data_7VXS # _model_server_result.job_id 9F8WZgRzL0BnZSo0dKQeSg _model_server_result.datetime_utc '2024-12-21 17:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":702}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . QA 30 242.61 199.854 148.812 1 85.72 ? C1 CDL 702 l 1 HETATM 2 O O1 CDL . . . QA 30 241.701 199.047 148.056 1 86.52 ? O1 CDL 702 l 1 HETATM 3 C CA2 CDL . . . QA 30 242.815 201.203 148.128 1 87.89 ? CA2 CDL 702 l 1 HETATM 4 O OA2 CDL . . . QA 30 242.744 201.061 146.712 1 89.34 ? OA2 CDL 702 l 1 HETATM 5 P PA1 CDL . . . QA 30 242.761 202.34 145.741 1 87.84 ? PA1 CDL 702 l 1 HETATM 6 O OA3 CDL . . . QA 30 244.062 202.353 144.983 1 95.57 ? OA3 CDL 702 l 1 HETATM 7 O OA4 CDL . . . QA 30 242.348 203.541 146.543 1 84.41 ? OA4 CDL 702 l 1 HETATM 8 O OA5 CDL . . . QA 30 241.566 202.015 144.716 1 77.84 ? OA5 CDL 702 l 1 HETATM 9 C CA3 CDL . . . QA 30 241.822 201.455 143.432 1 78.63 ? CA3 CDL 702 l 1 HETATM 10 C CA4 CDL . . . QA 30 241.962 202.577 142.415 1 81.58 ? CA4 CDL 702 l 1 HETATM 11 O OA6 CDL . . . QA 30 240.974 203.587 142.608 1 85.87 ? OA6 CDL 702 l 1 HETATM 12 C CA5 CDL . . . QA 30 241.074 204.635 141.601 1 84.09 ? CA5 CDL 702 l 1 HETATM 13 O OA7 CDL . . . QA 30 242.126 204.799 141.009 1 90.2 ? OA7 CDL 702 l 1 HETATM 14 C C11 CDL . . . QA 30 239.899 205.521 141.275 1 77.42 ? C11 CDL 702 l 1 HETATM 15 C C12 CDL . . . QA 30 238.926 204.758 140.391 1 80.41 ? C12 CDL 702 l 1 HETATM 16 C C13 CDL . . . QA 30 238.27 205.678 139.372 1 81.82 ? C13 CDL 702 l 1 HETATM 17 C C14 CDL . . . QA 30 239.158 205.866 138.15 1 78.71 ? C14 CDL 702 l 1 HETATM 18 C C15 CDL . . . QA 30 238.467 206.747 137.119 1 82.34 ? C15 CDL 702 l 1 HETATM 19 C C16 CDL . . . QA 30 238.945 206.405 135.714 1 83.02 ? C16 CDL 702 l 1 HETATM 20 C C17 CDL . . . QA 30 237.991 206.964 134.666 1 83.76 ? C17 CDL 702 l 1 HETATM 21 C C18 CDL . . . QA 30 238.217 206.308 133.31 1 81.24 ? C18 CDL 702 l 1 HETATM 22 C C19 CDL . . . QA 30 239.668 206.443 132.872 1 83.45 ? C19 CDL 702 l 1 HETATM 23 C C20 CDL . . . QA 30 239.8 206.277 131.364 1 83.31 ? C20 CDL 702 l 1 HETATM 24 C C21 CDL . . . QA 30 239.578 204.831 130.94 1 85.08 ? C21 CDL 702 l 1 HETATM 25 C C22 CDL . . . QA 30 239.933 204.648 129.471 1 85.3 ? C22 CDL 702 l 1 HETATM 26 C C23 CDL . . . QA 30 241.302 205.247 129.17 1 88.42 ? C23 CDL 702 l 1 HETATM 27 C C24 CDL . . . QA 30 241.522 205.409 127.672 1 85.4 ? C24 CDL 702 l 1 HETATM 28 C C25 CDL . . . QA 30 240.46 206.32 127.071 1 82.66 ? C25 CDL 702 l 1 HETATM 29 C C26 CDL . . . QA 30 240.781 206.66 125.622 1 84.09 ? C26 CDL 702 l 1 HETATM 30 C C27 CDL . . . QA 30 242.035 207.498 125.531 1 84.05 ? C27 CDL 702 l 1 HETATM 31 C CA6 CDL . . . QA 30 241.8 202.007 141.014 1 84.37 ? CA6 CDL 702 l 1 HETATM 32 O OA8 CDL . . . QA 30 240.804 200.987 141.017 1 92.42 ? OA8 CDL 702 