data_7VY1
#
_model_server_result.job_id            26Bxg7p6ViRlBCSn8w0CyQ 
_model_server_result.datetime_utc      '2024-11-14 23:17:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":201}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 RA N N 
? 31 TA N N 
? 31 XA N N 
? 31 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . HA 31 250.334 191.881 113.943 1 76.03 ? C1 CDL 201 a 1 
HETATM 2 O O1 CDL . . . HA 31 249.931 191.077 112.876 1 76.72 ? O1 CDL 201 a 1 
HETATM 3 C CA2 CDL . . . HA 31 251.601 191.239 114.562 1 77.35 ? CA2 CDL 201 a 1 
HETATM 4 O OA2 CDL . . . HA 31 252.502 192.281 114.91 1 78.98 ? OA2 CDL 201 a 1 
HETATM 5 P PA1 CDL . . . HA 31 254.128 191.968 114.877 1 90.56 ? PA1 CDL 201 a 1 
HETATM 6 O OA3 CDL . . . HA 31 254.361 190.502 114.627 1 84.18 ? OA3 CDL 201 a 1 
HETATM 7 O OA4 CDL . . . HA 31 254.77 192.765 113.784 1 76.7 ? OA4 CDL 201 a 1 
HETATM 8 O OA5 CDL . . . HA 31 254.788 192.381 116.341 1 75.09 ? OA5 CDL 201 a 1 
HETATM 9 C CA3 CDL . . . HA 31 255.996 191.754 116.733 1 70.19 ? CA3 CDL 201 a 1 
HETATM 10 C CA4 CDL . . . HA 31 255.808 191.158 118.12 1 72.85 ? CA4 CDL 201 a 1 
HETATM 11 O OA6 CDL . . . HA 31 254.852 191.891 118.836 1 77.56 ? OA6 CDL 201 a 1 
HETATM 12 C CA5 CDL . . . HA 31 254.105 191.107 119.757 1 78.86 ? CA5 CDL 201 a 1 
HETATM 13 O OA7 CDL . . . HA 31 254.393 189.966 119.938 1 77.64 ? OA7 CDL 201 a 1 
HETATM 14 C C11 CDL . . . HA 31 252.908 191.724 120.543 1 75.49 ? C11 CDL 201 a 1 
HETATM 15 C C12 CDL . . . HA 31 252.857 191.213 121.986 1 71.68 ? C12 CDL 201 a 1 
HETATM 16 C C13 CDL . . . HA 31 251.45 190.804 122.413 1 73.75 ? C13 CDL 201 a 1 
HETATM 17 C C14 CDL . . . HA 31 251.334 190.616 123.938 1 73.94 ? C14 CDL 201 a 1 
HETATM 18 C C15 CDL . . . HA 31 249.878 190.824 124.443 1 76.48 ? C15 CDL 201 a 1 
HETATM 19 C C16 CDL . . . HA 31 249.703 190.442 125.933 1 74.39 ? C16 CDL 201 a 1 
HETATM 20 C C17 CDL . . . HA 31 248.349 189.716 126.199 1 75.12 ? C17 CDL 201 a 1 
HETATM 21 C C18 CDL . . . HA 31 248.416 188.789 127.439 1 76.78 ? C18 CDL 201 a 1 
HETATM 22 C C19 CDL . . . HA 31 247.037 188.173 127.807 1 73.83 ? C19 CDL 201 a 1 
HETATM 23 C C20 CDL . . . HA 31 246.889 187.966 129.332 1 71.92 ? C20 CDL 201 a 1 
HETATM 24 C C21 CDL . . . HA 31 247.167 189.27 130.126 1 74.52 ? C21 CDL 201 a 1 
HETATM 25 C C22 CDL . . . HA 31 247.785 188.995 131.526 1 75.63 ? C22 CDL 201 a 1 
HETATM 26 C C23 CDL . . . HA 31 248.483 190.239 132.12 1 76.96 ? C23 CDL 201 a 1 
HETATM 27 C C24 CDL . . . HA 31 250.03 190.12 132.104 1 78.94 ? C24 CDL 201 a 1 
HETATM 28 C C25 CDL . . . HA 31 250.6 189.981 130.681 1 75.5 ? C25 CDL 201 a 1 
