data_7VY1
#
_model_server_result.job_id            XTtiZ8r90aSqBZ3BF9pLWg 
_model_server_result.datetime_utc      '2024-12-21 17:11:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":201}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 RA N N 
? 31 TA N N 
? 31 XA N N 
? 31 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . EA 31 174.83 190.093 151.624 1 110.89 ? C1 CDL 201 V 1 
HETATM 2 O O1 CDL . . . EA 31 175.899 190.964 151.849 1 110.55 ? O1 CDL 201 V 1 
HETATM 3 C CA2 CDL . . . EA 31 173.86 190.773 150.623 1 112.09 ? CA2 CDL 201 V 1 
HETATM 4 O OA2 CDL . . . EA 31 174.429 192.008 150.214 1 115.2 ? OA2 CDL 201 V 1 
HETATM 5 P PA1 CDL . . . EA 31 173.462 193.09 149.413 1 125.25 ? PA1 CDL 201 V 1 
HETATM 6 O OA3 CDL . . . EA 31 172.33 192.35 148.746 1 111.97 ? OA3 CDL 201 V 1 
HETATM 7 O OA4 CDL . . . EA 31 172.904 194.087 150.385 1 113.22 ? OA4 CDL 201 V 1 
HETATM 8 O OA5 CDL . . . EA 31 174.36 193.882 148.262 1 112.32 ? OA5 CDL 201 V 1 
HETATM 9 C CA3 CDL . . . EA 31 173.7 194.357 147.1 1 108.42 ? CA3 CDL 201 V 1 
HETATM 10 C CA4 CDL . . . EA 31 174.299 193.647 145.892 1 109.71 ? CA4 CDL 201 V 1 
HETATM 11 O OA6 CDL . . . EA 31 174.158 194.439 144.736 1 110.79 ? OA6 CDL 201 V 1 
HETATM 12 C CA5 CDL . . . EA 31 172.923 194.349 144.028 1 109.6 ? CA5 CDL 201 V 1 
HETATM 13 O OA7 CDL . . . EA 31 171.887 194.587 144.568 1 108.12 ? OA7 CDL 201 V 1 
HETATM 14 C C11 CDL . . . EA 31 172.926 193.943 142.521 1 107.99 ? C11 CDL 201 V 1 
HETATM 15 C C12 CDL . . . EA 31 171.712 193.084 142.151 1 105.49 ? C12 CDL 201 V 1 
HETATM 16 C C13 CDL . . . EA 31 171.606 192.784 140.657 1 105.96 ? C13 CDL 201 V 1 
HETATM 17 C C14 CDL . . . EA 31 172.359 193.789 139.763 1 106.74 ? C14 CDL 201 V 1 
HETATM 18 C C15 CDL . . . EA 31 172.634 193.207 138.346 1 106.88 ? C15 CDL 201 V 1 
HETATM 19 C C16 CDL . . . EA 31 172.963 194.292 137.29 1 106.54 ? C16 CDL 201 V 1 
HETATM 20 C C17 CDL . . . EA 31 172.285 193.998 135.916 1 105.69 ? C17 CDL 201 V 1 
HETATM 21 C C18 CDL . . . EA 31 172.898 194.823 134.755 1 106.8 ? C18 CDL 201 V 1 
HETATM 22 C C19 CDL . . . EA 31 172.259 194.484 133.378 1 106.82 ? C19 CDL 201 V 1 
HETATM 23 C C20 CDL . . . EA 31 172.52 195.59 132.326 1 107.7 ? C20 CDL 201 V 1 
HETATM 24 C C21 CDL . . . EA 31 171.872 195.285 130.949 1 104.66 ? C21 CDL 201 V 1 
HETATM 25 C C22 CDL . . . EA 31 172.135 196.418 129.918 1 105.29 ? C22 CDL 201 V 1 
HETATM 26 C C23 CDL . . . EA 31 171.313 196.249 128.621 1 106.4 ? C23 CDL 201 V 1 
HETATM 27 C C24 CDL . . . EA 31 171.863 195.129 127.699 1 107.45 ? C24 CDL 201 V 1 
HETATM 28 C C25 CDL . . . EA 31 173.194 195.512 127.029 1 104.24 ? C25 CDL 201 V 1 
HETATM 29 C CA6 CDL . . . EA 31 173.639 192.263 145.71 1 109.62 ? CA6 CDL 201 V 1 
