data_7VXS # _model_server_result.job_id '_Auu0ENTI3bfYWN94PBerQ' _model_server_result.datetime_utc '2024-12-21 17:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":402}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 IA N N ? 31 LA N N ? 31 MA N N ? 31 PA N N ? 31 SA N N ? 31 WA N N ? 31 ZA N N ? 31 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . LA 31 193.88 190.303 134.348 1 78.52 ? C27 PEE 402 i 1 HETATM 2 C C26 PEE . . . LA 31 193.951 190.651 135.835 1 80.68 ? C26 PEE 402 i 1 HETATM 3 C C25 PEE . . . LA 31 194.808 189.662 136.615 1 78.56 ? C25 PEE 402 i 1 HETATM 4 C C24 PEE . . . LA 31 193.987 188.512 137.194 1 76.41 ? C24 PEE 402 i 1 HETATM 5 C C23 PEE . . . LA 31 194.816 187.618 138.113 1 78.17 ? C23 PEE 402 i 1 HETATM 6 C C22 PEE . . . LA 31 195.392 188.388 139.301 1 83.97 ? C22 PEE 402 i 1 HETATM 7 C C21 PEE . . . LA 31 196.924 188.386 139.307 1 80.64 ? C21 PEE 402 i 1 HETATM 8 C C20 PEE . . . LA 31 197.508 189.761 139.627 1 74.82 ? C20 PEE 402 i 1 HETATM 9 C C19 PEE . . . LA 31 198.445 189.709 140.832 1 72.09 ? C19 PEE 402 i 1 HETATM 10 C C18 PEE . . . LA 31 197.789 189.029 142.033 1 70.97 ? C18 PEE 402 i 1 HETATM 11 C C17 PEE . . . LA 31 198.765 188.123 142.784 1 74.76 ? C17 PEE 402 i 1 HETATM 12 C C16 PEE . . . LA 31 198.685 188.329 144.294 1 75.91 ? C16 PEE 402 i 1 HETATM 13 C C15 PEE . . . LA 31 199.021 187.057 145.071 1 73.72 ? C15 PEE 402 i 1 HETATM 14 C C14 PEE . . . LA 31 199 187.293 146.583 1 72.56 ? C14 PEE 402 i 1 HETATM 15 C C13 PEE . . . LA 31 198.984 185.981 147.373 1 77 ? C13 PEE 402 i 1 HETATM 16 C C12 PEE . . . LA 31 198.793 186.213 148.877 1 75.35 ? C12 PEE 402 i 1 HETATM 17 C C11 PEE . . . LA 31 197.628 187.163 149.175 1 79.34 ? C11 PEE 402 i 1 HETATM 18 C C10 PEE . . . LA 31 197.091 186.982 150.6 1 85.01 ? C10 PEE 402 i 1 HETATM 19 O O4 PEE . . . LA 31 197.843 186.88 151.508 1 77.5 ? O4 PEE 402 i 1 HETATM 20 O O2 PEE . . . LA 31 195.709 186.934 150.826 1 87.89 ? O2 PEE 402 i 1 HETATM 21 C C2 PEE . . . LA 31 195.204 185.632 150.941 1 77.68 ? C2 PEE 402 i 1 HETATM 22 C C1 PEE . . . LA 31 195.148 185.232 152.415 1 78.28 ? C1 PEE 402 i 1 HETATM 23 O O3P PEE . . . LA 31 196.226 184.374 152.685 1 85.99 ? O3P PEE 402 i 1 HETATM 24 P P PEE . . . LA 31 195.906 182.862 153.276 1 108 ? P PEE 402 i 1 HETATM 25 O O2P PEE . . . LA 31 195.247 182.029 152.202 1 84.5 ? O2P PEE 402 i 1 HETATM 26 O O1P PEE . . . LA 31 197.195 182.201 153.702 1 83.95 ? O1P PEE 402 i 1 HETATM 27 O O4P PEE . . . LA 31 194.895 182.985 154.578 1 89.04 ? O4P PEE 402 i 1 HETATM 28 C C4 PEE . . . LA 31 195.433 182.816 155.865 1 81.31 ? C4 PEE 402 i 1 HETATM 29 C C5 PEE . . . LA 31 194.57 183.601 156.856 1 79.32 ? C5 PEE 402 i 1 HETATM 30 N N PEE . . . LA 31 193.433 182.806 157.283 1 80.11 ? N PEE 402 i 1 HETATM 31 C C3 PEE . . . LA 31 193.803 185.577 150.339 1 71.39 ? C3 PEE 402 i 1 HETATM 32 O O3 PEE . . . LA 31 193.713 184.417 149.562 1 78.57 ? O3 PEE 402 i 1 HETATM 33 C C30 PEE . . . LA 31 193.356 184.651 148.229 1 76.69 ? C30 PEE 402 i 1 HETATM 34 O O5 PEE . . . LA 31 192.216 184.762 147.931 1 81.37 ? O5 PEE 402 i 1 HETATM 35 C C31 PEE . . . LA 31 194.44 184.766 147.156 1 72.83 ? C31 PEE 402 i 1 HETATM 36 C C32 PEE . . . LA 31 194.017 184.121 145.836 1 72.49 ? C32 PEE 402 i 1 HETATM 37 C C33 PEE . . . LA 31 194.52 184.914 144.628 1 74.35 ? C33 PEE 402 i 1 HETATM 38 C C34 PEE . . . LA 31 194.875 184.006 143.45 1 71.35 ? C34 PEE 402 i 1 HETATM 39 C C35 PEE . . . LA 31 194.845 184.759 142.117 1 74.47 ? C35 PEE 402 i 1 HETATM 40 C C36 PEE . . . LA 31 194.523 183.826 140.949 1 77.49 ? C36 PEE 402 i 1 HETATM 41 C C37 PEE . . . LA 31 193.863 184.56 139.781 1 77.63 ? C37 PEE 402 i 1 HETATM 42 C C38 PEE . . . LA 31 192.397 184.887 140.06 1 76.09 ? C38 PEE 402 i 1 HETATM 43 C C39 PEE . . . LA 31 191.62 185.208 138.788 1 71.87 ? C39 PEE 402 i 1 HETATM 44 C C40 PEE . . . LA 31 190.318 184.421 138.699 1 73.61 ? C40 PEE 402 i 1 HETATM 45 C C41 PEE . . . LA 31 189.206 185.219 138.032 1 77.81 ? C41 PEE 402 i 1 HETATM 46 C C42 PEE . . . LA 31 187.831 184.847 138.572 1 78.58 ? C42 PEE 402 i 1 HETATM 47 C C43 PEE . . . LA 31 186.789 185.927 138.294 1 77.46 ? C43 PEE 402 i 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 47 #