HETATM 29 C C26 CDL . . . HA 31 252.144 190.029 130.649 1 76.14 ? C26 CDL 201 a 1 
HETATM 30 C C27 CDL . . . HA 31 252.693 191.372 131.141 1 77.06 ? C27 CDL 201 a 1 
HETATM 31 C CA6 CDL . . . HA 31 257.151 191.209 118.868 1 73.38 ? CA6 CDL 201 a 1 
HETATM 32 O OA8 CDL . . . HA 31 257.539 192.564 118.946 1 76.78 ? OA8 CDL 201 a 1 
HETATM 33 C CA7 CDL . . . HA 31 258.79 192.778 119.602 1 79.7 ? CA7 CDL 201 a 1 
HETATM 34 O OA9 CDL . . . HA 31 259.18 192.005 120.408 1 80.76 ? OA9 CDL 201 a 1 
HETATM 35 C C31 CDL . . . HA 31 259.625 194.022 119.255 1 76.05 ? C31 CDL 201 a 1 
HETATM 36 C C32 CDL . . . HA 31 258.769 195.285 119.236 1 73.43 ? C32 CDL 201 a 1 
HETATM 37 C C33 CDL . . . HA 31 259.518 196.506 119.787 1 74.23 ? C33 CDL 201 a 1 
HETATM 38 C C34 CDL . . . HA 31 261 196.531 119.352 1 72.97 ? C34 CDL 201 a 1 
HETATM 39 C C35 CDL . . . HA 31 261.667 197.898 119.644 1 73.68 ? C35 CDL 201 a 1 
HETATM 40 C C36 CDL . . . HA 31 263.207 197.787 119.686 1 73.41 ? C36 CDL 201 a 1 
HETATM 41 C C37 CDL . . . HA 31 263.684 196.925 120.865 1 74.61 ? C37 CDL 201 a 1 
HETATM 42 C C38 CDL . . . HA 31 265.052 196.288 120.598 1 76 ? C38 CDL 201 a 1 
HETATM 43 C C39 CDL . . . HA 31 266.072 197.311 120.067 1 73.59 ? C39 CDL 201 a 1 
HETATM 44 C C40 CDL . . . HA 31 267.276 197.469 121.019 1 75.74 ? C40 CDL 201 a 1 
HETATM 45 C C41 CDL . . . HA 31 268.181 196.19 121.044 1 78.09 ? C41 CDL 201 a 1 
HETATM 46 C C42 CDL . . . HA 31 269.064 196.071 119.772 1 79.65 ? C42 CDL 201 a 1 
HETATM 47 C C43 CDL . . . HA 31 270.086 197.238 119.653 1 79.46 ? C43 CDL 201 a 1 
HETATM 48 C C44 CDL . . . HA 31 271.051 197.305 120.866 1 79.15 ? C44 CDL 201 a 1 
HETATM 49 C C45 CDL . . . HA 31 271.922 198.559 120.847 1 79.37 ? C45 CDL 201 a 1 
HETATM 50 C C46 CDL . . . HA 31 271.294 199.726 121.634 1 79.15 ? C46 CDL 201 a 1 
HETATM 51 C C47 CDL . . . HA 31 271.866 201.081 121.227 1 74.07 ? C47 CDL 201 a 1 
HETATM 52 C CB2 CDL . . . HA 31 249.14 191.945 114.954 1 75.99 ? CB2 CDL 201 a 1 
HETATM 53 O OB2 CDL . . . HA 31 249.447 191.106 116.057 1 77.4 ? OB2 CDL 201 a 1 
HETATM 54 P PB2 CDL . . . HA 31 248.236 190.814 117.177 1 79.69 ? PB2 CDL 201 a 1 
HETATM 55 O OB3 CDL . . . HA 31 246.899 191.206 116.582 1 78.12 ? OB3 CDL 201 a 1 
HETATM 56 O OB4 CDL . . . HA 31 248.222 189.35 117.538 1 73.13 ? OB4 CDL 201 a 1 
HETATM 57 O OB5 CDL . . . HA 31 248.522 191.719 118.554 1 71.55 ? OB5 CDL 201 a 1 
HETATM 58 C CB3 CDL . . . HA 31 248.028 191.227 119.79 1 71.35 ? CB3 CDL 201 a 1 
HETATM 59 C CB4 CDL . . . HA 31 247.705 192.437 120.675 1 74.85 ? CB4 CDL 201 a 1 
HETATM 60 O OB6 CDL . . . HA 31 248.836 192.753 121.448 1 76.04 ? OB6 CDL 201 a 1 
