data_7VXS
#
_model_server_result.job_id            7StwFFiuoc-Oec83pjtTjQ 
_model_server_result.datetime_utc      '2024-12-21 16:38:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":203}' 
#
_entry.id    7VXS 
#
_exptl.entry_id    7VXS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VXS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 JA N N 
? 33 NA N N 
? 33 OA N N 
? 33 UA N N 
? 33 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VXS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 CDL V 1 201 201 CDL CDL . 
EA 30 CDL V 1 202 203 CDL CDL . 
FA 31 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 30 CDL a 1 201 201 CDL CDL . 
IA 31 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 30 CDL i 1 401 401 CDL CDL . 
LA 31 PEE i 1 402 718 PEE PEE . 
MA 31 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 PEE l 1 701 207 PEE PEE . 
QA 30 CDL l 1 702 712 CDL CDL . 
RA 30 CDL l 1 703 713 CDL CDL . 
SA 31 PEE l 1 704 719 PEE PEE . 
TA 30 CDL m 1 201 101 CDL CDL . 
UA 33 PLX n 1 101 101 PLX PLX . 
VA 30 CDL n 1 102 102 CDL CDL . 
WA 31 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 201 PLX PLX . 
YA 30 CDL r 1 503 714 CDL CDL . 
ZA 31 PEE s 1 401 201 PEE PEE . 
AB 30 CDL s 1 402 201 CDL CDL . 
BB 31 PEE s 1 403 401 PEE PEE . 
CB 34 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . OA 33 183.026 135.484 125.979 1 95.38 ? C23 PLX 203 j 1 
HETATM 2 C C22 PLX . . . OA 33 183.675 136.21 127.196 1 100.21 ? C22 PLX 203 j 1 
HETATM 3 C C21 PLX . . . OA 33 183.973 135.233 128.38 1 103.06 ? C21 PLX 203 j 1 
HETATM 4 C C20 PLX . . . OA 33 184.557 135.969 129.632 1 101.03 ? C20 PLX 203 j 1 
HETATM 5 C C19 PLX . . . OA 33 183.579 137.053 130.201 1 102.75 ? C19 PLX 203 j 1 
HETATM 6 C C18 PLX . . . OA 33 182.491 136.438 131.158 1 101.81 ? C18 PLX 203 j 1 
HETATM 7 C C17 PLX . . . OA 33 181.598 137.546 131.846 1 100.12 ? C17 PLX 203 j 1 
HETATM 8 C C16 PLX . . . OA 33 180.131 137.567 131.292 1 100.86 ? C16 PLX 203 j 1 
HETATM 9 C C15 PLX . . . OA 33 179.239 136.423 131.91 1 99.02 ? C15 PLX 203 j 1 
HETATM 10 C C14 PLX . . . OA 33 178.707 135.415 130.833 1 101.46 ? C14 PLX 203 j 1 
HETATM 11 C C13 PLX . . . OA 33 178.665 136.031 129.384 1 97.47 ? C13 PLX 203 j 1 
HETATM 12 C C12 PLX . . . OA 33 177.257 135.868 128.717 1 97.96 ? C12 PLX 203 j 1 
HETATM 13 C C11 PLX . . . OA 33 177.343 135.458 127.208 1 97.53 ? C11 PLX 203 j 1 
HETATM 14 C C10 PLX . . . OA 33 176.011 134.815 126.708 1 97.71 ? C10 PLX 203 j 1 
HETATM 15 C C9 PLX . . . OA 33 175.396 135.587 125.483 1 99.19 ? C9 PLX 203 j 1 
HETATM 16 C C8 PLX . . . OA 33 174.044 134.943 124.991 1 98.61 ? C8 PLX 203 j 1 
HETATM 17 C C7 PLX . . . OA 33 174.126 134.381 123.517 1 99.33 ? C7 PLX 203 j 1 
HETATM 18 C C6 PLX . . . OA 33 174.664 132.925 123.441 1 103.07 ? C6 PLX 203 j 1 
