data_7VXS
#
_model_server_result.job_id            QNbp6I5UALARpDN1yZ1rSQ 
_model_server_result.datetime_utc      '2024-12-21 17:16:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AB","auth_seq_id":402}' 
#
_entry.id    7VXS 
#
_exptl.entry_id    7VXS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VXS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 EA N N 
? 30 HA N N 
? 30 KA N N 
? 30 QA N N 
? 30 RA N N 
? 30 TA N N 
? 30 VA N N 
? 30 YA N N 
? 30 AB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VXS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 CDL V 1 201 201 CDL CDL . 
EA 30 CDL V 1 202 203 CDL CDL . 
FA 31 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 30 CDL a 1 201 201 CDL CDL . 
IA 31 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 30 CDL i 1 401 401 CDL CDL . 
LA 31 PEE i 1 402 718 PEE PEE . 
MA 31 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 PEE l 1 701 207 PEE PEE . 
QA 30 CDL l 1 702 712 CDL CDL . 
RA 30 CDL l 1 703 713 CDL CDL . 
SA 31 PEE l 1 704 719 PEE PEE . 
TA 30 CDL m 1 201 101 CDL CDL . 
UA 33 PLX n 1 101 101 PLX PLX . 
VA 30 CDL n 1 102 102 CDL CDL . 
WA 31 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 201 PLX PLX . 
YA 30 CDL r 1 503 714 CDL CDL . 
ZA 31 PEE s 1 401 201 PEE PEE . 
AB 30 CDL s 1 402 201 CDL CDL . 
BB 31 PEE s 1 403 401 PEE PEE . 
CB 34 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . AB 30 139.654 165.298 161.66 1 93.55 ? C1 CDL 402 s 1 
HETATM 2 O O1 CDL . . . AB 30 139.462 166.359 160.772 1 93.13 ? O1 CDL 402 s 1 
HETATM 3 C CA2 CDL . . . AB 30 138.275 164.634 161.91 1 93.13 ? CA2 CDL 402 s 1 
HETATM 4 O OA2 CDL . . . AB 30 137.267 165.483 161.381 1 94.02 ? OA2 CDL 402 s 1 
HETATM 5 P PA1 CDL . . . AB 30 135.71 165.272 161.908 1 101.56 ? PA1 CDL 402 s 1 
HETATM 6 O OA3 CDL . . . AB 30 135.591 163.936 162.597 1 90.26 ? OA3 CDL 402 s 1 
HETATM 7 O OA4 CDL . . . AB 30 135.352 166.366 162.869 1 90.75 ? OA4 CDL 402 s 1 
HETATM 8 O OA5 CDL . . . AB 30 134.684 165.317 160.603 1 90.66 ? OA5 CDL 402 s 1 
HETATM 9 C CA3 CDL . . . AB 30 135.221 165.026 159.323 1 86.6 ? CA3 CDL 402 s 1 
HETATM 10 C CA4 CDL . . . AB 30 134.133 164.395 158.466 1 89.3 ? CA4 CDL 402 s 1 
HETATM 11 O OA6 CDL . . . AB 30 133.987 163.044 158.81 1 93.1 ? OA6 CDL 402 s 1 
HETATM 12 C CA5 CDL . . . AB 30 132.696 162.512 158.535 1 97.33 ? CA5 CDL 402 s 1 
HETATM 13 O OA7 CDL . . . AB 30 131.811 163.234 158.194 1 100.8 ? OA7 CDL 402 s 1 
HETATM 14 C C11 CDL . . . AB 30 132.434 160.981 158.679 1 90.45 ? C11 CDL 402 s 1 
HETATM 15 C C12 CDL . . . AB 30 132.654 160.231 157.361 1 89.83 ? C12 CDL 402 s 1 
HETATM 16 C C13 CDL . . . AB 30 134.076 160.401 156.831 1 87.72 ? C13 CDL 402 s 1 
HETATM 17 C C14 CDL . . . AB 30 134.486 159.269 155.871 1 83.79 ? C14 CDL 402 s 1 
HETATM 18 C C15 CDL . . . AB 30 133.383 158.962 154.818 1 87.68 ? C15 CDL 402 s 1 
HETATM 19 C C16 CDL . . . AB 30 133.924 158.169 153.603 1 90.48 ? C16 CDL 402 s 1 