l 1 HETATM 33 C CA7 CDL . . . QA 30 239.648 201.127 140.149 1 92.76 ? CA7 CDL 702 l 1 HETATM 34 O OA9 CDL . . . QA 30 238.883 202.055 140.336 1 94.28 ? OA9 CDL 702 l 1 HETATM 35 C C31 CDL . . . QA 30 239.383 200.135 139.044 1 85.95 ? C31 CDL 702 l 1 HETATM 36 C C32 CDL . . . QA 30 238.151 200.575 138.261 1 81.09 ? C32 CDL 702 l 1 HETATM 37 C C33 CDL . . . QA 30 238.505 201.611 137.204 1 83.54 ? C33 CDL 702 l 1 HETATM 38 C C34 CDL . . . QA 30 237.272 202.404 136.789 1 87.23 ? C34 CDL 702 l 1 HETATM 39 C C35 CDL . . . QA 30 236.054 201.502 136.634 1 87.49 ? C35 CDL 702 l 1 HETATM 40 C C36 CDL . . . QA 30 234.832 202.305 136.206 1 82.93 ? C36 CDL 702 l 1 HETATM 41 C C37 CDL . . . QA 30 235.036 202.891 134.815 1 82.13 ? C37 CDL 702 l 1 HETATM 42 C C38 CDL . . . QA 30 235.062 201.783 133.772 1 82.85 ? C38 CDL 702 l 1 HETATM 43 C C39 CDL . . . QA 30 235.941 202.16 132.589 1 81.94 ? C39 CDL 702 l 1 HETATM 44 C C40 CDL . . . QA 30 236.269 200.925 131.764 1 81.78 ? C40 CDL 702 l 1 HETATM 45 C C41 CDL . . . QA 30 237.57 201.113 130.997 1 85.2 ? C41 CDL 702 l 1 HETATM 46 C C42 CDL . . . QA 30 238.053 199.785 130.431 1 84.74 ? C42 CDL 702 l 1 HETATM 47 C C43 CDL . . . QA 30 239.494 199.884 129.951 1 84.26 ? C43 CDL 702 l 1 HETATM 48 C C44 CDL . . . QA 30 240.1 198.495 129.815 1 82.26 ? C44 CDL 702 l 1 HETATM 49 C C45 CDL . . . QA 30 240.043 197.754 131.144 1 84.44 ? C45 CDL 702 l 1 HETATM 50 C C46 CDL . . . QA 30 240.728 196.397 131.042 1 87.63 ? C46 CDL 702 l 1 HETATM 51 C C47 CDL . . . QA 30 240.674 195.661 132.362 1 81.3 ? C47 CDL 702 l 1 HETATM 52 C CB2 CDL . . . QA 30 243.938 199.121 148.945 1 82.17 ? CB2 CDL 702 l 1 HETATM 53 O OB2 CDL . . . QA 30 244.536 198.993 147.662 1 87 ? OB2 CDL 702 l 1 HETATM 54 P PB2 CDL . . . QA 30 245.971 198.29 147.487 1 103.01 ? PB2 CDL 702 l 1 HETATM 55 O OB3 CDL . . . QA 30 245.822 196.813 147.734 1 91.96 ? OB3 CDL 702 l 1 HETATM 56 O OB4 CDL . . . QA 30 246.984 199.082 148.273 1 91.67 ? OB4 CDL 702 l 1 HETATM 57 O OB5 CDL . . . QA 30 246.233 198.522 145.922 1 86.46 ? OB5 CDL 702 l 1 HETATM 58 C CB3 CDL . . . QA 30 246.763 197.49 145.1 1 81.17 ? CB3 CDL 702 l 1 HETATM 59 C CB4 CDL . . . QA 30 246.025 197.556 143.772 1 83.17 ? CB4 CDL 702 l 1 HETATM 60 O OB6 CDL . . . QA 30 246.064 198.894 143.291 1 87.63 ? OB6 CDL 702 l 1 HETATM 61 C CB5 CDL . . . QA 30 245.785 198.963 141.867 1 91.5 ? CB5 CDL 702 l 1 HETATM 62 O OB7 CDL . . . QA 30 246.018 197.992 141.169 1 90.83 ? OB7 CDL 702 l 1 HETATM 63 C C51 CDL . . . QA 30 245.208 200.222 141.268 1 85.32 ? C51 CDL 702 l 1 HETATM 64 C C52 CDL . . . QA 30 245.048 200.035 139.767 1 85.42 ? C52 CDL 702 l 1 HETATM 65 C C53 CDL . . . QA 30 245.337 201.343 139.046 1 88.33 ? C53 CDL 702 l 1 HETATM 66 C C54 CDL . . . QA 30 244.091 202.207 138.921 1 87.59 ? C54 CDL 702 l 1 HETATM 67 