data_7VXS
#
_model_server_result.job_id            3KjFnfupAajn0x_QbyGEQQ 
_model_server_result.datetime_utc      '2024-11-14 22:50:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":502}' 
#
_entry.id    7VXS 
#
_exptl.entry_id    7VXS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VXS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 JA N N 
? 33 NA N N 
? 33 OA N N 
? 33 UA N N 
? 33 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VXS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 CDL V 1 201 201 CDL CDL . 
EA 30 CDL V 1 202 203 CDL CDL . 
FA 31 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 30 CDL a 1 201 201 CDL CDL . 
IA 31 PEE b 1 201 720 PEE PEE . 
JA 33 PLX g 1 201 705 PLX PLX . 
KA 30 CDL i 1 401 401 CDL CDL . 
LA 31 PEE i 1 402 718 PEE PEE . 
MA 31 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 PEE l 1 701 207 PEE PEE . 
QA 30 CDL l 1 702 712 CDL CDL . 
RA 30 CDL l 1 703 713 CDL CDL . 
SA 31 PEE l 1 704 719 PEE PEE . 
TA 30 CDL m 1 201 101 CDL CDL . 
UA 33 PLX n 1 101 101 PLX PLX . 
VA 30 CDL n 1 102 102 CDL CDL . 
WA 31 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 201 PLX PLX . 
YA 30 CDL r 1 503 714 CDL CDL . 
ZA 31 PEE s 1 401 201 PEE PEE . 
AB 30 CDL s 1 402 201 CDL CDL . 
BB 31 PEE s 1 403 401 PEE PEE . 
CB 34 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . XA 33 246.402 195.282 140.063 1 83.18 ? C23 PLX 502 r 1 
HETATM 2 C C22 PLX . . . XA 33 247.403 196.1 139.19 1 86.36 ? C22 PLX 502 r 1 
HETATM 3 C C21 PLX . . . XA 33 246.676 197.015 138.151 1 86.16 ? C21 PLX 502 r 1 
HETATM 4 C C20 PLX . . . XA 33 247.675 197.905 137.339 1 82.27 ? C20 PLX 502 r 1 
HETATM 5 C C19 PLX . . . XA 33 248.746 197.059 136.571 1 88.07 ? C19 PLX 502 r 1 
HETATM 6 C C18 PLX . . . XA 33 248.283 196.684 135.114 1 88.3 ? C18 PLX 502 r 1 
HETATM 7 C C17 PLX . . . XA 33 249.472 196.152 134.219 1 86.88 ? C17 PLX 502 r 1 
HETATM 8 C C16 PLX . . . XA 33 249.281 196.505 132.702 1 86.78 ? C16 PLX 502 r 1 
HETATM 9 C C15 PLX . . . XA 33 247.917 195.961 132.13 1 89.33 ? C15 PLX 502 r 1 
HETATM 10 C C14 PLX . . . XA 33 247.098 197.06 131.37 1 85.04 ? C14 PLX 502 r 1 
HETATM 11 C C13 PLX . . . XA 33 247.046 196.805 129.817 1 86.91 ? C13 PLX 502 r 1 
HETATM 12 C C12 PLX . . . XA 33 246.603 198.079 129.02 1 85.6 ? C12 PLX 502 r 1 
HETATM 13 C C11 PLX . . . XA 33 245.437 197.785 128.013 1 85.81 ? C11 PLX 502 r 1 
HETATM 14 C C10 PLX . . . XA 33 245.829 198.111 126.536 1 87.24 ? C10 PLX 502 r 1 
HETATM 15 C C9 PLX . . . XA 33 244.992 197.285 125.49 1 84.92 ? C9 PLX 502 r 1 
HETATM 16 C C8 PLX . . . XA 33 245.764 196.018 124.956 1 85.09 ? C8 PLX 502 r 1 
HETATM 17 C C7 PLX . . . XA 33 244.791 194.819 124.627 1 85.36 ? C7 PLX 502 r 1 
HETATM 18 C C6 PLX . . . XA 33 243.745 195.191 123.54 1 87.18 ? C6 PLX 502 r 1 
HETATM 19 O O7 PLX . . . XA 33 244.357 195.931 122.552 1 84.46 ? O7 PLX 502 r 1 