HETATM 20 C C17 CDL . . . AB 30 135.377 158.583 153.221 1 92.06 ? C17 CDL 402 s 1 
HETATM 21 C C18 CDL . . . AB 30 135.41 159.883 152.379 1 91.73 ? C18 CDL 402 s 1 
HETATM 22 C C19 CDL . . . AB 30 135.095 159.63 150.878 1 91.14 ? C19 CDL 402 s 1 
HETATM 23 C C20 CDL . . . AB 30 136.267 160.051 149.959 1 91.04 ? C20 CDL 402 s 1 
HETATM 24 C C21 CDL . . . AB 30 136.04 159.627 148.484 1 92.29 ? C21 CDL 402 s 1 
HETATM 25 C C22 CDL . . . AB 30 136.395 158.133 148.24 1 91.65 ? C22 CDL 402 s 1 
HETATM 26 C C23 CDL . . . AB 30 136.095 157.693 146.789 1 89.54 ? C23 CDL 402 s 1 
HETATM 27 C CA6 CDL . . . AB 30 134.525 164.503 156.98 1 88.98 ? CA6 CDL 402 s 1 
HETATM 28 O OA8 CDL . . . AB 30 135.928 164.362 156.878 1 92.31 ? OA8 CDL 402 s 1 
HETATM 29 C CA7 CDL . . . AB 30 136.43 164.481 155.544 1 94.24 ? CA7 CDL 402 s 1 
HETATM 30 O OA9 CDL . . . AB 30 137.294 165.251 155.31 1 95.41 ? OA9 CDL 402 s 1 
HETATM 31 C C31 CDL . . . AB 30 135.851 163.605 154.416 1 88.22 ? C31 CDL 402 s 1 
HETATM 32 C C32 CDL . . . AB 30 136.95 162.96 153.574 1 86.18 ? C32 CDL 402 s 1 
HETATM 33 C C33 CDL . . . AB 30 136.938 163.415 152.106 1 88.62 ? C33 CDL 402 s 1 
HETATM 34 C C34 CDL . . . AB 30 136.494 164.888 151.931 1 92.3 ? C34 CDL 402 s 1 
HETATM 35 C C35 CDL . . . AB 30 136.343 165.279 150.436 1 90.04 ? C35 CDL 402 s 1 
HETATM 36 C C36 CDL . . . AB 30 137.496 164.721 149.568 1 92.61 ? C36 CDL 402 s 1 
HETATM 37 C C37 CDL . . . AB 30 137.016 164.234 148.19 1 93.04 ? C37 CDL 402 s 1 
HETATM 38 C C38 CDL . . . AB 30 137.599 162.862 147.821 1 92.07 ? C38 CDL 402 s 1 
HETATM 39 C C39 CDL . . . AB 30 138.882 162.939 146.967 1 93.37 ? C39 CDL 402 s 1 
HETATM 40 C C40 CDL . . . AB 30 139.132 164.337 146.356 1 90.61 ? C40 CDL 402 s 1 
HETATM 41 C C41 CDL . . . AB 30 140.085 164.285 145.112 1 88.34 ? C41 CDL 402 s 1 
HETATM 42 C C42 CDL . . . AB 30 140.722 165.667 144.804 1 88.95 ? C42 CDL 402 s 1 
HETATM 43 C C43 CDL . . . AB 30 139.698 166.831 144.929 1 88.21 ? C43 CDL 402 s 1 
HETATM 44 C CB2 CDL . . . AB 30 140.689 164.314 161.014 1 91.9 ? CB2 CDL 402 s 1 
HETATM 45 O OB2 CDL . . . AB 30 139.969 163.258 160.39 1 91.91 ? OB2 CDL 402 s 1 
HETATM 46 P PB2 CDL . . . AB 30 140.717 162.402 159.155 1 91.55 ? PB2 CDL 402 s 1 
HETATM 47 O OB3 CDL . . . AB 30 142.189 162.228 159.479 1 89.17 ? OB3 CDL 402 s 1 
HETATM 48 O OB4 CDL . . . AB 30 140.07 161.046 159.014 1 94.85 ? OB4 CDL 402 s 1 
HETATM 49 O OB5 CDL . . . AB 30 140.557 163.245 157.716 1 83.48 ? OB5 CDL 402 s 1 
HETATM 50 C CB3 CDL . . . AB 30 141.575 163.1 156.736 1 85.71 ? CB3 CDL 402 s 1 
HETATM 51 C CB4 CDL . . . AB 30 140.915 162.76 155.393 1 85.74 ? CB4 CDL 402 s 1 
HETATM 52 O OB6 CDL . . . AB 30 141.892 162.316 154.482 1 90.52 ? OB6 CDL 402 s 1 
HETATM 53 C CB5 CDL . . . AB 30 141.623 161.041 153.908 1 88.71 ? CB5 CDL 402 s 1 
HETATM 54 O OB7 CDL . . . AB 30 141.59 160.077 154.596 1 89.1 ? OB7 CDL 402 s 1 
HETATM 55 C C51 CDL . . . AB 30 141.371 160.91 152.392 1 89.12 ? C51 CDL 402 s 1 
