data_7VY1
#
_model_server_result.job_id            8eH4SqeUQHwo41hkvgctpg 
_model_server_result.datetime_utc      '2024-12-21 17:09:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":201}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 FA N N 
? 30 JA N N 
? 30 NA N N 
? 30 OA N N 
? 30 QA N N 
? 30 SA N N 
? 30 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . OA 30 171.902 123.325 143.434 1 72.09 ? C27 PEE 201 j 1 
HETATM 2 C C26 PEE . . . OA 30 170.393 123.337 143.673 1 71.78 ? C26 PEE 201 j 1 
HETATM 3 C C25 PEE . . . OA 30 169.936 124.603 144.384 1 72.5 ? C25 PEE 201 j 1 
HETATM 4 C C24 PEE . . . OA 30 168.47 124.917 144.1 1 67.12 ? C24 PEE 201 j 1 
HETATM 5 C C23 PEE . . . OA 30 167.527 123.99 144.861 1 66.71 ? C23 PEE 201 j 1 
HETATM 6 C C22 PEE . . . OA 30 167.075 124.587 146.19 1 67.78 ? C22 PEE 201 j 1 
HETATM 7 C C21 PEE . . . OA 30 166.27 125.872 145.991 1 67 ? C21 PEE 201 j 1 
HETATM 8 C C20 PEE . . . OA 30 165.554 126.345 147.258 1 64.39 ? C20 PEE 201 j 1 
HETATM 9 C C19 PEE . . . OA 30 166.068 125.669 148.528 1 62.16 ? C19 PEE 201 j 1 
HETATM 10 C C18 PEE . . . OA 30 167.132 126.506 149.235 1 62.75 ? C18 PEE 201 j 1 
HETATM 11 C C17 PEE . . . OA 30 166.552 127.777 149.852 1 62.36 ? C17 PEE 201 j 1 
HETATM 12 C C16 PEE . . . OA 30 167.576 128.494 150.728 1 66.36 ? C16 PEE 201 j 1 
HETATM 13 C C15 PEE . . . OA 30 168.38 127.52 151.589 1 64.95 ? C15 PEE 201 j 1 
HETATM 14 C C14 PEE . . . OA 30 169.18 128.238 152.677 1 62.74 ? C14 PEE 201 j 1 
HETATM 15 C C13 PEE . . . OA 30 170.183 127.314 153.37 1 63.66 ? C13 PEE 201 j 1 
HETATM 16 C C12 PEE . . . OA 30 170.555 127.814 154.77 1 64.02 ? C12 PEE 201 j 1 
HETATM 17 C C11 PEE . . . OA 30 171.325 126.756 155.566 1 68.56 ? C11 PEE 201 j 1 
HETATM 18 C C10 PEE . . . OA 30 171.287 127.017 157.076 1 71.09 ? C10 PEE 201 j 1 
HETATM 19 O O4 PEE . . . OA 30 171.922 127.901 157.538 1 71.51 ? O4 PEE 201 j 1 
HETATM 20 O O2 PEE . . . OA 30 170.5 126.209 157.908 1 71.57 ? O2 PEE 201 j 1 
HETATM 21 C C2 PEE . . . OA 30 171.211 125.633 158.968 1 72.21 ? C2 PEE 201 j 1 
HETATM 22 C C1 PEE . . . OA 30 170.909 126.389 160.261 1 75.21 ? C1 PEE 201 j 1 
HETATM 23 O O3P PEE . . . OA 30 169.73 125.872 160.82 1 80.7 ? O3P PEE 201 j 1 
HETATM 24 P P PEE . . . OA 30 168.633 126.934 161.449 1 95.2 ? P PEE 201 j 1 
HETATM 25 O O2P PEE . . . OA 30 167.285 126.705 160.81 1 78.12 ? O2P PEE 201 j 1 
HETATM 26 O O1P PEE . . . OA 30 169.089 128.346 161.181 1 70.82 ? O1P PEE 201 j 1 
HETATM 27 O O4P PEE . . . OA 30 168.507 126.698 163.078 1 79.69 ? O4P PEE 201 j 1 
HETATM 28 C C4 PEE . . . OA 30 167.222 126.587 163.636 1 75.37 ? C4 PEE 201 j 1 
HETATM 29 C C5 PEE . . . OA 30 167.295 125.645 164.839 1 70.21 ? C5 PEE 201 j 1 
HETATM 30 N N PEE . . . OA 30 167.891 126.323 165.976 1 73.36 ? N PEE 201 j 1 
HETATM 31 C C3 PEE . . . OA 30 170.798 124.174 159.127 1 68.42 ? C3 PEE 201 j 1 
HETATM 32 O O3 PEE . . . OA 30 170.809 123.576 157.863 1 78.49 ? O3 PEE 201 j 1 
HETATM 33 C C30 PEE . . . OA 30 171.776 122.573 157.713 1 80.55 ? C30 PEE 201 j 1 
HETATM 34 O O5 PEE . . . OA 30 171.83 121.68 158.488 1 81.62 ? O5 PEE 201 j 1 
HETATM 35 C C31 PEE . . . OA 30 172.761 122.628 156.544 1 73.14 ? C31 PEE 201 j 1 
HETATM 36 C C32 PEE . . . OA 30 172.086 122.311 155.208 1 66.41 ? C32 PEE 201 j 1 
HETATM 37 C C33 PEE . . . OA 30 171.077 121.165 155.322 1 65.45 ? C33 PEE 201 j 1 
HETATM 38 C C34 PEE . . . OA 30 171.201 120.161 154.174 1 68.49 ? C34 PEE 201 j 1 
HETATM 39 C C35 PEE . . . OA 30 171.538 120.844 152.845 1 69.13 ? C35 PEE 201 j 1 
HETATM 40 C C36 PEE . . . OA 30 171.411 119.906 151.641 1 68.32 ? C36 PEE 201 j 1 
HETATM 41 C C37 PEE . . . OA 30 171.872 118.481 151.946 1 70.44 ? C37 PEE 201 j 1 
HETATM 42 C C38 PEE . . . OA 30 172.077 117.659 150.674 1 72.68 ? C38 PEE 201 j 1 
HETATM 43 C C39 PEE . . . OA 30 170.954 117.849 149.662 1 69.56 ? C39 PEE 201 j 1 
HETATM 44 C C40 PEE . . . OA 30 170.893 116.716 148.645 1 66.91 ? C40 PEE 201 j 1 
HETATM 45 C C41 PEE . . . OA 30 170.534 115.385 149.292 1 67.66 ? C41 PEE 201 j 1 
HETATM 46 C C42 PEE . . . OA 30 171.105 114.199 148.525 1 73.39 ? C42 PEE 201 j 1 
HETATM 47 C C43 PEE . . . OA 30 170.281 113.839 147.292 1 74.59 ? C43 PEE 201 j 1 
HETATM 48 C C44 PEE . . . OA 30 169.466 112.568 147.498 1 76.04 ? C44 PEE 201 j 1 
HETATM 49 C C45 PEE . . . OA 30 168.649 112.192 146.262 1 72.2 ? C45 PEE 201 j 1 
HETATM 50 C C46 PEE . . . OA 30 167.623 111.098 146.556 1 72.07 ? C46 PEE 201 j 1 
HETATM 51 C C47 PEE . . . OA 30 168.273 109.729 146.755 1 68.29 ? C47 PEE 201 j 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           51 
#