data_7VXS # _model_server_result.job_id oj_jhc64RfRucCnlpAyVuQ _model_server_result.datetime_utc '2024-12-21 17:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":202}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . EA 30 184.375 207.932 153.756 1 107.85 ? C1 CDL 202 V 1 HETATM 2 O O1 CDL . . . EA 30 185.368 208.252 154.684 1 108.68 ? O1 CDL 202 V 1 HETATM 3 C CA2 CDL . . . EA 30 183.242 208.985 153.87 1 110.71 ? CA2 CDL 202 V 1 HETATM 4 O OA2 CDL . . . EA 30 183.544 210.073 153.008 1 116.15 ? OA2 CDL 202 V 1 HETATM 5 P PA1 CDL . . . EA 30 182.644 211.458 153.156 1 128.48 ? PA1 CDL 202 V 1 HETATM 6 O OA3 CDL . . . EA 30 181.177 211.108 153.101 1 112.99 ? OA3 CDL 202 V 1 HETATM 7 O OA4 CDL . . . EA 30 182.95 212.113 154.47 1 113.24 ? OA4 CDL 202 V 1 HETATM 8 O OA5 CDL . . . EA 30 183.014 212.501 151.917 1 110.02 ? OA5 CDL 202 V 1 HETATM 9 C CA3 CDL . . . EA 30 183.296 211.952 150.639 1 107.16 ? CA3 CDL 202 V 1 HETATM 10 C CA4 CDL . . . EA 30 182.449 212.684 149.609 1 109.92 ? CA4 CDL 202 V 1 HETATM 11 O OA6 CDL . . . EA 30 182.887 212.35 148.32 1 112.7 ? OA6 CDL 202 V 1 HETATM 12 C CA5 CDL . . . EA 30 181.865 212.384 147.333 1 109.92 ? CA5 CDL 202 V 1 HETATM 13 O OA7 CDL . . . EA 30 180.724 212.501 147.656 1 110.05 ? OA7 CDL 202 V 1 HETATM 14 C C11 CDL . . . EA 30 182.242 212.274 145.822 1 108.11 ? C11 CDL 202 V 1 HETATM 15 C C12 CDL . . . EA 30 181.307 211.339 145.045 1 109.42 ? C12 CDL 202 V 1 HETATM 16 C C13 CDL . . . EA 30 181.704 211.173 143.577 1 109.67 ? C13 CDL 202 V 1 HETATM 17 C C14 CDL . . . EA 30 182.718 212.228 143.09 1 111.16 ? C14 CDL 202 V 1 HETATM 18 C C15 CDL . . . EA 30 183.71 211.654 142.036 1 111.22 ? C15 CDL 202 V 1 HETATM 19 C C16 CDL . . . EA 30 183.821 212.552 140.778 1 109.28 ? C16 CDL 202 V 1 HETATM 20 C C17 CDL . . . EA 30 185.272 213.064 140.524 1 108.71 ? C17 CDL 202 V 1 HETATM 21 C C18 CDL . . . EA 30 186.103 212.075 139.667 1 109.44 ? C18 CDL 202 V 1 HETATM 22 C C19 CDL . . . EA 30 187.283 212.768 138.928 1 110.58 ? C19 CDL 202 V 1 HETATM 23 C C20 CDL . . . EA 30 187.011 212.949 137.414 1 111.07 ? C20 CDL 202 V 1 HETATM 24 C C21 CDL . . . EA 30 188.312 213.218 136.609 1 109.08 ? C21 CDL 202 V 1 HETATM 25 C C22 CDL . . . EA 30 188.105 213.081 135.074 1 110.06 ? C22 CDL 202 V 1 HETATM 26 C C23 CDL . . . EA 30 189.439 212.884 134.318 1 110.5 ? C23 CDL 202 V 1 HETATM 27 C C24 CDL . . . EA 30 190.332 214.152 134.35 1 111.14 ? C24 CDL 202 V 1 HETATM 28 C C25 CDL . . . EA 30 191.825 213.823 134.166 1 112.12 ? C25 CDL 202 V 1 HETATM 29 C C26 CDL . . . EA 30 192.193 213.533 132.692 1 109.93 ? C26 CDL 202 V 1 HETATM 30 C C27 CDL . . . EA 30 192.379 214.816 131.874 1 106.69 ? C27 CDL 202 V 1 HETATM 31 C CA6 CDL . . . EA 30 182.587 214.203 149.821 1 110.15 ? CA6 CDL 202 V 1 HETATM 32 O OA8 CDL . . . EA 30 183.597 214.688 148.958 1 114.19 ? OA8 CDL 202 V 1 