HETATM 56 C C52 CDL . . . AB 30 141.263 159.444 151.939 1 86.53 ? C52 CDL 402 s 1 
HETATM 57 C C53 CDL . . . AB 30 140.279 159.266 150.772 1 90.93 ? C53 CDL 402 s 1 
HETATM 58 C C54 CDL . . . AB 30 140.826 158.327 149.674 1 91.78 ? C54 CDL 402 s 1 
HETATM 59 C C55 CDL . . . AB 30 139.845 157.197 149.327 1 89.7 ? C55 CDL 402 s 1 
HETATM 60 C C56 CDL . . . AB 30 140.402 156.243 148.236 1 89.51 ? C56 CDL 402 s 1 
HETATM 61 C C57 CDL . . . AB 30 140.039 154.769 148.512 1 93.09 ? C57 CDL 402 s 1 
HETATM 62 C C58 CDL . . . AB 30 141.27 153.833 148.43 1 89.35 ? C58 CDL 402 s 1 
HETATM 63 C C59 CDL . . . AB 30 140.865 152.34 148.365 1 86.56 ? C59 CDL 402 s 1 
HETATM 64 C C60 CDL . . . AB 30 141.954 151.464 147.718 1 86.27 ? C60 CDL 402 s 1 
HETATM 65 C C61 CDL . . . AB 30 142.185 151.821 146.225 1 85.11 ? C61 CDL 402 s 1 
HETATM 66 C C62 CDL . . . AB 30 142.135 150.577 145.311 1 87.12 ? C62 CDL 402 s 1 
HETATM 67 C C63 CDL . . . AB 30 142.818 150.818 143.958 1 90.07 ? C63 CDL 402 s 1 
HETATM 68 C C64 CDL . . . AB 30 142.017 151.775 143.062 1 86.35 ? C64 CDL 402 s 1 
HETATM 69 C CB6 CDL . . . AB 30 140.255 164.012 154.833 1 87.78 ? CB6 CDL 402 s 1 
HETATM 70 O OB8 CDL . . . AB 30 140.749 164.208 153.512 1 90.98 ? OB8 CDL 402 s 1 
HETATM 71 C CB7 CDL . . . AB 30 141.662 165.282 153.392 1 87.79 ? CB7 CDL 402 s 1 
HETATM 72 O OB9 CDL . . . AB 30 142.49 165.454 154.222 1 89.72 ? OB9 CDL 402 s 1 
HETATM 73 C C71 CDL . . . AB 30 141.581 166.224 152.17 1 87.37 ? C71 CDL 402 s 1 
HETATM 74 C C72 CDL . . . AB 30 140.726 165.623 151.048 1 87.12 ? C72 CDL 402 s 1 
HETATM 75 C C73 CDL . . . AB 30 141.546 165.355 149.776 1 88.76 ? C73 CDL 402 s 1 
HETATM 76 C C74 CDL . . . AB 30 141.697 163.854 149.487 1 86.76 ? C74 CDL 402 s 1 
HETATM 77 C C75 CDL . . . AB 30 142.365 163.595 148.11 1 89.99 ? C75 CDL 402 s 1 
HETATM 78 C C76 CDL . . . AB 30 143.828 163.105 148.245 1 88.11 ? C76 CDL 402 s 1 
HETATM 79 C C77 CDL . . . AB 30 144.267 162.249 147.021 1 87.19 ? C77 CDL 402 s 1 
HETATM 80 C C78 CDL . . . AB 30 144.409 160.763 147.374 1 85.91 ? C78 CDL 402 s 1 
HETATM 81 C C79 CDL . . . AB 30 144.589 159.883 146.119 1 89.12 ? C79 CDL 402 s 1 
HETATM 82 C C80 CDL . . . AB 30 143.428 160.065 145.107 1 90.56 ? C80 CDL 402 s 1 
HETATM 83 C C81 CDL . . . AB 30 142.086 159.599 145.672 1 92.62 ? C81 CDL 402 s 1 
HETATM 84 C C82 CDL . . . AB 30 140.983 159.5 144.577 1 89.91 ? C82 CDL 402 s 1 
HETATM 85 C C83 CDL . . . AB 30 140.788 160.827 143.82 1 85.7 ? C83 CDL 402 s 1 
HETATM 86 C C84 CDL . . . AB 30 139.767 160.699 142.665 1 90.78 ? C84 CDL 402 s 1 
HETATM 87 C C85 CDL . . . AB 30 138.377 161.238 143.053 1 94.42 ? C85 CDL 402 s 1 
HETATM 88 C C86 CDL . . . AB 30 137.381 161.177 141.892 1 94.36 ? C86 CDL 402 s 1 
HETATM 89 C C87 CDL . . . AB 30 136.587 159.871 141.874 1 88.55 ? C87 CDL 402 s 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    403 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           89 
#