data_7VXS # _model_server_result.job_id 5K0v3EwoNbY9R9qysBeBIw _model_server_result.datetime_utc '2024-12-21 17:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":703}' # _entry.id 7VXS # _exptl.entry_id 7VXS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VXS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 KA N N ? 30 QA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 YA N N ? 30 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VXS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 CDL V 1 201 201 CDL CDL . EA 30 CDL V 1 202 203 CDL CDL . FA 31 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 30 CDL a 1 201 201 CDL CDL . IA 31 PEE b 1 201 720 PEE PEE . JA 33 PLX g 1 201 705 PLX PLX . KA 30 CDL i 1 401 401 CDL CDL . LA 31 PEE i 1 402 718 PEE PEE . MA 31 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 PEE l 1 701 207 PEE PEE . QA 30 CDL l 1 702 712 CDL CDL . RA 30 CDL l 1 703 713 CDL CDL . SA 31 PEE l 1 704 719 PEE PEE . TA 30 CDL m 1 201 101 CDL CDL . UA 33 PLX n 1 101 101 PLX PLX . VA 30 CDL n 1 102 102 CDL CDL . WA 31 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 201 PLX PLX . YA 30 CDL r 1 503 714 CDL CDL . ZA 31 PEE s 1 401 201 PEE PEE . AB 30 CDL s 1 402 201 CDL CDL . BB 31 PEE s 1 403 401 PEE PEE . CB 34 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . RA 30 232.509 245.969 158.473 1 101.31 ? C1 CDL 703 l 1 HETATM 2 O O1 CDL . . . RA 30 233.105 246.832 157.55 1 100.72 ? O1 CDL 703 l 1 HETATM 3 C CA2 CDL . . . RA 30 230.974 246.064 158.284 1 99.2 ? CA2 CDL 703 l 1 HETATM 4 O OA2 CDL . . . RA 30 230.708 247.21 157.49 1 105.34 ? OA2 CDL 703 l 1 HETATM 5 P PA1 CDL . . . RA 30 229.132 247.622 157.183 1 112.96 ? PA1 CDL 703 l 1 HETATM 6 O OA3 CDL . . . RA 30 228.269 246.385 157.219 1 99.88 ? OA3 CDL 703 l 1 HETATM 7 O OA4 CDL . . . RA 30 228.651 248.597 158.215 1 106.73 ? OA4 CDL 703 l 1 HETATM 8 O OA5 CDL . . . RA 30 229.042 248.316 155.678 1 97.65 ? OA5 CDL 703 l 1 HETATM 9 C CA3 CDL . . . RA 30 227.851 248.143 154.929 1 99.85 ? CA3 CDL 703 l 1 HETATM 10 C CA4 CDL . . . RA 30 227.466 249.491 154.342 1 103.29 ? CA4 CDL 703 l 1 HETATM 11 O OA6 CDL . . . RA 30 226.692 249.298 153.19 1 106.37 ? OA6 CDL 703 l 1 HETATM 12 C CA5 CDL . . . RA 30 225.999 250.463 152.763 1 103.38 ? CA5 CDL 703 l 1 HETATM 13 O OA7 CDL . . . RA 30 225.574 251.233 153.568 1 103.56 ? OA7 CDL 703 l 1 HETATM 14 C C11 CDL . . . RA 30 225.808 250.743 151.24 1 98.76 ? C11 CDL 703 l 1 HETATM 15 C C12 CDL . . . RA 30 226.603 249.771 150.361 1 93.99 ? C12 CDL 703 l 1 HETATM 16 C C13 CDL . . . RA 30 226.62 250.207 148.898 1 97.78 ? C13 CDL 703 l 1 HETATM 17 C C14 CDL . . . RA 30 225.881 249.211 147.983 1 98.13 ? C14 CDL 703 l 1 HETATM 18 C C15 CDL . . . RA 30 225.109 249.924 146.836 1 99.97 ? C15 CDL 703 l 1 HETATM 19 C C16 CDL . . . RA 30 224.227 248.943 146.022 1 101.9 ? C16 CDL 703 l 1 HETATM 20 C C17 CDL . . . RA 30 222.716 249.057 146.39 1 101.11 ? C17 CDL 703 l 1 HETATM 21 C C18 CDL . . . RA 30 222.333 248.164 147.598 1 97.37 ? C18 CDL 703 l 1 HETATM 22 C C19 CDL . . . RA 30 220.826 248.269 147.972 1 97.33 ? C19 CDL 703 l 1 HETATM 23 C C20 CDL . . . RA 30 219.912 248.421 146.732 1 100.56 ? C20 CDL 703 l 1 