 95.14 ? C86 CDL 201 m 1 HETATM 100 C C87 CDL . . . TA 30 160.347 167.998 133.924 1 90.2 ? C87 CDL 201 m 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 100 #