HETATM 33 C CA7 CDL . . . EA 30 184.82 215.015 149.622 1 112.37 ? CA7 CDL 202 V 1 HETATM 34 O OA9 CDL . . . EA 30 184.925 214.835 150.786 1 110.12 ? OA9 CDL 202 V 1 HETATM 35 C C31 CDL . . . EA 30 185.997 215.614 148.828 1 111.41 ? C31 CDL 202 V 1 HETATM 36 C C32 CDL . . . EA 30 185.747 215.606 147.322 1 109.29 ? C32 CDL 202 V 1 HETATM 37 C C33 CDL . . . EA 30 186.472 214.45 146.617 1 106.51 ? C33 CDL 202 V 1 HETATM 38 C C34 CDL . . . EA 30 185.661 213.861 145.437 1 110.08 ? C34 CDL 202 V 1 HETATM 39 C C35 CDL . . . EA 30 184.603 214.844 144.868 1 109.33 ? C35 CDL 202 V 1 HETATM 40 C C36 CDL . . . EA 30 184.956 215.329 143.443 1 109.43 ? C36 CDL 202 V 1 HETATM 41 C C37 CDL . . . EA 30 185.709 216.669 143.456 1 109.59 ? C37 CDL 202 V 1 HETATM 42 C C38 CDL . . . EA 30 187.225 216.49 143.322 1 107.68 ? C38 CDL 202 V 1 HETATM 43 C C39 CDL . . . EA 30 187.643 215.994 141.924 1 107.87 ? C39 CDL 202 V 1 HETATM 44 C C40 CDL . . . EA 30 188.48 217.053 141.173 1 108.72 ? C40 CDL 202 V 1 HETATM 45 C C41 CDL . . . EA 30 189.006 216.54 139.789 1 110.84 ? C41 CDL 202 V 1 HETATM 46 C C42 CDL . . . EA 30 189.872 215.258 139.922 1 110.2 ? C42 CDL 202 V 1 HETATM 47 C C43 CDL . . . EA 30 191.133 215.307 139.011 1 110.06 ? C43 CDL 202 V 1 HETATM 48 C C44 CDL . . . EA 30 190.803 215.803 137.577 1 109.92 ? C44 CDL 202 V 1 HETATM 49 C C45 CDL . . . EA 30 191.574 217.067 137.205 1 109.79 ? C45 CDL 202 V 1 HETATM 50 C C46 CDL . . . EA 30 190.981 217.773 135.969 1 110.24 ? C46 CDL 202 V 1 HETATM 51 C C47 CDL . . . EA 30 192.052 218.465 135.132 1 108.31 ? C47 CDL 202 V 1 HETATM 52 C CB2 CDL . . . EA 30 183.87 206.479 154.056 1 109.28 ? CB2 CDL 202 V 1 HETATM 53 O OB2 CDL . . . EA 30 183.332 205.946 152.852 1 114.57 ? OB2 CDL 202 V 1 HETATM 54 P PB2 CDL . . . EA 30 183.483 204.302 152.552 1 124.02 ? PB2 CDL 202 V 1 HETATM 55 O OB3 CDL . . . EA 30 183.711 203.566 153.86 1 110.48 ? OB3 CDL 202 V 1 HETATM 56 O OB4 CDL . . . EA 30 182.219 203.792 151.9 1 112.85 ? OB4 CDL 202 V 1 HETATM 57 O OB5 CDL . . . EA 30 184.787 204.039 151.53 1 109.3 ? OB5 CDL 202 V 1 HETATM 58 C CB3 CDL . . . EA 30 185.836 204.998 151.513 1 106.02 ? CB3 CDL 202 V 1 HETATM 59 C CB4 CDL . . . EA 30 186.212 205.302 150.056 1 105.91 ? CB4 CDL 202 V 1 HETATM 60 O OB6 CDL . . . EA 30 185.453 206.387 149.576 1 110.65 ? OB6 CDL 202 V 1 HETATM 61 C CB5 CDL . . . EA 30 186.047 207.663 149.79 1 108.7 ? CB5 CDL 202 V 1 HETATM 62 O OB7 CDL . . . EA 30 186.133 208.106 150.887 1 108.42 ? OB7 CDL 202 V 1 HETATM 63 C C51 CDL . . . EA 30 186.588 208.473 148.594 1 105.68 ? C51 CDL 202 V 1 HETATM 64 C C52 CDL . . . EA 30 185.557 208.606 147.461 1 105.94 ? C52 CDL 202 V 1 HETATM 65 C C53 CDL . . . EA 30 185.674 209.95 146.727 1 107.43 ? C53 CDL 202 V 1 HETATM 66 C C54 CDL . . . EA 30 187.097 210.191 146.18 1 107.81 ? C54 CDL 202 V 1 HETATM 67 C C55 CDL . . . EA 