HETATM 30 O OA8 CDL . . . EA 31 174.537 191.431 145.003 1 111.99 ? OA8 CDL 201 V 1 
HETATM 31 C CA7 CDL . . . EA 31 174.275 190.032 145.137 1 109.05 ? CA7 CDL 201 V 1 
HETATM 32 O OA9 CDL . . . EA 31 173.922 189.59 146.174 1 105.29 ? OA9 CDL 201 V 1 
HETATM 33 C C31 CDL . . . EA 31 174.451 189.104 143.92 1 107.75 ? C31 CDL 201 V 1 
HETATM 34 C C32 CDL . . . EA 31 175.921 188.866 143.589 1 107.1 ? C32 CDL 201 V 1 
HETATM 35 C C33 CDL . . . EA 31 176.521 190.02 142.772 1 108.22 ? C33 CDL 201 V 1 
HETATM 36 C C34 CDL . . . EA 31 176.49 189.764 141.247 1 108.22 ? C34 CDL 201 V 1 
HETATM 37 C C35 CDL . . . EA 31 176.536 188.255 140.891 1 106.89 ? C35 CDL 201 V 1 
HETATM 38 C C36 CDL . . . EA 31 175.47 187.87 139.839 1 109.52 ? C36 CDL 201 V 1 
HETATM 39 C C37 CDL . . . EA 31 175.454 188.825 138.633 1 108.27 ? C37 CDL 201 V 1 
HETATM 40 C C38 CDL . . . EA 31 174.027 189.199 138.217 1 108.14 ? C38 CDL 201 V 1 
HETATM 41 C C39 CDL . . . EA 31 173.988 190.11 136.975 1 108.52 ? C39 CDL 201 V 1 
HETATM 42 C C40 CDL . . . EA 31 174.946 189.641 135.857 1 108.38 ? C40 CDL 201 V 1 
HETATM 43 C C41 CDL . . . EA 31 174.949 190.622 134.632 1 110.34 ? C41 CDL 201 V 1 
HETATM 44 C C42 CDL . . . EA 31 175.287 189.904 133.296 1 111.5 ? C42 CDL 201 V 1 
HETATM 45 C C43 CDL . . . EA 31 174.121 189.963 132.266 1 109.35 ? C43 CDL 201 V 1 
HETATM 46 C C44 CDL . . . EA 31 173.824 191.411 131.793 1 107.42 ? C44 CDL 201 V 1 
HETATM 47 C C45 CDL . . . EA 31 172.643 191.478 130.828 1 105.66 ? C45 CDL 201 V 1 
HETATM 48 C C46 CDL . . . EA 31 172.941 190.804 129.475 1 105.66 ? C46 CDL 201 V 1 
HETATM 49 C C47 CDL . . . EA 31 174.169 191.395 128.789 1 104.2 ? C47 CDL 201 V 1 
HETATM 50 C CB2 CDL . . . EA 31 175.406 188.745 151.07 1 109.74 ? CB2 CDL 201 V 1 
HETATM 51 O OB2 CDL . . . EA 31 174.799 188.494 149.81 1 113.05 ? OB2 CDL 201 V 1 
HETATM 52 P PB2 CDL . . . EA 31 173.956 187.058 149.609 1 122.58 ? PB2 CDL 201 V 1 
HETATM 53 O OB3 CDL . . . EA 31 174.453 186.038 150.617 1 110.18 ? OB3 CDL 201 V 1 
HETATM 54 O OB4 CDL . . . EA 31 172.482 187.307 149.828 1 115.57 ? OB4 CDL 201 V 1 
HETATM 55 O OB5 CDL . . . EA 31 174.192 186.478 148.056 1 111.04 ? OB5 CDL 201 V 1 
HETATM 56 C CB3 CDL . . . EA 31 173.048 186.234 147.25 1 108.53 ? CB3 CDL 201 V 1 
HETATM 57 C CB4 CDL . . . EA 31 173.078 184.758 146.835 1 108.87 ? CB4 CDL 201 V 1 
HETATM 58 O OB6 CDL . . . EA 31 174.413 184.324 146.774 1 110.91 ? OB6 CDL 201 V 1 
HETATM 59 C CB5 CDL . . . EA 31 174.605 183.006 147.27 1 108.76 ? CB5 CDL 201 V 1 
HETATM 60 O OB7 CDL . . . EA 31 174.115 182.682 148.299 1 109.25 ? OB7 CDL 201 V 1 
HETATM 61 C C51 CDL . . . EA 31 175.443 182 146.458 1 105.41 ? C51 CDL 201 V 1 
HETATM 62 C C52 CDL . . . EA 31 175.073 182.038 144.966 1 106.16 ? C52 CDL 201 V 1 
