data_7VXS # _model_server_result.job_id x4SDmMbHolCsi0vSkK6I9Q _model_server_result.datetime_utc '2024-11-14 23:11:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":503}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . YA 30 219.381 159.286 152.15 1 91.96 ? C1 CDL 503 r 1 HETATM 2 O O1 CDL . . . YA 30 218.481 159.052 151.108 1 90 ? O1 CDL 503 r 1 HETATM 3 C CA2 CDL . . . YA 30 218.825 160.468 152.986 1 87.62 ? CA2 CDL 503 r 1 HETATM 4 O OA2 CDL . . . YA 30 217.688 160.983 152.307 1 91.29 ? OA2 CDL 503 r 1 HETATM 5 P PA1 CDL . . . YA 30 216.679 162.011 153.127 1 108.65 ? PA1 CDL 503 r 1 HETATM 6 O OA3 CDL . . . YA 30 217.018 161.984 154.597 1 93.09 ? OA3 CDL 503 r 1 HETATM 7 O OA4 CDL . . . YA 30 215.263 161.56 152.934 1 93.92 ? OA4 CDL 503 r 1 HETATM 8 O OA5 CDL . . . YA 30 216.845 163.559 152.547 1 89.7 ? OA5 CDL 503 r 1 HETATM 9 C CA3 CDL . . . YA 30 215.807 164.488 152.814 1 85.65 ? CA3 CDL 503 r 1 HETATM 10 C CA4 CDL . . . YA 30 215.282 165.018 151.488 1 85.18 ? CA4 CDL 503 r 1 HETATM 11 O OA6 CDL . . . YA 30 214.181 165.854 151.718 1 89.13 ? OA6 CDL 503 r 1 HETATM 12 C CA5 CDL . . . YA 30 214.503 167.237 151.777 1 84.91 ? CA5 CDL 503 r 1 HETATM 13 O OA7 CDL . . . YA 30 215.64 167.582 151.853 1 88.91 ? OA7 CDL 503 r 1 HETATM 14 C C11 CDL . . . YA 30 213.367 168.305 151.734 1 82.61 ? C11 CDL 503 r 1 HETATM 15 C C12 CDL . . . YA 30 213.841 169.616 151.099 1 85.45 ? C12 CDL 503 r 1 HETATM 16 C C13 CDL . . . YA 30 212.761 170.281 150.25 1 85.05 ? C13 CDL 503 r 1 HETATM 17 C C14 CDL . . . YA 30 213.24 170.524 148.807 1 82.36 ? C14 CDL 503 r 1 HETATM 18 C C15 CDL . . . YA 30 212.059 170.615 147.8 1 83.87 ? C15 CDL 503 r 1 HETATM 19 C C16 CDL . . . YA 30 212.45 170.107 146.391 1 82.91 ? C16 CDL 503 r 1 HETATM 20 C C17 CDL . . . YA 30 211.861 168.694 146.099 1 88.38 ? C17 CDL 503 r 1 HETATM 21 C C18 CDL . . . YA 30 211.632 168.453 144.586 1 87.43 ? C18 CDL 503 r 1 HETATM 22 C C19 CDL . . . YA 30 212.967 168.429 143.793 1 85.63 ? C19 CDL 503 r 1 HETATM 23 C C20 CDL . . . YA 30 212.849 167.691 142.438 1 85.72 ? C20 CDL 503 r 1 HETATM 24 C C21 CDL . . . YA 30 214.048 167.994 141.501 1 86.2 ? C21 CDL 503 r 1 HETATM 25 C C22 CDL . . . YA 30 214.151 166.989 140.32 1 86.89 ? C22 CDL 503 r 1 HETATM 26 C C23 CDL . . . YA 30 214.849 165.675 140.734 1 88.51 ? C23 CDL 503 r 1 HETATM 27 C C24 CDL . . . YA 30 216.392 165.819 140.762 1 88.17 ? C24 CDL 503 r 1 HETATM 28 C C25 CDL . . . YA 30 217.077 164.58 141.361 1 84.21 ? C25 CDL 503 r 1 HETATM 29 C C26 CDL . . . YA 30 216.752 164.408 142.861 1 80.23 ? C26 CDL 503 r 1 HETATM 30 C C27 CDL . . . YA 30 217.323 163.105 143.426 1 82.41 ? C27 CDL 503 r 1 HETATM 31 C CA6 CDL . . . YA 30 214.841 163.843 150.596 1 82.28 ? CA6 CDL 503 r 1 HETATM 32 O OA8 CDL . . . YA 30 213.972 164.353 149.605 1 82.14 ? OA8 CDL 503 r 1 