30 187.12 210.409 144.659 1 105.43 ? C55 CDL 202 V 1 HETATM 68 C C56 CDL . . . EA 30 188.537 210.191 144.067 1 105.39 ? C56 CDL 202 V 1 HETATM 69 C C57 CDL . . . EA 30 188.5 209.708 142.603 1 108.53 ? C57 CDL 202 V 1 HETATM 70 C C58 CDL . . . EA 30 189.67 210.285 141.768 1 108.58 ? C58 CDL 202 V 1 HETATM 71 C C59 CDL . . . EA 30 189.445 210.114 140.245 1 110.09 ? C59 CDL 202 V 1 HETATM 72 C C60 CDL . . . EA 30 189.061 208.671 139.868 1 108.19 ? C60 CDL 202 V 1 HETATM 73 C C61 CDL . . . EA 30 189.568 208.276 138.455 1 107.74 ? C61 CDL 202 V 1 HETATM 74 C C62 CDL . . . EA 30 190.6 207.129 138.503 1 108.45 ? C62 CDL 202 V 1 HETATM 75 C C63 CDL . . . EA 30 189.945 205.747 138.351 1 109.56 ? C63 CDL 202 V 1 HETATM 76 C C64 CDL . . . EA 30 189.381 205.522 136.939 1 112.45 ? C64 CDL 202 V 1 HETATM 77 C C65 CDL . . . EA 30 187.983 204.913 136.955 1 110.97 ? C65 CDL 202 V 1 HETATM 78 C C66 CDL . . . EA 30 187.015 205.705 137.827 1 109.7 ? C66 CDL 202 V 1 HETATM 79 C C67 CDL . . . EA 30 185.802 206.199 137.041 1 104.51 ? C67 CDL 202 V 1 HETATM 80 C CB6 CDL . . . EA 30 185.93 204.072 149.204 1 105.13 ? CB6 CDL 202 V 1 HETATM 81 O OB8 CDL . . . EA 30 186.039 204.442 147.834 1 108.09 ? OB8 CDL 202 V 1 HETATM 82 C CB7 CDL . . . EA 30 187.374 204.49 147.367 1 107.67 ? CB7 CDL 202 V 1 HETATM 83 O OB9 CDL . . . EA 30 188.134 203.629 147.661 1 112.52 ? OB9 CDL 202 V 1 HETATM 84 C C71 CDL . . . EA 30 187.843 205.66 146.473 1 103.99 ? C71 CDL 202 V 1 HETATM 85 C C72 CDL . . . EA 30 188.632 205.169 145.252 1 102.59 ? C72 CDL 202 V 1 HETATM 86 C C73 CDL . . . EA 30 188.058 205.722 143.938 1 107.86 ? C73 CDL 202 V 1 HETATM 87 C C74 CDL . . . EA 30 189.135 205.917 142.859 1 109.07 ? C74 CDL 202 V 1 HETATM 88 C C75 CDL . . . EA 30 190.48 206.433 143.437 1 105.85 ? C75 CDL 202 V 1 HETATM 89 C C76 CDL . . . EA 30 191.683 205.58 142.958 1 104.4 ? C76 CDL 202 V 1 HETATM 90 C C77 CDL . . . EA 30 192.811 206.454 142.336 1 106.12 ? C77 CDL 202 V 1 HETATM 91 C C78 CDL . . . EA 30 194.195 206.104 142.897 1 106.08 ? C78 CDL 202 V 1 HETATM 92 C C79 CDL . . . EA 30 194.731 204.773 142.329 1 107.02 ? C79 CDL 202 V 1 HETATM 93 C C80 CDL . . . EA 30 195.171 204.9 140.848 1 107.12 ? C80 CDL 202 V 1 HETATM 94 C C81 CDL . . . EA 30 196.322 205.889 140.667 1 106.89 ? C81 CDL 202 V 1 HETATM 95 C C82 CDL . . . EA 30 197.639 205.381 141.322 1 104.71 ? C82 CDL 202 V 1 HETATM 96 C C83 CDL . . . EA 30 198.116 204.049 140.713 1 106.93 ? C83 CDL 202 V 1 HETATM 97 C C84 CDL . . . EA 30 198.418 204.165 139.199 1 104.86 ? C84 CDL 202 V 1 HETATM 98 C C85 CDL . . . EA 30 199.928 204.274 138.913 1 105.21 ? C85 CDL 202 V 1 HETATM 99 C C86 CDL . . . EA 30 200.252 204.189 137.419 1 107.64 ? C86 CDL 202 V 1 HETATM 100 C C87 CDL . . . EA 30 199.38 203.17 136.687 1 108.3 ? C87 CDL 202 V 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 100 #