HETATM 19 O O7 PLX . . . OA 33 175.036 132.494 124.696 1 104.7 ? O7 PLX 203 j 1 
HETATM 20 O O6 PLX . . . OA 33 173.661 132.064 122.92 1 104.02 ? O6 PLX 203 j 1 
HETATM 21 C C4 PLX . . . OA 33 172.545 131.888 123.758 1 100.09 ? C4 PLX 203 j 1 
HETATM 22 C C3 PLX . . . OA 33 171.257 132.051 122.936 1 99.9 ? C3 PLX 203 j 1 
HETATM 23 O O4 PLX . . . OA 33 171.435 131.372 121.689 1 105.23 ? O4 PLX 203 j 1 
HETATM 24 P P1 PLX . . . OA 33 170.08 131 120.777 1 119.26 ? P1 PLX 203 j 1 
HETATM 25 O O1 PLX . . . OA 33 169.606 132.338 119.894 1 107.58 ? O1 PLX 203 j 1 
HETATM 26 C C2 PLX . . . OA 33 168.57 133.172 120.42 1 100.35 ? C2 PLX 203 j 1 
HETATM 27 C C1 PLX . . . OA 33 167.933 133.98 119.235 1 98.4 ? C1 PLX 203 j 1 
HETATM 28 N N1 PLX . . . OA 33 166.823 133.204 118.581 1 100.95 ? N1 PLX 203 j 1 
HETATM 29 C C1C PLX . . . OA 33 165.783 132.995 119.609 1 98.37 ? C1C PLX 203 j 1 
HETATM 30 C C1B PLX . . . OA 33 166.305 134.059 117.472 1 100.56 ? C1B PLX 203 j 1 
HETATM 31 C C1A PLX . . . OA 33 167.105 131.873 117.987 1 98.17 ? C1A PLX 203 j 1 
HETATM 32 O O2 PLX . . . OA 33 168.949 130.57 121.686 1 102.14 ? O2 PLX 203 j 1 
HETATM 33 C C5 PLX . . . OA 33 172.579 130.481 124.387 1 97.64 ? C5 PLX 203 j 1 
HETATM 34 O O8 PLX . . . OA 33 172.531 130.625 125.807 1 101.4 ? O8 PLX 203 j 1 
HETATM 35 C C24 PLX . . . OA 33 173.045 129.516 126.513 1 102.47 ? C24 PLX 203 j 1 
HETATM 36 O O9 PLX . . . OA 33 172.102 129.073 127.431 1 100.93 ? O9 PLX 203 j 1 
HETATM 37 C C25 PLX . . . OA 33 174.333 129.929 127.257 1 99.29 ? C25 PLX 203 j 1 
HETATM 38 C C26 PLX . . . OA 33 174.086 131.073 128.293 1 94.67 ? C26 PLX 203 j 1 
HETATM 39 C C27 PLX . . . OA 33 173.961 130.538 129.754 1 94.6 ? C27 PLX 203 j 1 
HETATM 40 C C28 PLX . . . OA 33 174.972 131.235 130.726 1 97.18 ? C28 PLX 203 j 1 
HETATM 41 C C29 PLX . . . OA 33 175.116 130.472 132.084 1 98.94 ? C29 PLX 203 j 1 
HETATM 42 C C30 PLX . . . OA 33 175.109 131.449 133.32 1 98.33 ? C30 PLX 203 j 1 
HETATM 43 C C31 PLX . . . OA 33 176.558 131.705 133.885 1 98.33 ? C31 PLX 203 j 1 
HETATM 44 C C32 PLX . . . OA 33 177.174 133.066 133.371 1 98.16 ? C32 PLX 203 j 1 
HETATM 45 C C33 PLX . . . OA 33 178.217 133.677 134.392 1 101.65 ? C33 PLX 203 j 1 
HETATM 46 C C34 PLX . . . OA 33 177.726 135.038 135.03 1 99.73 ? C34 PLX 203 j 1 
HETATM 47 C C35 PLX . . . OA 33 176.25 134.945 135.604 1 100.12 ? C35 PLX 203 j 1 
HETATM 48 C C36 PLX . . . OA 33 176.169 135.343 137.12 1 99.04 ? C36 PLX 203 j 1 
HETATM 49 C C37 PLX . . . OA 33 177.101 134.454 138.02 1 102.25 ? C37 PLX 203 j 1 
HETATM 50 C C38 PLX . . . OA 33 176.781 132.93 137.884 1 103.58 ? C38 PLX 203 j 1 
HETATM 51 C C39 PLX . . . OA 33 177.642 132.058 138.832 1 99.45 ? C39 PLX 203 j 1 
HETATM 52 O O3 PLX . . . OA 33 170.411 129.868 119.825 1 103.89 ? O3 PLX 203 j 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#