HETATM 63 C C53 CDL . . . EA 31 176.185 181.475 144.07 1 106.26 ? C53 CDL 201 V 1 
HETATM 64 C C54 CDL . . . EA 31 176.361 179.954 144.255 1 104.74 ? C54 CDL 201 V 1 
HETATM 65 C C55 CDL . . . EA 31 176.06 179.177 142.966 1 103.81 ? C55 CDL 201 V 1 
HETATM 66 C C56 CDL . . . EA 31 174.701 179.596 142.351 1 103.3 ? C56 CDL 201 V 1 
HETATM 67 C C57 CDL . . . EA 31 174.764 179.713 140.816 1 104.11 ? C57 CDL 201 V 1 
HETATM 68 C C58 CDL . . . EA 31 173.407 179.371 140.157 1 104.12 ? C58 CDL 201 V 1 
HETATM 69 C C59 CDL . . . EA 31 173.484 179.409 138.613 1 106.21 ? C59 CDL 201 V 1 
HETATM 70 C C60 CDL . . . EA 31 174.061 180.741 138.101 1 106.88 ? C60 CDL 201 V 1 
HETATM 71 C C61 CDL . . . EA 31 173.342 181.272 136.83 1 107.27 ? C61 CDL 201 V 1 
HETATM 72 C C62 CDL . . . EA 31 172.499 180.202 136.105 1 105.44 ? C62 CDL 201 V 1 
HETATM 73 C C63 CDL . . . EA 31 171.98 180.703 134.75 1 104.83 ? C63 CDL 201 V 1 
HETATM 74 C C64 CDL . . . EA 31 171.394 179.578 133.885 1 104.88 ? C64 CDL 201 V 1 
HETATM 75 C C65 CDL . . . EA 31 172.024 178.223 134.178 1 103.18 ? C65 CDL 201 V 1 
HETATM 76 C C66 CDL . . . EA 31 171.556 177.153 133.2 1 103.2 ? C66 CDL 201 V 1 
HETATM 77 C C67 CDL . . . EA 31 172.622 176.089 132.961 1 102.7 ? C67 CDL 201 V 1 
HETATM 78 C CB6 CDL . . . EA 31 172.432 184.595 145.464 1 107.72 ? CB6 CDL 201 V 1 
HETATM 79 O OB8 CDL . . . EA 31 173.378 184.949 144.462 1 104.55 ? OB8 CDL 201 V 1 
HETATM 80 C CB7 CDL . . . EA 31 172.862 184.845 143.149 1 106.25 ? CB7 CDL 201 V 1 
HETATM 81 O OB9 CDL . . . EA 31 171.739 185.155 142.934 1 108.87 ? OB9 CDL 201 V 1 
HETATM 82 C C71 CDL . . . EA 31 173.75 184.34 141.99 1 107.96 ? C71 CDL 201 V 1 
HETATM 83 C C72 CDL . . . EA 31 173.4 185.022 140.661 1 108.09 ? C72 CDL 201 V 1 
HETATM 84 C C73 CDL . . . EA 31 173.443 184.049 139.472 1 106.18 ? C73 CDL 201 V 1 
HETATM 85 C C74 CDL . . . EA 31 172.437 184.415 138.37 1 105.82 ? C74 CDL 201 V 1 
HETATM 86 C C75 CDL . . . EA 31 172.918 185.607 137.5 1 107.18 ? C75 CDL 201 V 1 
HETATM 87 C C76 CDL . . . EA 31 171.818 186.114 136.531 1 108.5 ? C76 CDL 201 V 1 
HETATM 88 C C77 CDL . . . EA 31 172.116 185.741 135.048 1 108.99 ? C77 CDL 201 V 1 
HETATM 89 C C78 CDL . . . EA 31 170.839 185.584 134.208 1 107.04 ? C78 CDL 201 V 1 
HETATM 90 C C79 CDL . . . EA 31 171.104 184.849 132.877 1 107.5 ? C79 CDL 201 V 1 
HETATM 91 C C80 CDL . . . EA 31 169.924 184.975 131.879 1 107.2 ? C80 CDL 201 V 1 
HETATM 92 C C81 CDL . . . EA 31 169.685 186.416 131.425 1 108.31 ? C81 CDL 201 V 1 
HETATM 93 C C82 CDL . . . EA 31 168.494 186.529 130.429 1 106.87 ? C82 CDL 201 V 1 
HETATM 94 C C83 CDL . . . EA 31 168.332 187.953 129.863 1 102.95 ? C83 CDL 201 V 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           94 
#