HETATM 20 O O6 PLX . . . XA 33 243.192 194.008 122.982 1 89.91 ? O6 PLX 502 r 1 
HETATM 21 C C4 PLX . . . XA 33 241.827 194.109 122.662 1 87.6 ? C4 PLX 502 r 1 
HETATM 22 C C3 PLX . . . XA 33 241.679 194.746 121.272 1 82.54 ? C3 PLX 502 r 1 
HETATM 23 O O4 PLX . . . XA 33 240.822 193.919 120.482 1 77.16 ? O4 PLX 502 r 1 
HETATM 24 P P1 PLX . . . XA 33 240.832 194.143 118.824 1 107.02 ? P1 PLX 502 r 1 
HETATM 25 O O1 PLX . . . XA 33 241.47 192.785 118.09 1 90.54 ? O1 PLX 502 r 1 
HETATM 26 C C2 PLX . . . XA 33 242.891 192.638 118.039 1 77.68 ? C2 PLX 502 r 1 
HETATM 27 C C1 PLX . . . XA 33 243.234 191.29 117.311 1 74.44 ? C1 PLX 502 r 1 
HETATM 28 N N1 PLX . . . XA 33 242.864 191.313 115.852 1 85.98 ? N1 PLX 502 r 1 
HETATM 29 C C1C PLX . . . XA 33 243.223 192.639 115.309 1 84.06 ? C1C PLX 502 r 1 
HETATM 30 C C1B PLX . . . XA 33 243.682 190.25 115.196 1 85.75 ? C1B PLX 502 r 1 
HETATM 31 C C1A PLX . . . XA 33 241.458 191.056 115.45 1 86.36 ? C1A PLX 502 r 1 
HETATM 32 O O2 PLX . . . XA 33 241.682 195.347 118.483 1 86.06 ? O2 PLX 502 r 1 
HETATM 33 C C5 PLX . . . XA 33 241.19 192.705 122.653 1 81.68 ? C5 PLX 502 r 1 
HETATM 34 O O8 PLX . . . XA 33 240.106 192.684 123.584 1 85.16 ? O8 PLX 502 r 1 
HETATM 35 C C24 PLX . . . XA 33 239.407 191.459 123.605 1 83.18 ? C24 PLX 502 r 1 
HETATM 36 O O9 PLX . . . XA 33 238.674 191.333 122.433 1 87.36 ? O9 PLX 502 r 1 
HETATM 37 C C25 PLX . . . XA 33 238.448 191.411 124.813 1 74.1 ? C25 PLX 502 r 1 
HETATM 38 C C26 PLX . . . XA 33 237.305 190.366 124.603 1 75.59 ? C26 PLX 502 r 1 
HETATM 39 C C27 PLX . . . XA 33 236.337 190.274 125.824 1 79.65 ? C27 PLX 502 r 1 
HETATM 40 C C28 PLX . . . XA 33 236.5 188.928 126.608 1 82.68 ? C28 PLX 502 r 1 
HETATM 41 C C29 PLX . . . XA 33 235.151 188.418 127.211 1 78.69 ? C29 PLX 502 r 1 
HETATM 42 C C30 PLX . . . XA 33 235.287 188.064 128.74 1 83.26 ? C30 PLX 502 r 1 
HETATM 43 C C31 PLX . . . XA 33 235.676 186.555 128.971 1 82.18 ? C31 PLX 502 r 1 
HETATM 44 C C32 PLX . . . XA 33 234.411 185.636 129.185 1 82.01 ? C32 PLX 502 r 1 
HETATM 45 C C33 PLX . . . XA 33 234.118 185.369 130.716 1 79.78 ? C33 PLX 502 r 1 
HETATM 46 C C34 PLX . . . XA 33 232.575 185.435 131.052 1 78.78 ? C34 PLX 502 r 1 
HETATM 47 C C35 PLX . . . XA 33 231.985 186.899 130.892 1 76.23 ? C35 PLX 502 r 1 
HETATM 48 C C36 PLX . . . XA 33 230.469 186.89 130.489 1 77.12 ? C36 PLX 502 r 1 
HETATM 49 C C37 PLX . . . XA 33 230.066 188.169 129.671 1 80.09 ? C37 PLX 502 r 1 
HETATM 50 C C38 PLX . . . XA 33 228.799 187.932 128.788 1 78.29 ? C38 PLX 502 r 1 
HETATM 51 C C39 PLX . . . XA 33 228.995 188.434 127.334 1 71.45 ? C39 PLX 502 r 1 
HETATM 52 O O3 PLX . . . XA 33 239.417 194.366 118.329 1 91.87 ? O3 PLX 502 r 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    170 
_model_server_stats.query_time_ms           415 
_model_server_stats.encode_time_ms          61 
_model_server_stats.element_count           52 
#