HETATM 33 C CA7 CDL . . . YA 30 214.55 164.404 148.3 1 86.61 ? CA7 CDL 503 r 1 HETATM 34 O OA9 CDL . . . YA 30 215.664 164.048 148.131 1 90.62 ? OA9 CDL 503 r 1 HETATM 35 C C31 CDL . . . YA 30 213.725 164.939 147.116 1 83.95 ? C31 CDL 503 r 1 HETATM 36 C C32 CDL . . . YA 30 213.525 163.892 146.025 1 82.1 ? C32 CDL 503 r 1 HETATM 37 C C33 CDL . . . YA 30 213.359 164.524 144.636 1 87.11 ? C33 CDL 503 r 1 HETATM 38 C C34 CDL . . . YA 30 211.875 164.679 144.233 1 85.05 ? C34 CDL 503 r 1 HETATM 39 C C35 CDL . . . YA 30 211.469 163.658 143.139 1 83.68 ? C35 CDL 503 r 1 HETATM 40 C C36 CDL . . . YA 30 210.539 164.274 142.068 1 87.65 ? C36 CDL 503 r 1 HETATM 41 C C37 CDL . . . YA 30 210.091 163.237 141.026 1 86.48 ? C37 CDL 503 r 1 HETATM 42 C C38 CDL . . . YA 30 210.586 163.581 139.617 1 84.33 ? C38 CDL 503 r 1 HETATM 43 C C39 CDL . . . YA 30 210.006 164.911 139.103 1 88.37 ? C39 CDL 503 r 1 HETATM 44 C C40 CDL . . . YA 30 211.109 165.889 138.641 1 88.06 ? C40 CDL 503 r 1 HETATM 45 C C41 CDL . . . YA 30 210.521 167.211 138.037 1 91.02 ? C41 CDL 503 r 1 HETATM 46 C C42 CDL . . . YA 30 211.4 167.769 136.885 1 90.56 ? C42 CDL 503 r 1 HETATM 47 C C43 CDL . . . YA 30 210.898 169.143 136.356 1 87.49 ? C43 CDL 503 r 1 HETATM 48 C C44 CDL . . . YA 30 211.681 170.34 136.959 1 87.33 ? C44 CDL 503 r 1 HETATM 49 C C45 CDL . . . YA 30 211.059 170.858 138.254 1 86.56 ? C45 CDL 503 r 1 HETATM 50 C C46 CDL . . . YA 30 211.787 170.342 139.51 1 84.56 ? C46 CDL 503 r 1 HETATM 51 C C47 CDL . . . YA 30 210.872 170.307 140.731 1 84.85 ? C47 CDL 503 r 1 HETATM 52 C CB2 CDL . . . YA 30 220.788 159.586 151.524 1 89.96 ? CB2 CDL 503 r 1 HETATM 53 O OB2 CDL . . . YA 30 221.284 158.392 150.932 1 91.92 ? OB2 CDL 503 r 1 HETATM 54 P PB2 CDL . . . YA 30 220.857 158.074 149.341 1 110.52 ? PB2 CDL 503 r 1 HETATM 55 O OB3 CDL . . . YA 30 222.095 158.087 148.463 1 93.07 ? OB3 CDL 503 r 1 HETATM 56 O OB4 CDL . . . YA 30 220.192 156.72 149.258 1 88.03 ? OB4 CDL 503 r 1 HETATM 57 O OB5 CDL . . . YA 30 219.783 159.254 148.83 1 90.39 ? OB5 CDL 503 r 1 HETATM 58 C CB3 CDL . . . YA 30 220.222 160.19 147.857 1 86.12 ? CB3 CDL 503 r 1 HETATM 59 C CB4 CDL . . . YA 30 219.254 160.125 146.668 1 90.27 ? CB4 CDL 503 r 1 HETATM 60 O OB6 CDL . . . YA 30 219.855 160.699 145.53 1 92.31 ? OB6 CDL 503 r 1 HETATM 61 C CB5 CDL . . . YA 30 220.629 159.791 144.751 1 87.05 ? CB5 CDL 503 r 1 HETATM 62 O OB7 CDL . . . YA 30 221.65 159.358 145.171 1 86.48 ? OB7 CDL 503 r 1 HETATM 63 C C51 CDL . . . YA 30 220.133 159.361 143.356 1 81.79 ? C51 CDL 503 r 1 HETATM 64 C C52 CDL . . . YA 30 219.858 160.56 142.433 1 80.85 ? C52 CDL 503 r 1 HETATM 65 C C53 CDL . . . YA 30 219.879 160.155 140.952 1 87.58 ? C53 CDL 503 r 1 HETATM 66 C C54 CDL . . . YA 30 221.107 159.285 140.607 1 89.55 ? C54 CDL 503 r 1 HETATM 67 C C55 CDL . . . YA 