data_7VXS # _model_server_result.job_id PceUmEs3GR8IpJy9R4Ixxg _model_server_result.datetime_utc '2024-12-21 17:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":401}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . KA 30 192.159 147.06 150.968 1 99.94 ? C1 CDL 401 i 1 HETATM 2 O O1 CDL . . . KA 30 191.185 147.473 150.004 1 95.17 ? O1 CDL 401 i 1 HETATM 3 C CA2 CDL . . . KA 30 193.004 148.251 151.402 1 97.54 ? CA2 CDL 401 i 1 HETATM 4 O OA2 CDL . . . KA 30 193.331 148.991 150.23 1 98.94 ? OA2 CDL 401 i 1 HETATM 5 P PA1 CDL . . . KA 30 194.505 150.086 150.199 1 110.22 ? PA1 CDL 401 i 1 HETATM 6 O OA3 CDL . . . KA 30 195.811 149.379 149.932 1 99.51 ? OA3 CDL 401 i 1 HETATM 7 O OA4 CDL . . . KA 30 194.355 150.982 151.403 1 98.46 ? OA4 CDL 401 i 1 HETATM 8 O OA5 CDL . . . KA 30 194.087 150.908 148.882 1 99.34 ? OA5 CDL 401 i 1 HETATM 9 C CA3 CDL . . . KA 30 195.051 151.333 147.924 1 93.63 ? CA3 CDL 401 i 1 HETATM 10 C CA4 CDL . . . KA 30 194.659 150.695 146.598 1 96.14 ? CA4 CDL 401 i 1 HETATM 11 O OA6 CDL . . . KA 30 195.686 150.877 145.625 1 96.81 ? OA6 CDL 401 i 1 HETATM 12 C CA5 CDL . . . KA 30 195.299 150.38 144.312 1 97.89 ? CA5 CDL 401 i 1 HETATM 13 O OA7 CDL . . . KA 30 194.334 149.644 144.201 1 98.98 ? OA7 CDL 401 i 1 HETATM 14 C C11 CDL . . . KA 30 196.081 150.766 143.082 1 94.71 ? C11 CDL 401 i 1 HETATM 15 C C12 CDL . . . KA 30 195.496 152.04 142.493 1 91.4 ? C12 CDL 401 i 1 HETATM 16 C C13 CDL . . . KA 30 195.792 152.112 141.001 1 91.98 ? C13 CDL 401 i 1 HETATM 17 C C14 CDL . . . KA 30 195.271 150.871 140.292 1 89.7 ? C14 CDL 401 i 1 HETATM 18 C C15 CDL . . . KA 30 195.771 150.814 138.856 1 90.29 ? C15 CDL 401 i 1 HETATM 19 C C16 CDL . . . KA 30 195.205 151.964 138.035 1 90.25 ? C16 CDL 401 i 1 HETATM 20 C C17 CDL . . . KA 30 195.612 151.836 136.574 1 93.85 ? C17 CDL 401 i 1 HETATM 21 C C18 CDL . . . KA 30 195.383 150.415 136.074 1 93.28 ? C18 CDL 401 i 1 HETATM 22 C CA6 CDL . . . KA 30 193.373 151.328 146.084 1 95.14 ? CA6 CDL 401 i 1 HETATM 23 O OA8 CDL . . . KA 30 192.226 150.697 146.652 1 97.43 ? OA8 CDL 401 i 1 HETATM 24 C CA7 CDL . . . KA 30 191.31 150.008 145.758 1 96.7 ? CA7 CDL 401 i 1 HETATM 25 O OA9 CDL . . . KA 30 191.449 148.812 145.565 1 94.9 ? OA9 CDL 401 i 1 HETATM 26 C C31 CDL . . . KA 30 190.192 150.764 145.086 1 95.27 ? C31 CDL 401 i 1 HETATM 27 C C32 CDL . . . KA 30 190.173 150.386 143.609 1 93.49 ? C32 CDL 401 i 1 HETATM 28 C C33 CDL . . . KA 30 190.017 151.633 142.746 1 93.86 ? C33 CDL 401 i 1 HETATM 29 C C34 CDL . . . KA 30 190.447 151.384 141.306 1 92.66 ? C34 CDL 401 i 1 HETATM 30 C C35 CDL . . . KA 30 190.871 152.689 140.645 1 89.54 ? C35 CDL 401 i 1 HETATM 31 C C36 CDL . . . KA 30 190.975 152.53 139.135 1 89.37 ? C36 CDL 401 i 1 HETATM 32 C C37 CDL . . . KA 30 191.407 153.832 138.475 1 87.09 ? C37 CDL 401 i 1 HETATM 33 C C38 CDL . . . KA 30 190.807 153.957 137.081 1 86.17 ? C38 CDL 401 i 1 HETATM 34 