C C55 CDL . . . QA 30 243.472 202.062 137.538 1 83.58 ? C55 CDL 702 l 1 HETATM 68 C C56 CDL . . . QA 30 242.495 203.199 137.282 1 83.6 ? C56 CDL 702 l 1 HETATM 69 C C57 CDL . . . QA 30 242.15 203.31 135.803 1 87.98 ? C57 CDL 702 l 1 HETATM 70 C C58 CDL . . . QA 30 241.772 201.952 135.231 1 87.08 ? C58 CDL 702 l 1 HETATM 71 C C59 CDL . . . QA 30 241.037 202.107 133.906 1 86.75 ? C59 CDL 702 l 1 HETATM 72 C C60 CDL . . . QA 30 240.95 200.771 133.18 1 85.24 ? C60 CDL 702 l 1 HETATM 73 C C61 CDL . . . QA 30 242.313 200.34 132.652 1 88.12 ? C61 CDL 702 l 1 HETATM 74 C C62 CDL . . . QA 30 242.732 201.173 131.446 1 90.21 ? C62 CDL 702 l 1 HETATM 75 C C63 CDL . . . QA 30 243.738 200.414 130.588 1 89.32 ? C63 CDL 702 l 1 HETATM 76 C C64 CDL . . . QA 30 243.971 201.104 129.249 1 88.28 ? C64 CDL 702 l 1 HETATM 77 C C65 CDL . . . QA 30 244.978 202.243 129.372 1 87.8 ? C65 CDL 702 l 1 HETATM 78 C C66 CDL . . . QA 30 244.402 203.417 130.154 1 84.93 ? C66 CDL 702 l 1 HETATM 79 C CB6 CDL . . . QA 30 244.569 197.171 143.997 1 86.63 ? CB6 CDL 702 l 1 HETATM 80 O OB8 CDL . . . QA 30 243.888 197.131 142.747 1 88.12 ? OB8 CDL 702 l 1 HETATM 81 C CB7 CDL . . . QA 30 242.603 196.462 142.653 1 87.5 ? CB7 CDL 702 l 1 HETATM 82 O OB9 CDL . . . QA 30 242.038 196.142 143.681 1 89.06 ? OB9 CDL 702 l 1 HETATM 83 C C71 CDL . . . QA 30 241.988 196.142 141.312 1 81.93 ? C71 CDL 702 l 1 HETATM 84 C C72 CDL . . . QA 30 240.853 197.115 141.024 1 85.61 ? C72 CDL 702 l 1 HETATM 85 C C73 CDL . . . QA 30 239.92 196.582 139.941 1 85.74 ? C73 CDL 702 l 1 HETATM 86 C C74 CDL . . . QA 30 240.02 197.381 138.646 1 86.88 ? C74 CDL 702 l 1 HETATM 87 C C75 CDL . . . QA 30 241.219 196.977 137.797 1 85.91 ? C75 CDL 702 l 1 HETATM 88 C C76 CDL . . . QA 30 241.169 197.677 136.444 1 87.66 ? C76 CDL 702 l 1 HETATM 89 C C77 CDL . . . QA 30 242.032 196.957 135.414 1 87.16 ? C77 CDL 702 l 1 HETATM 90 C C78 CDL . . . QA 30 243.488 197.405 135.473 1 89.33 ? C78 CDL 702 l 1 HETATM 91 C C79 CDL . . . QA 30 243.707 198.667 134.646 1 89.1 ? C79 CDL 702 l 1 HETATM 92 C C80 CDL . . . QA 30 245.189 199.009 134.537 1 86.73 ? C80 CDL 702 l 1 HETATM 93 C C81 CDL . . . QA 30 245.392 200.29 133.737 1 87.5 ? C81 CDL 702 l 1 HETATM 94 C C82 CDL . . . QA 30 246.864 200.679 133.657 1 87.11 ? C82 CDL 702 l 1 HETATM 95 C C83 CDL . . . QA 30 247.026 201.99 132.898 1 85.3 ? C83 CDL 702 l 1 HETATM 96 C C84 CDL . . . QA 30 246.242 203.1 133.585 1 87.35 ? C84 CDL 702 l 1 HETATM 97 C C85 CDL . . . QA 30 245.739 204.124 132.577 1 87.62 ? C85 CDL 702 l 1 HETATM 98 C C86 CDL . . . QA 30 244.645 204.99 133.188 1 84.27 ? C86 CDL 702 l 1 HETATM 99 C C87 CDL . . . QA 30 243.786 205.613 132.111 1 81.09 ? C87 CDL 702 l 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 75 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 99 #