HETATM 61 C CB5 CDL . . . HA 31 248.952 194.14 121.738 1 75.46 ? CB5 CDL 201 a 1 
HETATM 62 O OB7 CDL . . . HA 31 248.157 194.898 121.3 1 76.04 ? OB7 CDL 201 a 1 
HETATM 63 C C51 CDL . . . HA 31 250.109 194.658 122.614 1 75.12 ? C51 CDL 201 a 1 
HETATM 64 C C52 CDL . . . HA 31 249.96 196.154 122.939 1 77.16 ? C52 CDL 201 a 1 
HETATM 65 C C53 CDL . . . HA 31 250.656 197.056 121.906 1 79.13 ? C53 CDL 201 a 1 
HETATM 66 C C54 CDL . . . HA 31 250.457 198.555 122.22 1 77.62 ? C54 CDL 201 a 1 
HETATM 67 C C55 CDL . . . HA 31 251.734 199.383 122.017 1 71.8 ? C55 CDL 201 a 1 
HETATM 68 C C56 CDL . . . HA 31 251.721 200.684 122.862 1 73.9 ? C56 CDL 201 a 1 
HETATM 69 C C57 CDL . . . HA 31 251.008 201.849 122.147 1 75.7 ? C57 CDL 201 a 1 
HETATM 70 C C58 CDL . . . HA 31 250.149 202.698 123.116 1 76.72 ? C58 CDL 201 a 1 
HETATM 71 C C59 CDL . . . HA 31 249.163 203.63 122.371 1 76.08 ? C59 CDL 201 a 1 
HETATM 72 C C60 CDL . . . HA 31 248.206 204.357 123.333 1 74.8 ? C60 CDL 201 a 1 
HETATM 73 C C61 CDL . . . HA 31 248.89 205.554 124.045 1 76.07 ? C61 CDL 201 a 1 
HETATM 74 C C62 CDL . . . HA 31 247.869 206.553 124.627 1 75.23 ? C62 CDL 201 a 1 
HETATM 75 C C63 CDL . . . HA 31 247.52 206.247 126.09 1 74.64 ? C63 CDL 201 a 1 
HETATM 76 C CB6 CDL . . . HA 31 246.527 192.118 121.589 1 77.42 ? CB6 CDL 201 a 1 
HETATM 77 O OB8 CDL . . . HA 31 246.736 190.84 122.182 1 82.5 ? OB8 CDL 201 a 1 
HETATM 78 C CB7 CDL . . . HA 31 245.537 190.177 122.534 1 76.11 ? CB7 CDL 201 a 1 
HETATM 79 O OB9 CDL . . . HA 31 244.64 190.133 121.761 1 73.87 ? OB9 CDL 201 a 1 
HETATM 80 C C71 CDL . . . HA 31 245.387 189.513 123.921 1 72.31 ? C71 CDL 201 a 1 
HETATM 81 C C72 CDL . . . HA 31 244.028 189.832 124.558 1 74.73 ? C72 CDL 201 a 1 
HETATM 82 C C73 CDL . . . HA 31 243.87 189.208 125.954 1 75.3 ? C73 CDL 201 a 1 
HETATM 83 C C74 CDL . . . HA 31 243.378 190.226 126.993 1 73.47 ? C74 CDL 201 a 1 
HETATM 84 C C75 CDL . . . HA 31 242.743 189.535 128.23 1 74.48 ? C75 CDL 201 a 1 
HETATM 85 C C76 CDL . . . HA 31 243.615 189.673 129.504 1 75.69 ? C76 CDL 201 a 1 
HETATM 86 C C77 CDL . . . HA 31 243.344 188.539 130.538 1 72.17 ? C77 CDL 201 a 1 
HETATM 87 C C78 CDL . . . HA 31 242.737 189.072 131.843 1 72.04 ? C78 CDL 201 a 1 
HETATM 88 C C79 CDL . . . HA 31 243.448 190.351 132.328 1 72.39 ? C79 CDL 201 a 1 
HETATM 89 C C80 CDL . . . HA 31 242.769 190.982 133.57 1 72.89 ? C80 CDL 201 a 1 
HETATM 90 C C81 CDL . . . HA 31 243.574 192.161 134.119 1 77.87 ? C81 CDL 201 a 1 
HETATM 91 C C82 CDL . . . HA 31 243.086 192.614 135.526 1 73.92 ? C82 CDL 201 a 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           91 
#