HETATM 24 C C21 CDL . . . RA 30 218.407 248.447 147.11 1 100.84 ? C21 CDL 703 l 1 HETATM 25 C C22 CDL . . . RA 30 217.508 248.935 145.938 1 98.43 ? C22 CDL 703 l 1 HETATM 26 C C23 CDL . . . RA 30 216.008 248.957 146.315 1 98.25 ? C23 CDL 703 l 1 HETATM 27 C C24 CDL . . . RA 30 215.314 247.591 146.078 1 99.95 ? C24 CDL 703 l 1 HETATM 28 C C25 CDL . . . RA 30 215.125 247.284 144.581 1 104.53 ? C25 CDL 703 l 1 HETATM 29 C C26 CDL . . . RA 30 214.344 245.97 144.344 1 103.59 ? C26 CDL 703 l 1 HETATM 30 C C27 CDL . . . RA 30 214.297 245.578 142.863 1 98.27 ? C27 CDL 703 l 1 HETATM 31 C CA6 CDL . . . RA 30 228.751 250.242 153.956 1 101.05 ? CA6 CDL 703 l 1 HETATM 32 O OA8 CDL . . . RA 30 229.29 249.59 152.825 1 102.89 ? OA8 CDL 703 l 1 HETATM 33 C CA7 CDL . . . RA 30 230.626 249.979 152.508 1 101.59 ? CA7 CDL 703 l 1 HETATM 34 O OA9 CDL . . . RA 30 231.269 250.589 153.289 1 101.1 ? OA9 CDL 703 l 1 HETATM 35 C C31 CDL . . . RA 30 231.216 249.6 151.138 1 98.68 ? C31 CDL 703 l 1 HETATM 36 C C32 CDL . . . RA 30 230.521 250.333 149.995 1 97.21 ? C32 CDL 703 l 1 HETATM 37 C C33 CDL . . . RA 30 231.282 250.186 148.67 1 97.6 ? C33 CDL 703 l 1 HETATM 38 C C34 CDL . . . RA 30 232.23 251.376 148.403 1 99.03 ? C34 CDL 703 l 1 HETATM 39 C C35 CDL . . . RA 30 232.085 251.912 146.955 1 97.53 ? C35 CDL 703 l 1 HETATM 40 C C36 CDL . . . RA 30 230.748 252.658 146.74 1 96.14 ? C36 CDL 703 l 1 HETATM 41 C C37 CDL . . . RA 30 230.726 253.458 145.426 1 98.31 ? C37 CDL 703 l 1 HETATM 42 C C38 CDL . . . RA 30 232.123 253.925 144.999 1 98.73 ? C38 CDL 703 l 1 HETATM 43 C C39 CDL . . . RA 30 232.219 254.182 143.483 1 98.58 ? C39 CDL 703 l 1 HETATM 44 C C40 CDL . . . RA 30 232.909 255.527 143.164 1 97.58 ? C40 CDL 703 l 1 HETATM 45 C C41 CDL . . . RA 30 233.384 255.613 141.673 1 97.34 ? C41 CDL 703 l 1 HETATM 46 C C42 CDL . . . RA 30 232.231 255.991 140.704 1 99.71 ? C42 CDL 703 l 1 HETATM 47 C C43 CDL . . . RA 30 232.682 255.957 139.215 1 102.35 ? C43 CDL 703 l 1 HETATM 48 C C44 CDL . . . RA 30 233.969 256.792 138.977 1 103.19 ? C44 CDL 703 l 1 HETATM 49 C C45 CDL . . . RA 30 234.42 256.764 137.518 1 101.53 ? C45 CDL 703 l 1 HETATM 50 C C46 CDL . . . RA 30 233.614 257.739 136.638 1 100.89 ? C46 CDL 703 l 1 HETATM 51 C C47 CDL . . . RA 30 234.208 259.145 136.638 1 98.39 ? C47 CDL 703 l 1 HETATM 52 C CB2 CDL . . . RA 30 233.06 244.528 158.202 1 100.88 ? CB2 CDL 703 l 1 HETATM 53 O OB2 CDL . . . RA 30 234.44 244.643 157.883 1 107.59 ? OB2 CDL 703 l 1 HETATM 54 P PB2 CDL . . . RA 30 235.073 243.616 156.717 1 106.55 ? PB2 CDL 703 l 1 HETATM 55 O OB3 CDL . . . RA 30 236.438 243.124 157.162 1 103.64 ? OB3 CDL 703 l 1 HETATM 56 O OB4 CDL . . . RA 30 234.152 242.435 156.534 1 98.9 ? OB4 CDL 703 l 1 HETATM 57 O OB5 CDL . . . RA 30 235.216 244.444 155.267 1 94.8 ? OB5 CDL 703 l 1 HETATM 58 C CB3 CDL . . . RA 30 234.026 244.905 154.64 1 95.13 ? CB3 CDL 703 l 1 HETATM 59 C CB4 CDL . . . RA 30 234.147 244.662 153.129 1 98.38 ? CB4 CDL 703 l 1 HETATM 60 O OB6 CDL . . . RA 30 234.632 245.825 152.504 1 98.84 ? OB6 CDL 703 l 1 HETATM 61 C CB5 CDL . . . RA 30 235.718 245.585 151.617 1 98.7 ? CB5 CDL 703 l 1 HETATM 62 O OB7 CDL . . . RA 30 236.453 244.675 151.811 1 102.61 ? OB7 CDL 703 l 1 HETATM 63 C C51 CDL . . . RA 30 235.933 246.508 150.402 1 92.92 ? C51 CDL 703 l 1 HETATM 64 C C52 CDL . . . RA 30 234.604 246.86 149.713 1 93.59 ? C52 CDL 703 l 1 HETATM 65 C C53 CDL . . . RA 30 234.794 247.246 148.239 1 94.51 ? C53 CDL 703 l 1 HETATM 66 C C54 CDL . . . RA 30 236.015 248.163 148.028 1 98.49 ? C54 CDL 703 l 1 HETATM 67 C C55 CDL . . . RA 30 236.245 248.476 146.543 1 96.8 ? C55 CDL 703 l 1 HETATM 68 C C56 CDL . . . RA 30 235.087 249.319 145.95 1 97.64 ? C56 CDL 703 l 1 HETATM 69 C C57 CDL . . . RA 30 235.205 249.476 144.421 1 96.04 ? C57 CDL 703 l 1 HETATM 70 C C58 CDL . . . RA 30 234.196 248.569 143.677 1 99.41 ? C58 CDL 703 l 1 HETATM 71 C C59 CDL . . . RA 30 232.775 249.181 143.637 1 100.36 ? C59 CDL 703 l 1 HETATM 72 C C60 CDL . . . RA 30 232.765 250.579 142.995 1 99.3 ? C60 CDL 703 l 1 HETATM 73 C C61 CDL . . . RA 30 233.275 250.553 141.529 1 100.13 ? C61 CDL 703 l 1 HETATM 74 C C62 CDL . . . RA 30 234.412 251.567 141.289 1 98.93 ? C62 CDL 703 l 1 HETATM 75 C C63 CDL . . . RA 30 234.733 251.741 139.798 1 99.5 ? C63 CDL 703 l 1 HETATM 76 C C64 CDL . . . RA 30 233.467 251.918 138.944 1 101.68 ? C64 CDL 703 l 1 HETATM 77 C C65 CDL . . . RA 30 233.6 251.26 137.576 1 98.59 ? C65 CDL 703 l 1 HETATM 78 C C66 CDL . . . RA 30 232.34 251.42 136.733 1 97.01 ? C66 CDL 703 l 1 HETATM 79 C C67 CDL . . . RA 30 232.653 251.878 135.31 1 96.29 ? C67 CDL 703 l 1 HETATM 80 C CB6 CDL . . . RA 30 232.779 244.314 152.555 1 99.34 ? CB6 CDL 703 l 1 HETATM 81 O OB8 CDL . . . RA 30 231.976 245.49 152.562 1 97.57 ? OB8 CDL 703 l 1 HETATM 82 C CB7 CDL . . . RA 30 230.639 245.27 152.15 1 97.11 ? CB7 CDL 703 l 1 HETATM 83 O OB9 CDL . . . RA 30 229.972 244.465 152.709 1 99.3 ? OB9 CDL 703 l 1 HETATM 84 C C71 CDL . . . RA 30 230.047 246.086 150.978 1 97.21 ? C71 CDL 703 l 1 HETATM 85 C C72 CDL . . . RA 30 230.259 245.404 149.62 1 96.92 ? C72 CDL 703 l 1 HETATM 86 C C73 CDL . . . RA 30 229.143 245.744 148.619 1 98.52 ? C73 CDL 703 l 1 HETATM 87 C C74 CDL . . . RA 30 229.408 247.067 147.883 1 97.2 ? C74 CDL 703 l 1 HETATM 88 C C75 CDL . . . RA 30 230.464 246.924 146.754 1 96.98 ? C75 CDL 703 l 1 HETATM 89 C C76 CDL . . . RA 30 230.007 247.597 145.433 1 97.38 ? C76 CDL 703 l 1 HETATM 90 C C77 CDL . . . RA 30 229.485 246.568 144.387 1 98.38 ? C77 CDL 703 l 1 HETATM 91 C C78 CDL . . . RA 30 228.233 247.068 143.654 1 99.28 ? C78 CDL 703 l 1 HETATM 92 C C79 CDL . . . RA 30 227.475 245.929 142.937 1 100.88 ? C79 CDL 703 l 1 HETATM 93 C C80 CDL . . . RA 30 226.205 246.438 142.206 1 100.02 ? C80 CDL 703 l 1 HETATM 94 C C81 CDL . . . RA 30 225.447 245.316 141.496 1 98.09 ? C81 CDL 703 l 1 HETATM 95 C C82 CDL . . . RA 30 223.916 245.374 141.775 1 99.4 ? C82 CDL 703 l 1 HETATM 96 C C83 CDL . . . RA 30 223.562 244.946 143.213 1 98.24 ? C83 CDL 703 l 1 HETATM 97 C C84 CDL . . . RA 30 222.306 245.674 143.753 1 101.44 ? C84 CDL 703 l 1 HETATM 98 C C85 CDL . . . RA 30 221.003 244.906 143.46 1 101.06 ? C85 CDL 703 l 1 HETATM 99 C C86 CDL . . . RA 30 219.763 245.663 143.943 1 98.94 ? C86 CDL 703 l 1 HETATM 100 C C87 CDL . . . RA 30 218.547 244.751 144.102 1 94.24 ? C87 CDL 703 l 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 100 #