30 221.588 159.503 139.165 1 89.03 ? C55 CDL 503 r 1 HETATM 68 C C56 CDL . . . YA 30 222.766 158.564 138.797 1 86.18 ? C56 CDL 503 r 1 HETATM 69 C C57 CDL . . . YA 30 222.662 158.035 137.352 1 84.16 ? C57 CDL 503 r 1 HETATM 70 C C58 CDL . . . YA 30 223.7 156.923 137.064 1 87.01 ? C58 CDL 503 r 1 HETATM 71 C C59 CDL . . . YA 30 225.107 157.287 137.6 1 86.74 ? C59 CDL 503 r 1 HETATM 72 C C60 CDL . . . YA 30 226.152 157.392 136.475 1 88.02 ? C60 CDL 503 r 1 HETATM 73 C C61 CDL . . . YA 30 225.746 158.413 135.376 1 86.82 ? C61 CDL 503 r 1 HETATM 74 C C62 CDL . . . YA 30 226.036 157.896 133.95 1 85.52 ? C62 CDL 503 r 1 HETATM 75 C C63 CDL . . . YA 30 227.304 157.031 133.887 1 89.68 ? C63 CDL 503 r 1 HETATM 76 C C64 CDL . . . YA 30 227.669 156.618 132.452 1 90.69 ? C64 CDL 503 r 1 HETATM 77 C C65 CDL . . . YA 30 228.814 157.452 131.889 1 89.08 ? C65 CDL 503 r 1 HETATM 78 C C66 CDL . . . YA 30 229.425 156.833 130.637 1 85.57 ? C66 CDL 503 r 1 HETATM 79 C C67 CDL . . . YA 30 230.739 156.113 130.935 1 84.99 ? C67 CDL 503 r 1 HETATM 80 C CB6 CDL . . . YA 30 217.986 160.894 147.021 1 85.97 ? CB6 CDL 503 r 1 HETATM 81 O OB8 CDL . . . YA 30 217.156 160.959 145.865 1 94.23 ? OB8 CDL 503 r 1 HETATM 82 C CB7 CDL . . . YA 30 215.772 160.858 146.149 1 88.82 ? CB7 CDL 503 r 1 HETATM 83 O OB9 CDL . . . YA 30 215.325 161.402 147.103 1 90.48 ? OB9 CDL 503 r 1 HETATM 84 C C71 CDL . . . YA 30 214.841 160.045 145.221 1 82.01 ? C71 CDL 503 r 1 HETATM 85 C C72 CDL . . . YA 30 215.332 160 143.769 1 83.45 ? C72 CDL 503 r 1 HETATM 86 C C73 CDL . . . YA 30 214.166 160.007 142.768 1 84.24 ? C73 CDL 503 r 1 HETATM 87 C C74 CDL . . . YA 30 214.329 161.086 141.687 1 85.95 ? C74 CDL 503 r 1 HETATM 88 C C75 CDL . . . YA 30 215.488 160.764 140.707 1 84.42 ? C75 CDL 503 r 1 HETATM 89 C C76 CDL . . . YA 30 215.028 160.725 139.226 1 83.15 ? C76 CDL 503 r 1 HETATM 90 C C77 CDL . . . YA 30 213.727 161.545 138.982 1 84.13 ? C77 CDL 503 r 1 HETATM 91 C C78 CDL . . . YA 30 214.024 162.939 138.412 1 84.07 ? C78 CDL 503 r 1 HETATM 92 C C79 CDL . . . YA 30 214.571 162.883 136.97 1 86.39 ? C79 CDL 503 r 1 HETATM 93 C C80 CDL . . . YA 30 215.844 163.751 136.788 1 88.14 ? C80 CDL 503 r 1 HETATM 94 C C81 CDL . . . YA 30 215.59 165.234 137.06 1 87.19 ? C81 CDL 503 r 1 HETATM 95 C C82 CDL . . . YA 30 214.439 165.812 136.187 1 88.33 ? C82 CDL 503 r 1 HETATM 96 C C83 CDL . . . YA 30 214.738 165.711 134.679 1 90.13 ? C83 CDL 503 r 1 HETATM 97 C C84 CDL . . . YA 30 215.925 166.607 134.251 1 89.57 ? C84 CDL 503 r 1 HETATM 98 C C85 CDL . . . YA 30 216.746 165.979 133.108 1 87.76 ? C85 CDL 503 r 1 HETATM 99 C C86 CDL . . . YA 30 217.078 166.995 132.012 1 89.4 ? C86 CDL 503 r 1 HETATM 100 C C87 CDL . . . YA 30 215.878 167.868 131.648 1 89.02 ? C87 CDL 503 r 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 100 #