C C39 CDL . . . KA 30 191.17 152.757 136.22 1 91.3 ? C39 CDL 401 i 1 HETATM 35 C C40 CDL . . . KA 30 192.202 153.126 135.164 1 95.55 ? C40 CDL 401 i 1 HETATM 36 C C41 CDL . . . KA 30 191.526 153.722 133.937 1 92.99 ? C41 CDL 401 i 1 HETATM 37 C C42 CDL . . . KA 30 192.514 153.854 132.787 1 93.93 ? C42 CDL 401 i 1 HETATM 38 C CB2 CDL . . . KA 30 191.479 146.401 152.161 1 95.01 ? CB2 CDL 401 i 1 HETATM 39 O OB2 CDL . . . KA 30 190.45 145.554 151.658 1 100.86 ? OB2 CDL 401 i 1 HETATM 40 P PB2 CDL . . . KA 30 190.262 144.053 152.196 1 116.99 ? PB2 CDL 401 i 1 HETATM 41 O OB3 CDL . . . KA 30 188.881 143.928 152.79 1 97.87 ? OB3 CDL 401 i 1 HETATM 42 O OB4 CDL . . . KA 30 191.481 143.686 153.006 1 99.08 ? OB4 CDL 401 i 1 HETATM 43 O OB5 CDL . . . KA 30 190.291 143.253 150.8 1 102.64 ? OB5 CDL 401 i 1 HETATM 44 C CB3 CDL . . . KA 30 190.975 142.011 150.652 1 98.64 ? CB3 CDL 401 i 1 HETATM 45 C CB4 CDL . . . KA 30 191.798 142.075 149.37 1 98.38 ? CB4 CDL 401 i 1 HETATM 46 O OB6 CDL . . . KA 30 191.004 142.652 148.331 1 101.9 ? OB6 CDL 401 i 1 HETATM 47 C CB5 CDL . . . KA 30 191.409 144.007 147.985 1 97.02 ? CB5 CDL 401 i 1 HETATM 48 O OB7 CDL . . . KA 30 192.283 144.56 148.63 1 91.56 ? OB7 CDL 401 i 1 HETATM 49 C C51 CDL . . . KA 30 190.737 144.722 146.836 1 93.48 ? C51 CDL 401 i 1 HETATM 50 C C52 CDL . . . KA 30 190.516 143.734 145.699 1 88.93 ? C52 CDL 401 i 1 HETATM 51 C C53 CDL . . . KA 30 190.021 144.434 144.441 1 89.23 ? C53 CDL 401 i 1 HETATM 52 C C54 CDL . . . KA 30 189.833 143.429 143.312 1 90.81 ? C54 CDL 401 i 1 HETATM 53 C C55 CDL . . . KA 30 189.466 144.124 142.008 1 90.66 ? C55 CDL 401 i 1 HETATM 54 C C56 CDL . . . KA 30 189.117 143.103 140.931 1 93.45 ? C56 CDL 401 i 1 HETATM 55 C C57 CDL . . . KA 30 188.83 143.787 139.6 1 90.82 ? C57 CDL 401 i 1 HETATM 56 C CB6 CDL . . . KA 30 192.291 140.68 148.988 1 94.99 ? CB6 CDL 401 i 1 HETATM 57 O OB8 CDL . . . KA 30 191.419 140.066 148.04 1 98.66 ? OB8 CDL 401 i 1 HETATM 58 C CB7 CDL . . . KA 30 191.206 138.628 148.041 1 96.3 ? CB7 CDL 401 i 1 HETATM 59 O OB9 CDL . . . KA 30 191.277 138.01 149.088 1 95.11 ? OB9 CDL 401 i 1 HETATM 60 C C71 CDL . . . KA 30 190.885 137.915 146.752 1 95.27 ? C71 CDL 401 i 1 HETATM 61 C C72 CDL . . . KA 30 189.821 136.856 147.01 1 94.7 ? C72 CDL 401 i 1 HETATM 62 C C73 CDL . . . KA 30 189.235 136.368 145.692 1 95.19 ? C73 CDL 401 i 1 HETATM 63 C C74 CDL . . . KA 30 187.74 136.103 145.821 1 94.1 ? C74 CDL 401 i 1 HETATM 64 C C75 CDL . . . KA 30 187.093 136.058 144.444 1 91.9 ? C75 CDL 401 i 1 HETATM 65 C C76 CDL . . . KA 30 185.586 136.266 144.529 1 92.54 ? C76 CDL 401 i 1 HETATM 66 C C77 CDL . . . KA 30 184.983 136.364 143.132 1 92.95 ? C77 CDL 401 i 1 HETATM 67 C C78 CDL . . . KA 30 183.463 136.424 143.194 1 94.71 ? C78 CDL 401 i 1 HETATM 68 C C79 CDL . . . KA 30 182.893 135.172 143.847 1 92.49 ? C79 CDL 401 i 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 68 #