data_7VXS # _model_server_result.job_id 3St9_NMk2sQmHFGua9GjFQ _model_server_result.datetime_utc '2024-12-30 17:48:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":202}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 33 JA N N ? 33 NA N N ? 33 OA N N ? 33 UA N N ? 33 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . NA 33 120.343 145.714 152.43 1 104.32 ? C23 PLX 202 j 1 HETATM 2 C C22 PLX . . . NA 33 120.776 146.651 151.262 1 107.08 ? C22 PLX 202 j 1 HETATM 3 C C21 PLX . . . NA 33 119.553 147.317 150.55 1 109.2 ? C21 PLX 202 j 1 HETATM 4 C C20 PLX . . . NA 33 118.804 148.336 151.472 1 109.48 ? C20 PLX 202 j 1 HETATM 5 C C19 PLX . . . NA 33 117.842 149.269 150.661 1 107.76 ? C19 PLX 202 j 1 HETATM 6 C C18 PLX . . . NA 33 117.31 150.483 151.512 1 107.69 ? C18 PLX 202 j 1 HETATM 7 C C17 PLX . . . NA 33 118.421 151.575 151.783 1 105.36 ? C17 PLX 202 j 1 HETATM 8 C C16 PLX . . . NA 33 118.068 152.482 153.013 1 108.39 ? C16 PLX 202 j 1 HETATM 9 C C15 PLX . . . NA 33 118.897 153.822 153.041 1 108.64 ? C15 PLX 202 j 1 HETATM 10 C C14 PLX . . . NA 33 119.69 154.006 154.38 1 107.55 ? C14 PLX 202 j 1 HETATM 11 C C13 PLX . . . NA 33 118.95 154.965 155.388 1 106.58 ? C13 PLX 202 j 1 HETATM 12 C C12 PLX . . . NA 33 117.993 154.184 156.35 1 105.72 ? C12 PLX 202 j 1 HETATM 13 C C11 PLX . . . NA 33 118.197 154.574 157.854 1 105.09 ? C11 PLX 202 j 1 HETATM 14 C C10 PLX . . . NA 33 116.857 154.539 158.659 1 106.31 ? C10 PLX 202 j 1 HETATM 15 C C9 PLX . . . NA 33 116.52 155.906 159.362 1 105.46 ? C9 PLX 202 j 1 HETATM 16 C C8 PLX . . . NA 33 116.78 157.157 158.44 1 106.5 ? C8 PLX 202 j 1 HETATM 17 C C7 PLX . . . NA 33 117.967 158.053 158.97 1 107.9 ? C7 PLX 202 j 1 HETATM 18 C C6 PLX . . . NA 33 117.781 159.558 158.63 1 109.33 ? C6 PLX 202 j 1 HETATM 19 O O7 PLX . . . NA 33 117.932 159.742 157.272 1 108.44 ? O7 PLX 202 j 1 HETATM 20 O O6 PLX . . . NA 33 116.485 159.988 159.026 1 111.18 ? O6 PLX 202 j 1 HETATM 21 C C4 PLX . . . NA 33 116.465 161.078 159.92 1 107.64 ? C4 PLX 202 j 1 HETATM 22 C C3 PLX . . . NA 33 117.101 160.665 161.258 1 105.37 ? C3 PLX 202 j 1 HETATM 23 O O4 PLX . . . NA 33 117.748 161.803 161.837 1 105.75 ? O4 PLX 202 j 1 HETATM 24 P P1 PLX . . . NA 33 118.699 161.578 163.199 1 110.5 ? P1 PLX 202 j 1 HETATM 25 O O1 PLX . . . NA 33 119.13 159.97 163.341 1 107.62 ? O1 PLX 202 j 1 HETATM 26 C C2 PLX . . . NA 33 118.484 159.172 164.336 1 106.01 ? C2 PLX 202 j 1 HETATM 27 C C1 PLX . . . NA 33 117.732 157.998 163.621 1 102.32 ? C1 PLX 202 j 1 HETATM 28 N N1 PLX . . . NA 33 116.929 157.206 164.613 1 100.99 ? N1 PLX 202 j 1 HETATM 29 C C1C PLX . . . NA 33 115.966 158.139 165.231 1 105.73 ? C1C PLX 202 j 1 HETATM 30 C C1B PLX . . . NA 33 116.216 156.148 163.838 1 104.98 ? C1B PLX 202 j 1 HETATM 31 C C1A PLX . . . NA 33 117.627 156.522 165.729 1 101.63 ? C1A PLX 202 j 1 HETATM 32 O O2 PLX . . . NA 33 117.945 162.009 164.437 1 104.64 ? O2 PLX 202 j 1 HETATM 33 C C5 PLX . . . NA 33 117.24 162.268 159.322 1 105.52 ? C5 PLX 202 j 1 HETATM 34 O O8 PLX . . . NA 33 116.415 163.432 159.397 1 108.74 ? O8 PLX 202 j 1 HETATM 35 C C24 PLX . . . NA 33 117.092 164.577 159.871 1 110.43 ? C24 PLX 202 j 1 HETATM 36 O O9 PLX . . . NA 33 117.155 164.538 161.258 1 109.68 ? O9 PLX 202 j 1 HETATM 37 C C25 PLX . . . NA 33 116.343 165.852 159.427 1 108.17 ? C25 PLX 202 j 1 HETATM 38 C C26 PLX . . . NA 33 115.802 165.754 157.964 1 104.1 ? C26 PLX 202 j 1 HETATM 39 C C27 PLX . . . NA 33 115.259 167.124 157.447 1 105.01 ? C27 PLX 202 j 1 HETATM 40 C C28 PLX . . . NA 33 115.673 167.411 155.964 1 106.48 ? C28 PLX 202 j 1 HETATM 41 C C29 PLX . . . NA 33 114.643 166.833 154.938 1 108.41 ? C29 PLX 202 j 1 HETATM 42 C C30 PLX . . . NA 33 115.34 166.085 153.739 1 109.41 ? C30 PLX 202 j 1 HETATM 43 C C31 PLX . . . NA 33 115.222 166.888 152.387 1 108.98 ? C31 PLX 202 j 1 HETATM 44 C C32 PLX . . . NA 33 113.82 166.688 151.687 1 108.35 ? C32 PLX 202 j 1 HETATM 45 C C33 PLX . . . NA 33 112.927 167.993 151.744 1 108.07 ? C33 PLX 202 j 1 HETATM 46 C C34 PLX . . . NA 33 111.653 167.809 152.662 1 107.84 ? C34 PLX 202 j 1 HETATM 47 C C35 PLX . . . NA 33 110.33 167.589 151.812 1 107.58 ? C35 PLX 202 j 1 HETATM 48 C C36 PLX . . . NA 33 109.555 166.287 152.226 1 106.93 ? C36 PLX 202 j 1 HETATM 49 C C37 PLX . . . NA 33 110.518 165.069 152.469 1 106.67 ? C37 PLX 202 j 1 HETATM 50 C C38 PLX . . . NA 33 109.861 163.706 152.074 1 106.89 ? C38 PLX 202 j 1 HETATM 51 C C39 PLX . . . NA 33 109.919 163.446 150.547 1 105.58 ? C39 PLX 202 j 1 HETATM 52 O O3 PLX . . . NA 33 119.956 162.414 163.07 1 110.3 ? O3 PLX 202 j 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 397 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 52 #